Fowler A, Ham J, Jennings P (2003) Discriminating between cultured and wild yellowtail kingfish (Seriola lalandi) in South Australia. Publication No. RD03/0159. SARDI Aquatic Sciences Publication, Adelaide
Google Scholar
Nakada M (2002) Yellowtail culture development and solutions for the future. Rev Fish Sci 10:559–575
Google Scholar
Moran D, Wells RMG, Pether SJ (2008) Low stress response exhibited by juvenile yellowtail kingfish (Seriola lalandi Valenciennes) exposed to hypercapnic conditions associated with transportation. Aquac Res 39:1399–1407
CAS
Google Scholar
Ramírez C, Romero J (2017) The microbiome of Seriola lalandi of wild and aquaculture origin reveals differences in composition and potential function. Front Microbiol 8:1–10
Google Scholar
Poortenaar CW, Hooker SH, Sharp N (2001) Assessment of yellowtail kingfish (Seriola lalandi) reproductive physiology, as a basis for aquaculture development. Aquaculture 201:271–286
Google Scholar
Fielder S, Heasman M (2011) Hatchery manual for the production of Australian bass, mulloway and yellowtail kingfish Industry & Investment NSW, ISBN 978 1 74256 058 8. 176 pp
Toranzo AE, Magariños B, Romalde JL (2005) A review of the main bacterial fish diseases in mariculture systems. Aquaculture 246:37–61
Google Scholar
Dang H, Zhang X, Song L et al (2006) Molecular characterizations of oxytetracycline resistant bacteria and their resistance genes from mariculture waters of China. Mar Pollut Bull 52:1494–1503
CAS
PubMed
Google Scholar
Miranda CD, Godoy FA, Lee MR (2018) Current status of the use of antibiotics and the antimicrobial resistance in the Chilean salmon farms. Front Microbiol 9:1–14
CAS
Google Scholar
Pindling S, Azulai D, Zheng B et al (2018) Dysbiosis and early mortality in zebrafish larvae exposed to subclinical concentrations of streptomycin. FEMS Microbiol Lett 365:1–9
Google Scholar
Schmidt V, Gomez-Chiarri M, Roy C et al (2017) Subtle microbiome manipulation using probiotics reduces antibiotic-associated mortality in fish. mSystems 2:1–13
Google Scholar
He S, Wang Q, Li S et al (2017) Antibiotic growth promoter olaquindox increases pathogen susceptibility in fish by inducing gut microbiota dysbiosis. Sci China Life Sci 60:1260–1270
CAS
PubMed
Google Scholar
Wang E, Yuan Z, Wang K et al (2019) Consumption of florfenicol-medicated feed alters the composition of the channel catfish intestinal microbiota including enriching the relative abundance of opportunistic pathogens. Aquaculture 501:111–118
CAS
Google Scholar
Gram L, Melchiorsen J, Spanggaard B et al (1999) Inhibition of Vibrio anguillarum by Pseudomonas fluorescens AH2, a possible probiotic treatment of fish. Appl Environ Microbiol 65:969–973
CAS
PubMed
PubMed Central
Google Scholar
Spanggaard B, Huber I, Nielsen J et al (2001) The probiotic potential against vibriosis of the indigenous microflora of rainbow trout. Environ Microbiol 3:755–765
CAS
PubMed
Google Scholar
Seghouani H, Garcia-Rangel CE, Füller J et al (2017) Walleye autochthonous bacteria as promising probiotic candidates against Flavobacterium columnare. Front Microbiol 8:1–9
Google Scholar
Lazado CC, Caipang CMA, Gallage S et al (2010) Expression profiles of genes associated with immune response and oxidative stress in Atlantic cod, Gadus morhua head kidney leukocytes modulated by live and heat-inactivated intestinal bacteria. Comp Biochem Physiol Part B 155:249–255
Google Scholar
