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Characterization of polymorphic microsatellite markers for the red rock lobster, Jasus edwardsii (Hutton 1875)

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Abstract

Jasus edwardsii is New Zealand’s largest seafood export species and supports valuable customary and recreational fisheries. Nine novel microsatellite markers were developed from 454 sequence data and scored across 45 individuals collected from Wellington, New Zealand (41°20′S, 174°48′E) to obtain diversity indices. All loci were polymorphic with the number of alleles per locus ranging from 6 to 39. Observed and expected heterozygosity ranged from 0.563–0.937 and from 0.583–0.961, respectively. There were no significant deviations from Hardy–Weinberg equilibrium for any of the loci examined. Null allele frequencies were low (<10%) across all loci. These markers are currently being employed to study the genetic structure of J. edwardsii across New Zealand and Australia.

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References

  • Bentzen P, Taggart CT, Ruzzante DE, Cook D (1996) Microsatellite polymorphism and the population structure of Atlantic cod Gadus morhua in the northwest Atlantic. Can J Fish Aquat Sci 53:2706–2721

    Article  Google Scholar 

  • Booth JD, Phillips BF (1994) Early Life history of spiny lobster. Proceedings from the fourth international workshop on lobster biology and management. Crustaceana 66:271–294

  • Booth JD, Street RJ, Smith PJ (1990) Systematic status of the rock lobsters Jasus edwardsii from New Zealand and J. novaehollandiae from Australia. NZ J Mar Freshwater Res 24:239–249

    Article  Google Scholar 

  • Chapuis M-P, Estoup A (2007) Microsatellite null alleles and estimation of population differentiation. Mol Biol Evol 24:621–631

    Article  PubMed  CAS  Google Scholar 

  • Crivello JF, Landers Jr DF, Keser M (2005) The genetic stock structure of the American lobster Homarus americanus in Long Island Sound and the Hudson Canyon. J Shellfish Res 24:841–848

    Google Scholar 

  • Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Duran C, Field M, Heled J, Kearse M, Markowitz S, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A (2010) Geneious v5.3. http://www.geneious.com

  • Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinformatics Online 1:47–50

    CAS  Google Scholar 

  • Goudet J (1995) FSTAT (Version 1.2): a computer program to calculate f-statistics. Heredity 86:485–486

    Google Scholar 

  • Kittaka J (1994) Culture of Phyllosomas of spiny lobster and its application to studies of larval recruitment and aquaculture. Crustaceana 66:258–270

    Article  Google Scholar 

  • Korbie DJ, Mattick JS (2008) Touchdown PCR for increased specificity and sensitivity in PCR amplification. Nat Protoc 3:1452–1456

    Article  PubMed  CAS  Google Scholar 

  • Mayer C (2006–2010) Phobos 3.3.11. www.rub.de/spezzoo/cm/cm_phobos.htm

  • Ministry of Fisheries, Science (2010) Report from the Mid-Year fishery assessment plenary: stock assessments and yield estimates (Unpublished report held in NIWA Greta Point library, Wellington)

  • Ovenden JR, Brasher DJ, White RWG (1992) mDNA analysis of the red rock lobster Jasus edwardsii shows an apparent absence of population subdivisions throughout Australasia. Mar Biol 326:319–326

    Article  Google Scholar 

  • Phillips BF, McWilliam PS (1986) The pelagic phase of spiny lobster development. Can J Fish Aquat Sci 43:2153–2163

    Article  Google Scholar 

  • Raymond M, Rousset F (1993) GENEPOP (Version 1.2): population genetics software for exact tests and ecumenicism. Heredity 86:248–249

    Google Scholar 

  • Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers, Bioinformatics methods and protocols: Methods in molecular biology. Humana Press, Totowa, NJ, pp 365–386

  • Sambrook J, Fritsch EF, Maniatus T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbour Laboratory Press, New York

    Google Scholar 

  • Shears N, Babcock R (2003) Continuing trophic cascade effects after 25 years of no-take marine reserve protection. Mar Ecol Prog Ser 246:1–16

    Article  Google Scholar 

  • Smith PJ, Mckoy JL, Machin PJ (1980) Genetic variation in the rock lobsters Jasus edwardsii and Jasus novaehollandiae. NZ J Mar Freshwater Res 14:55–63

    Article  Google Scholar 

  • Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538

    Article  Google Scholar 

Download references

Acknowledgments

Rock lobster tissue was provided by the New Zealand Rock Lobster Industry Council (NZ RLIC) and funding was provided by the Victoria University of Wellington Research Fund. We are grateful to Daryl Sykes for assisting in providing samples and insightful comments on the project.

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Correspondence to Luke Thomas.

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Thomas, L., Bell, J.J. Characterization of polymorphic microsatellite markers for the red rock lobster, Jasus edwardsii (Hutton 1875) . Conservation Genet Resour 4, 319–321 (2012). https://doi.org/10.1007/s12686-011-9537-x

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