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Development of 18 microsatellite markers for the southern purple-spotted gudgeon (Mogurnda adspersa) from the lower Murray-Darling Basin through 454 pyrosequencing

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Abstract

A new set of 18 microsatellite loci was developed for the threatened Australian freshwater fish southern purple-spotted gudgeon Mogurnda adspersa (Eleotridae) using a next generation sequencing approach. A total of 84 fish from two populations (including one rescued into captivity) were successfully genotyped at all markers using a multiplex approach. As expected for threatened species, we observed relatively low genetic variation across most loci (average allelic diversity = 5.4; average heterozygosity = 0.380). No evidence for linkage disequilibrium was detected and all loci were in Hardy–Weinberg equilibrium. This new set of microsatellite markers will benefit substantially the ongoing conservation program of a critically endangered population of M. adspersa that involves captive breeding, relatedness and paternity analyses, reintroduction, and landscape genetics.

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References

  • Beheregaray LB, Sunnucks P (2000) Microsatellite loci isolated from Odontesthes argentinensis and the O. perugiae species group and their use in other south American silverside fish. Mol Ecol 9(5):629–631. doi:10.1046/j.1365-294x.2000.00882.x

    Article  PubMed  CAS  Google Scholar 

  • Carvalho D, Beheregaray L (2010) Rapid development of microsatellites for the endangered neotropical catfish Conorhynchus conirostris using a modest amount of 454 shot-gun pyrosequencing. Conserv Genet Resour 1–3. doi:10.1007/s12686-010-9365-4

  • Faircloth BC (2008) Msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design. Mol Ecol Resour 8(1):92–94

    Article  PubMed  CAS  Google Scholar 

  • Faulks LK, Gilligan DM, Beheregaray LB (2008) Phylogeography of a threatened freshwater fish (Mogurnda adspersa) in Eastern Australia: conservation implications. Mar Freshw Res 59(1):89–96. doi:10.1071/Mf07167

    Article  CAS  Google Scholar 

  • Hall A, Higham J, Hammer M, Brice C, Zampatti B (2009) Drought action plan for South Australian Murray-Darling Basin threatened freshwater fish populations 2009–2010; rescue to recovery. South Australia Department of Heritage, Adelaide

  • Hammer M, Wedderburn S, van Weenan J (2009) Action plan for South Australian freshwater fishes. Native Fish Australia (SA) Inc, Adelaide, p 206

    Google Scholar 

  • Holleley CE, Geerts PG (2009) Multiplex manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR. Biotechniques 46(7):511–517. doi:10.2144/000113156

    Article  PubMed  CAS  Google Scholar 

  • Lintermans M (2007) Fishes of the Murray-Darling Basin: an introductory guide. Murray-Darling Basin Commission, Canberra

    Google Scholar 

  • Margulies M, Egholm M, Altman WE, Attiya S et al (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437(7057):376–380. doi:10.1038/nature03959

    PubMed  CAS  Google Scholar 

  • Meglécz E (2007) Microfamily (v.1): a computer program for detecting flanking-region similarities among different microsatellite loci. Mol Ecol Notes 7(1):18–20. doi:10.1111/j.1471-8286.2006.01537.x

    Article  Google Scholar 

  • Real K, Schmidt D, Hughes J (2009) Mogurnda adspersa microsatellite markers: multiplexing and multi-tailed primer tagging. Conserv Genet Resour 1(1):411–414. doi:10.1007/s12686-009-9095-7

    Article  Google Scholar 

  • Rice WR (1989) Analyzing tables of statistical tests. Evolution 43(1):223–225

    Article  Google Scholar 

  • Rousset F (2008) Genepop ‘ 007: a complete re-implementation of the genepop software for Windows and Linux. Mol Ecol Resour 8(1):103–106. doi:10.1111/j.1471-8286.2007.01931.x

    Article  PubMed  Google Scholar 

  • Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132:365–386. doi:10.1385/1-59259-192-2:365

    PubMed  CAS  Google Scholar 

  • Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18(2):233–234. doi:10.1038/72708

    Article  PubMed  CAS  Google Scholar 

  • Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4(3):535–538. doi:10.1111/J.1471-8286.2004.00684.X

    Article  Google Scholar 

Download references

Acknowledgments

Funding for this study was provided by the Australian Research Council (LP100200409 to Beheregaray, Harris & Adams). Additional support was received by DENR, SA Museum, SA Murray Darling NRMB, PIRSA Fisheries and Native Fish Australia (SA). We thank Mark Adams for providing tissue samples and Mike Gardner for assistance with data analysis. DC is grateful to CAPES/REUNI (Brazilian Ministry of Education) for his postdoctoral fellowship.

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Correspondence to Luciano B. Beheregaray.

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Carvalho, D.C., Sasaki, M., Hammer, M.P. et al. Development of 18 microsatellite markers for the southern purple-spotted gudgeon (Mogurnda adspersa) from the lower Murray-Darling Basin through 454 pyrosequencing. Conservation Genet Resour 4, 339–341 (2012). https://doi.org/10.1007/s12686-011-9542-0

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