Abstract
Listeria monocytogenes is a Gram-positive, non-spore forming, catalase-positive rod that is a major bacterial food-borne disease agent associated with uncooked meats, including poultry, uncooked vegetables, soft cheeses, and unpasteurized milk. The bacterium may be carried by animals without signs of disease, can replicate at refrigeration temperatures, and is frequently associated with biofilms. There is a need to discover innovative pathogen intervention technologies for this bacterium. Consequently, bioinformatic analyses were used to identify genes encoding lytic protein sequences in the genomes of L. monocytogenes isolates. PCR primers were designed that amplified nucleotide sequences of a putative N-acetylmuramoyl-l-alanine amidase gene from L. monocytogenes strain 4b. The resultant amplification product was cloned into an expression vector, propagated in Escherichia coli Rosetta strains, and the recombinant protein was purified to homogeneity. Gene and protein sequencing confirmed that the predicted and chemically determined amino acid sequence of the recombinant protein designated PlyLM was a putative N-acetylmuramoyl-l-alanine amidase. The recombinant lytic protein was capable of lysing both the parental L. monocytogenes strain as well as other strains of the bacterium in spot and MIC/MIB assays, but was not active against other bacteria beyond the genus. A microtiter plate assay was utilized to assay for the ability of the recombinant lysin protein to potentially aid with digestion of a L. monocytogenes biofilm. Protease or lysozyme digestion alone did not significantly reduce the L. monocytogenes biofilm. Although the recombinant protein alone reduced the biofilm by only 20%, complete digestion of the bacterial monolayer was accomplished in conjunction with a protease.
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Amalaradjou MA, Norris CE, Venkitanarayanan K (2009) Effect of octenidine hydrochloride on planktonic cells and biofilms of Listeria monocytogenes. Appl Environ Microbiol 75(12):4089–4092
Andersson AF, Banfield JF (2008) Virus population dynamics and acquired virus resistance in natural microbial communities. Science 320(5879):1047–1050
Andrews JM (2001) Determination of minimum inhibitory concentrations. J Antimicrob Chemother 48(Suppl 1):5–16
Azeredo J, Sutherland IW (2008) The use of phages for the removal of infectious biofilms. Curr Pharm Biotechnol 9(4):261–266
Barton Behravesh C, Jones TF, Vugia DJ, Long C, Marcus R, Smith K, Thomas S, Zansky S, Fullerton KE, Henao OL, Scallan E, Group FoodNetWorking (2011) Deaths associated with bacterial pathogens transmitted commonly through food: foodborne diseases active surveillance network (FoodNet), 1996–2005. J Infect Dis 204(2):263–267
Becker SC, Foster-Frey J, Donovan DM (2008) The phage K lytic enzyme LysK and lysostaphin act synergistically to kill MRSA. FEMS Microbiol Lett 287(2):185–191
Becker SC, Foster-Frey J, Stodola AJ, Anacker D, Donovan DM (2009) Differentially conserved staphylococcal SH3b cell wall binding domains confer increased staphylolytic and strepolytic activity to a streptococcal prophage endolysin domain. Gene 443(1–2):32–41
Berrang ME, Meinersmann RJ, Frank JF, Smith DP, Genzlinger LL (2005) Distribution of Listeria monocytogenes subtypes within a poultry further processing plant. J Food Prot 68(5):980–985
Blackman IC, Frank JF (1996) Growth of Listeria monocytogenes as a biofilm on various food-processing surfaces. J Food Prot 59(9):827–831
Borucki MK, Kim SH, Call DR, Smole SC, Pagotto F (2004) Selective discrimination of Listeria monocytogenes epidemic strains by a mixed-genome DNA microarray compared to discrimination by pulsed-field gel electrophoresis, ribotyping and multilocus sequence typing. J Clin Microbiol 42:5270–5276