Beck BR, Kim D, Jeon J et al (2015) The effects of combined dietary probiotics Lactococcus lactis BFE920 and Lactobacillus plantarum FGL0001 on innate immunity and disease resistance in olive flounder (Paralichthys olivaceus). Fish Shellfish Immunol 42:177–183
CAS
Google Scholar
Mohammadian T, Alishahi M, Tabandeh MR et al (2017) Changes in immunity, expression of some immune-related genes of shabot fish, Tor grypus, following experimental infection with Aeromonas hydrophila: effects of autochthonous probiotics. Probiotics Antimicrob Proteins 10:616–628
Google Scholar
Mohammadian T, Alishahi M, Tabandeh MR et al (2018) Effects of autochthonous probiotics, isolated from Tor grypus (Karaman, 1971) intestine and Lactobacillus casei (PTCC 1608) on expression of immune-related genes. Aquac Int 27:239–260
Google Scholar
Balcázar JL, de Blas I, Ruiz-Zarzuela I et al (2006) The role of probiotics in aquaculture. Vet Microbiol 114:173–186
PubMed
PubMed Central
Google Scholar
Zorriehzahra MJ, Delshad ST, Adel M et al (2016) Probiotics as beneficial microbes in aquaculture: an update on their multiple modes of action: a review. Vet Q 36:228–241
PubMed
PubMed Central
Google Scholar
Verschuere L, Rombaut G, Sorgeloos P, Verstraete W (2000) Probiotic bacteria as biological control agents in aquaculture. Microbiol Mol Biol Rev 64:655–671
CAS
PubMed
PubMed Central
Google Scholar
Kesarcodi-Watson A, Kaspar H, Lategan MJ, Gibson L (2008) Probiotics in aquaculture: the need, principles and mechanisms of action and screening processes. Aquaculture 274:1–14
Google Scholar
Makridis P, Martins S, Reis J, Dinis MT (2008) Use of probiotic bacteria in the rearing of Senegalese sole (Solea senegalensis) larvae. Aquac Res 39:627–634
Google Scholar
Caipang CMA, Brinchmann MF, Kiron V (2010) Antagonistic activity of bacterial isolates from intestinal microbiota of Atlantic cod, Gadus morhua, and an investigation of their immunomodulatory capabilities. Aquac Res 41:249–256
Google Scholar
Sharifuzzaman SM, Austin B (2010) Kocuria SM1 controls vibriosis in rainbow trout (Oncorhynchus mykiss, Walbaum). J Appl Microbiol 108:2162–2170
CAS
PubMed
Google Scholar
He S, Zhang Y, Xu L et al (2013) Effects of dietary Bacillus subtilis C-3102 on the production, intestinal cytokine expression and autochthonous bacteria of hybrid tilapia Oreochromis niloticus ♂×Oreochromis aureus ♀. Aquaculture 412–413:125–130
Google Scholar
Sun YZ, Yang HL, Huang KP et al (2013) Application of autochthonous Bacillus bioencapsulated in copepod to grouper Epinephelus coioides larvae. Aquaculture 392–395:44–50
Google Scholar
Tapia-Paniagua ST, Vidal S, Lobo C et al (2014) The treatment with the probiotic Shewanella putrefaciens Pdp11 of specimens of Solea senegalensis exposed to high stocking densities to enhance their resistance to disease. Fish Shellfish Immunol 41:209–221
CAS
PubMed
Google Scholar
Giri SS, Sukumaran V, Sen SS, Jena PK (2014) Effects of dietary supplementation of potential probiotic Bacillus subtilis VSG1 singularly or in combination with Lactobacillus plantarum VSG3 or/and Pseudomonas aeruginosa VSG2 on the growth, immunity and disease resistance of Labeo rohita. Aquac Nutr 20:163–171
CAS
Google Scholar
Nayak SK (2010) Role of gastrointestinal microbiota in fish. Aquac Res 41:1553–1573
Google Scholar
Mills S, Stanton C, Fitzgerald GF, Ross RP (2011) Enhancing the stress responses of probiotics for a lifestyle from gut to product and back again. Microb Cell Factories 10:S19
