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Twenty-four additional microsatellite markers derived from expressed sequence tags of the endangered tropical tree Shorea leprosula (Dipterocarpaceae)

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Abstract

We developed microsatellite markers from newly isolated expressed sequence tags of an endangered tropical tree species, Shorea leprosula (Dipterocarpaceae). Twenty-four loci exhibited clear, polymorphic amplification patterns among 52 individuals from a population in Indonesia, with two to 16 alleles per locus. No locus showed significant departure from Hardy–Weinberg equilibrium, and no significant genotypic disequilibrium was detected for any pair of loci after sequential Bonferroni correction.

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References

  • Ashton P (1998) Shorea leprosula. In: IUCN (2011) IUCN Red list of threatened species. Version 2011.1. Downloaded from the web at http://www.iucnredlist.org/apps/redlist/details/33123/0

  • Chang S, Puryear J, Cairney J (1993) A simple and efficient method for isolating RNA from pine trees. Plant Mol Biol Rep 11:113–116

    Article  CAS  Google Scholar 

  • Fukuoka H, Nunome T, Minamiyama Y, Kono I, Namiki N, Kojima A (2005) Read2Marker: a data processing tool for microsatellite marker development from a large data set. Biotechniques 39:472–474

    Article  PubMed  CAS  Google Scholar 

  • Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from the web at http://www.unil.ch/izea/softwares/fstat.html

  • Kondo H, Tahira T, Hayashi H, Oshima K, Hayashi K (2000) Microsatellite genotyping of post-PCR fluorescently labeled markers. Biotechniques 29:868–872

    PubMed  CAS  Google Scholar 

  • Lee SL, Tani N, Ng KKS, Tsumura Y (2004) Isolation and characterization of 20 microsatellite loci for an important tropical tree Shorea leprosula (Dipterocarpaceae) and their applicability to S. Parvifolia. Mol Ecol Notes 4:222–225

    Article  CAS  Google Scholar 

  • Ng KKS, Lee SL, Tsumura Y, Ueno S, Ng CH, Lee CT (2009) Expressed sequence tag-simple sequence repeats isolated from Shorea leprosula and their transferability to 36 species within the Dipterocarpaceae. Mol Ecol Res 9:393–398

    Article  CAS  Google Scholar 

  • Symington CF (2004) Forester’s manual of dipterocarps. In: Ashton PS, Appanah S (eds) Malayan forest records, vol 16, 2nd edn. Forest research institute Malaysia and Malaysian Nature Society, Kuala Lumpur

    Google Scholar 

Download references

Acknowledgments

The authors thank Y. Taguchi and M. Koshiba for laboratory work and members of the Forest Research Institute Malaysia for their assistance during sample collection. This study was supported by a Grant-in-Aid for Scientific Research (No. 18255010) provided by the Ministry of Education, Culture, Sports, Science and Technology of Japan and the Global Environment Research Program supported by the Japanese Ministry of Environment, Grant No. E-091.

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Correspondence to Yoshihiko Tsumura.

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Ohtani, M., Ueno, S., Tani, N. et al. Twenty-four additional microsatellite markers derived from expressed sequence tags of the endangered tropical tree Shorea leprosula (Dipterocarpaceae). Conservation Genet Resour 4, 351–354 (2012). https://doi.org/10.1007/s12686-011-9546-9

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  • DOI: https://doi.org/10.1007/s12686-011-9546-9

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