Abstract
The continuing over-exploitation of traditional coastal stocks has resulted in the shift of commercial fishing towards deep-sea ecosystems in many parts of the world. The effects on target and non-target species have been dramatic; particularly for the deep-sea sharks. With the aim of providing tools that will allow the assessment of population genetic structure of Centroselachus crepidater, novel microsatellite loci have been developed for this deep-sea elasmobranch. Seven of these markers showed between 3 and 7 alleles per locus in two North Atlantic populations, with observed and expected heterozygosities between 0.18–0.95 and 0.25–0.82, respectively. Additionally, ten loci cross-amplify in other Elasmobranch species.
References
Davies AJ, Roberts JM, Hall-Spencer J (2007) Preserving deep-sea natural heritage: emerging issues in offshore conservation and management. Biol Conserv 138(3–4):299–312
Glover AG, Smith CR (2003) The deep-sea floor ecosystem: current status and prospects of anthropogenic change by the year 2025. Environ Conserv 30:219–241
Hamilton MB, Pincus EL, Di Fiore A, Fleischer RC (1999) Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. Biotechniques 27:500–507
Klug S, Kriwet J (2010) Timing of deep-sea adaptation in dogfish sharks: insights from a supertree of extinct and extant taxa. Zoologica Scripta 39(4):331–342
Koslow JA, Boehlert GW, Gordon JDM, Haedrich RL, Lorance P, Parin N (2000) Continental slope and deep-sea fisheries: implications for a fragile ecosystem. ICES J Mar Sci 57(3):548–557
Raymond M, Rousset F (1995) GenePop, Version 1.2. Population genetics software for exact tests and ecumenicisms. J Hered 86:249
Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223–225
Roberts CM (2002) Deep impact: the rising toll of fishing in the deep sea. Trends Ecol Evol 17(5):242–245
Rozen S, Skaletsky H (2000) Primer 3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132:365–386
van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538
Acknowledgments
The authors would like to thank all members of the DEECON and MARECO projects, in particular F. Neat and Marine Scotland for the provision of samples, and Steve Bogdanowicz, Cornell University, for his help in facilitating the library development. This project is jointly funded by the Irish Research Council for Science Engineering and Technology and the EURODEEP Eurocore programme of the European Science Foundation.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Helyar, S., Coscia, I., Sala-Bozano, M. et al. New microsatellite loci for the longnose velvet dogfish Centroselachus crepidater (Squaliformes: Somniosidae) and other deep sea sharks. Conservation Genet Resour 3, 173–176 (2011). https://doi.org/10.1007/s12686-010-9316-0
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12686-010-9316-0