Google Scholar
Romero J, Navarrete P (2014) Marine vertebrate animal metagenomics, Salmonidae: the microbiota of the digestive tract of salmonids. In: Highlander SK, Rodriguez-Valera F, White BA (eds) Encyclopedia of metagenomics. Springer, Boston, pp 1–7
Google Scholar
Berg R (1996) The indigenous gastrointestinal microflora. Trends Microbiol 4:430–435
CAS
PubMed
Google Scholar
Rawls JF, Samuel BS, Gordon JI (2004) Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota. Proc Natl Acad Sci U S A 101:4596–4601
CAS
PubMed
PubMed Central
Google Scholar
Chabrillón M, Rico RM, Arijo S et al (2005) Interactions of microorganisms isolated from gilthead sea bream, Sparus aurata L., on Vibrio harveyi, a pathogen of farmed Senegalese sole, Solea senegalensis (Kaup). J Fish Dis 28:531–537
PubMed
Google Scholar
Dethlefsen L, McFall-Ngai M, Relman DA (2007) An ecological and evolutionary perspective on humang-microbe mutualism and disease. Nature 449:811–818
CAS
PubMed
Google Scholar
Ley RE, Lozupone CA, Hamady M et al (2009) Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev Microbiol 6:776–788
Google Scholar
Hooper LV, Littman DR, Macpherson AJ (2012) Interactions between the microbiota and the immune system. Science 336(80):1268–1273
CAS
PubMed
PubMed Central
Google Scholar
Rosshart SP, Vassallo BG, Angeletti D et al (2017) Wild mouse gut microbiota promotes host fitness and improves disease resistance. Cell 171:1015–1028
CAS
PubMed
PubMed Central
Google Scholar
Bacanu GM, Lucian O (2013) Differences in the gut microbiota between wild and domestic Acipenser ruthenus evaluated by denaturing gradient gel electrophoresis. Rom Biotechnol Lett 18:8069–8076
CAS
Google Scholar
Kim D-H, Kim D (2013) Microbial diversity in the intestine of olive flounder (Paralichthys olivaceus). Aquaculture 414–15:103–108
Google Scholar
Dhanasiri AKS, Brunvold L, Brinchmann MF et al (2011) Changes in the intestinal microbiota of wild Atlantic cod Gadus morhua l. upon captive rearing. Microb Ecol 61:20–30
PubMed
Google Scholar
Ramírez C, Romero J (2017) Fine flounder (Paralichthys adspersus) microbiome showed important differences between wild and reared specimens. Front Microbiol 8:1–12
Google Scholar
Dopazo CP, Lemos ML, Lodeiros C et al (1988) Inhibitory activity of antibiotic producing marine bacteria against fish pathogens. J Appl Bacteriol 65:97–101
CAS
PubMed
Google Scholar
Leyton Y, Riquelme C (2010) Marine Bacillus spp. associated with the egg capsule of Concholepas concholepas (common name “loco”) have an inhibitory activity toward the pathogen Vibrio parahaemolyticus. Microb Ecol 60:599–605
PubMed
Google Scholar
Dannevig B, Brudeseth B, Gjoen T et al (1997) Characterisation of a long-term cell line (SHK-1) developed from the head kidney of Atlantic salmon (Salmo salar L.). Fish Shellfish Immunol 7:213–226
Google Scholar
Vourc’h M, Roquilly A, Broquet A et al (2017) Exoenzyme T plays a pivotal role in the IFN-γ production after Pseudomonas challenge in IL-12 primed natural killer cells. Front Immunol 8:2–10
Google Scholar
CLSI (2006) Methods for antimicrobial disk susceptibility testing of bacteria isolated from aquatic animals, approved guideline M42-A. Clinical and Laboratory Standards Institute, Wayne
Google Scholar
Miranda CD, Rojas R (2007) Occurrence of florfenicol resistance in bacteria associated with two Chilean salmon farms with different history of antibacterial usage. Aquaculture 266:39–46
CAS
