Abstract
The Portuguese dogfish Centroscymnus coelolepis is a deepwater squaloid shark with a wide distribution and is also an important fishing resource in parts of its range. Despite concerns about the species’ sustainability, current fisheries management measures have been implemented without a good understanding of the stock structure. The assessment of the population structure of C. coelolepis using molecular markers will provide important information for future management efforts. Here we describe the first attempt at isolating nuclear microsatellite markers for C. coelolepis. Ten polymorphic microsatellite loci were developed and screened in 43–45 individuals collected off western Portugal, showing 3–29 alleles per loci (average: 12.5 alleles/locus) and observed heterozygosities ranging from 0.60 to 0.98. None of the markers exhibited genotypic distributions that deviated from HWE expectations, or showed evidence of linkage disequilibrium or the presence of null alleles.
References
Compagno L, Dando M, Fowler S (2005) Sharks of the world. Harper Collins Publishers, London
Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50
Fischer D, Bachmann K (1998) Microsatellite enrichment in organisms with large genomes (Allium cepa L.). BioTechniques 24:796–802
Glenn TC, Schable NA (2005) Isolating microsatellite DNA loci. Methods Enzymol 395:202–222
ICES (2009) Report of the joint meeting between ICES working group on elasmobranch fishes (WGEF) and ICCAT shark subgroup, 22–29 June 2009, Copenhagen, Denmark. ICES CM 2009/ACOM:16
Raymound M, Rousset F (1995) Genepop (version 1.2): population genetics software for exact tests and ecumenicism. J Heredity 86:248–249
Rousset F (2008) Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux. Mol Ecol Resour 8:103–106. doi:10.1111/j.1471-8286.2007.01931.x
Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365–386
Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538. doi:10.1111/j.1471-8286.2004.00684.x
Acknowledgments
A. Veríssimo was funded by the Fulbright Commission PhD scholarship 2005/2006, by “Fundo Social Europeu” (POPH/QREN) and Fundação para a Ciência e Tecnologia (SFRH/BD40326/2007). T. Moura was funded by Fundação para a Ciência e Tecnologia (SFRH/BD/29052/2006) and Promar-Certifica (31-03-01-FEP-0032). Special thanks to I. Figueiredo and Molecular Biology Lab at IPIMAR; to T. White, H. Fotherby, J. Stamford (University of Durham); to ArtesanalPesca and Quivari-Cação (Sesimbra). This is contribution number 3121 of the Virginia Institute of Marine Science.
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Ana Veríssimo and Teresa Moura with equal contributions.
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Veríssimo, A., Moura, T., McDowell, J. et al. Isolation and characterization of ten nuclear microsatellite loci for the Portuguese dogfish Centroscymnus coelolepis . Conservation Genet Resour 3, 299–301 (2011). https://doi.org/10.1007/s12686-010-9347-6
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DOI: https://doi.org/10.1007/s12686-010-9347-6