Google Scholar
Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29:e45
CAS
PubMed
PubMed Central
Google Scholar
Sun Y, Yang H, Ling Z et al (2009) Gut microbiota of fast and slow growing grouper. Afr J Microbiol Res 3:713–720
Google Scholar
Balakrishna A, Keerthi TR (2012) Screening of potential aquatic probiotics from the major microflora of guppies (Poecilia reticulata). Front Chem Sci Eng 6:163–173
CAS
Google Scholar
Hoseinifar SH, Sun YZ, Wang A, Zhou Z (2018) Probiotics as means of diseases control in aquaculture, a review of current knowledge and future perspectives. Front Microbiol 9:1–18
Google Scholar
Lazado CC, Caipang CMA (2014) Mucosal immunity and probiotics in fish. Fish Shellfish Immunol 39:78–89
CAS
PubMed
Google Scholar
Muñoz-Atienza E, Araújo C, Magadán S et al (2014) In vitro and in vivo evaluation of lactic acid bacteria of aquatic origin as probiotics for turbot (Scophthalmus maximus L.) farming. Fish Shellfish Immunol 41:570–580
PubMed
Google Scholar
Cordero H, Morcillo P, Meseguer J et al (2016) Effects of Shewanella putrefaciens on innate immunity and cytokine expression profile upon high stocking density of gilthead seabream specimens. Fish Shellfish Immunol 51:33–40
CAS
PubMed
Google Scholar
Bayne CJ, Gerwick L (2001) The acute phase response and innate immunity of fish. Dev Comp Immunol 25:725–743
CAS
PubMed
Google Scholar
Mukaida N, Shiroo M, Matsushima K (1989) Genomic structure of the human monocyte-derived neutrophil chemotactic factor IL-8. J Immunol 143:1366–1371
CAS
PubMed
Google Scholar
Giri SS, Sen SS, Jun JW et al (2016) Heat-killed whole-cell products of the probiotic Pseudomonas aeruginosa VSG2 strain affect in vitro cytokine expression in head kidney macrophages of Labeo rohita. Fish Shellfish Immunol 50:310–316
CAS
PubMed
Google Scholar
Shah C, Hari-dass R, Raynes JG (2006) Serum amyloid A is an innate immune opsonin for Gram-negative bacteria. Blood 108:1–34
Google Scholar
Jensen L, Hiney M, Shields D et al (1997) Acute phase proteins in salmonids. Evolutionary analyses and acute phase response. J Immunol 158:384–392
CAS
PubMed
Google Scholar
Kania PW, Chettri JK, Buchmann K (2014) Characterization of serum amyloid A (SAA) in rainbow trout using a new monoclonal antibody. Fish Shellfish Immunol 40:648–658
CAS
PubMed
Google Scholar
Muncaster S, Kraakman K, Gibbons O et al (2018) Antimicrobial peptides within the yellowtail kingfish (Seriola lalandi). Dev Comp Immunol 80:67–80
CAS
PubMed
Google Scholar
Álvarez CA, Acosta F, Montero D et al (2016) Synthetic hepcidin from fish: uptake and protection against Vibrio anguillarum in sea bass (Dicentrarchus labrax). Fish Shellfish Immunol 55:662–670
PubMed
Google Scholar
Álvarez CA, Guzmán F, Cárdenas C et al (2014) Antimicrobial activity of trout hepcidin. Fish Shellfish Immunol 41:93–101
PubMed
Google Scholar
Jiang XF, Liu ZF, Lin AF et al (2017) Coordination of bactericidal and iron regulatory functions of hepcidin in innate antimicrobial immunity in a zebrafish model. Sci Rep 7:1–15
Google Scholar
Meidong R, Khotchanalekha K, Doolgindachbaporn S et al (2018) Evaluation of probiotic Bacillus aerius B81e isolated from healthy hybrid catfish on growth, disease resistance and innate immunity of Pla-mong Pangasius bocourti. Fish Shellfish Immunol 73:1–10
CAS
PubMed
PubMed Central
Google Scholar
Das A, Nakhro K, Chowdhury S, Kamilya D (2013) Effects of potential probiotic Bacillus amyloliquifaciens FPTB16 on systemic and cutaneous mucosal immune responses and disease resistance of catla (Catla catla). Fish Shellfish Immunol 35:1547–1553
CAS
PubMed
Google Scholar
Sangma T, Kamilya D (2015) Dietary Bacillus subtilis FPTB13 and chitin, single or combined, modulate systemic and cutaneous mucosal immunity and resistance of catla, Catla catla (Hamilton) against edwardsiellosis. Comp Immunol Microbiol Infect Dis 43:8–15
PubMed
Google Scholar
Giri SS, Sen SS, Sukumaran V (2012) Effects of dietary supplementation of potential probiotic Pseudomonas aeruginosa VSG-2 on the innate immunity and disease resistance of tropical freshwater fish, Labeo rohita. Fish Shellfish Immunol 32:1135–1140
CAS
PubMed
PubMed Central
Google Scholar
Ramesh D, Vinothkanna A, Rai AK, Vignesh VS (2015) Isolation of potential probiotic Bacillus spp. and assessment of their subcellular components to induce immune responses in Labeo rohita against Aeromonas hydrophila. Fish Shellfish Immunol 45:268–276
CAS
PubMed
PubMed Central
Google Scholar
Lin B, Chen S, Cao Z et al (2007) Acute phase response in zebrafish upon Aeromonas salmonicida and Staphylococcus aureus infection: striking similarities and obvious differences with mammals. Mol Immunol 44:295–301
CAS
PubMed
Google Scholar
Makled S, Hamdan A, El-Sayed A-F, Hafez E (2017) Evaluation of marine psychrophile, Psychrobacter namhaensis SO89, as a probiotic in Nile tilapia (Oreochromis niloticus) diets. Fish Shellfish Immunol 61:194–200
CAS
PubMed
PubMed Central
Google Scholar
Ramos MA, Gonçalves JFM, Batista S et al (2015) Growth, immune responses and intestinal morphology of rainbow trout (Oncorhynchus mykiss) supplemented with commercial probiotics. Fish Shellfish Immunol 45:19–26
CAS
PubMed
Google Scholar
Pfeifer Y, Cullik A, Witte W (2010) Resistance to cephalosporins and carbapenems in Gram-negative bacterial pathogens. Int J Med Microbiol 300:371–379
CAS
PubMed
Google Scholar
Kittinger C, Lipp M, Baumert R et al (2016) Antibiotic resistance patterns of Pseudomonas spp. isolated from the river Danube. Front Microbiol 7:1–8
Google Scholar
Livermore DM (2002) Multiple mechanisms of antimicrobial resistance in Pseudomonas aeruginosa: our worst nightmare? Clin Infect Dis 34:634–640
CAS
PubMed
Google Scholar
Shin HW, Lim J, Kim S et al (2014) Characterization of trimethoprim-sulfamethoxazole resistance genes and their relatedness to class 1 integron and insertion sequence common region in gram-negative bacilli. J Microbiol Biotechnol 25:137–142
Google Scholar
Doublet B, Schwarz S, Kehrenberg C, Cloeckaert A (2005) Florfenicol resistance gene floR is part of a novel transposon. Antimicrob Agents Chemother 49:2106–2108
CAS
PubMed
PubMed Central
Google Scholar
Gordon L, Cloeckaert A, Doublet B et al (2008) Complete sequence of the floR-carrying multiresistance plasmid pAB5S9 from freshwater Aeromonas bestiarum. J Antimicrob Chemother 62:65–71
CAS
PubMed
Google Scholar
Kehrenberg C, Schwarz S (2006) Distribution of florfenicol resistance genes fexA and cfr among chloramphenicol-resistant Staphylococcus isolates. Antimicrob Agents Chemother 50:1156–1163
CAS
PubMed
PubMed Central
Google Scholar
Whitehead J (2009) Intestinal alkaline phosphatase: the molecular link between rosacea and gastrointestinal disease? Med Hypotheses 73:1019–1022
CAS
PubMed
Google Scholar
Ray AK, Ghosh K, Ringø E (2012) Enzyme-producing bacteria isolated from fish gut: a review. Aquac Nutr 18:465–492
CAS
Google Scholar