Borucki MK, Peppin JD, White D, Loge F, Call DR (2003) Variation in biofilm formation among strains of Listeria monocytogenes. Appl Environ Microbiol 69(12):7336–7342
Brandt AL, Castillo A, Harris KB, Keeton JT, Hardin MD, Taylor TM (2010) Inhibition of Listeria monocytogenes by food antimicrobials applied singly and in combination. J Food Sci 75(9):M557–M563
Bublitz M, Polle L, Holland C, Heinz DW, Nimtz M, Schubert W-D (2009) Structural basis for autoinhibition and activation of Auto, a virulence-associated peptidoglycan hydrolase of Listeria monocytogenes. Mol Microbiol 71(6):1509–1522
Buchrieser C (2007) Biodiversity of the species Listeria monocytogenes and the genus Listeria. Microbes Infect 9(10):1147–1155
Caro A, Humblot V, Méthivier C, Minier M, Barbes L, Li J, Salmain M, Pradier CM (2010) Bioengineering of stainless steel surface by covalent immobilization of enzymes. Physical characterization and interfacial enzymatic activity. J Colloid Interface Sci 349(1):13–18
Caro A, Humblot V, Méthivier C, Minier M, Salmain M, Pradier CM (2009) Grafting of lysozyme and/or poly(ethylene glycol) to prevent biofilm growth on stainless steel surfaces. J Phys Chem B 113(7):2101–2109
Carson L, Gorman SP, Gilmore BF (2010) The use of lytic bacteriophages in the prevention and eradication of biofilms of Proteus mirabilis and Escherichia coli. FEMS Immunol Med Microbiol 59(3):447–455
Cerca N, Olivereira R, Azeredo J (2007) Susceptibility of Staphylococcus epidermis planktonic cells and biofilms to the lytic action of staphylococcus bacteriophage K. Lett Appl Microbiol 45(3):313–317
Chen J, Novick RP (2009) Phage-mediated intergenic transfer of toxin genes. Science 323(5910):139–141
Crowe J, Döbeli H, Gentz R, Hochuli E, Stüber D, Henco K (1994) 6xHis-Ni-NTA chromatography as a superior technique in recombinant protein expression/purification. Methods Mol Biol 31:371–387
Djordjevic D, Wiedmann M, McLandsborough LA (2002) Microtiter plate assay for assessment of Listeria monocytogenes biofilm formation. Appl Environ Microbiol 68(6):2950–2958
Donovan DM (2007) Bacteriophage and peptidoglycan degrading enzymes with antimicrobial applications. Recent Pat Biotechnol 1(2):113–122
Donovan DM, Dong S, Garrett W, Rousseau GM, Moineau S, Pritchard DG (2006) Peptidoglycan hydrolase fusions maintain their parental specificities. Appl Environ Microbiol 72(4):2988–2996
Doumith M, Buchrieser C, Glaser P, Jacquet C, Martin P (2004) Differentiation of the major Listeria monocytogenes serovars by multiplex PCR. J Clin Microbiol 42(8):3819–3822
Doumith M, Cazalet C, Simoes N, Frangeul L, Jaquet C, Kunst F, Martin P, Cossart O, Glaser P, Buchrieser C (2004) New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics. Infect Immun 72(2):1072–1083
Edgar RC (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113
Fischetti VA (2005) Bacteriophage lytic enzymes: novel anti-infectives. Trends Microbiol 13(10):491–496
Fischetti VA (2008) Bacteriophage lysins as effective antibacterials. Curr Opin Microbiol 11(5):393–400
Franciosa G, Maugliani A, Scalfaro C, Floridi F, Aureli P (2009) Expression of internalin A and biofilm formation among Listeria monocytogenes clinical isolates. Int J Immunopathol Pharmacol 22(1):183–193
Fu W, Forster T, Mayer O, Curtin JJ, Lehman SM, Donlan RM (2010) Bacteriophage cocktail for the prevention of biofilm formation by Pseudomonas aeruginosa on catheters in an in vitro model system. Antimicrob Agents Chemother 54(1):397–404
Fugett E, Fortes E, Nnoka C, Wiedmann W (2006) International Life Sciences Institute North America Listeria monocytogenes strain collection development of standard Listeria monocytogenes strain sets for research and validation studies. J Food Prot 69(12):2929–2938
Gandhi M, Chikindas ML (2007) Listeria: a foodborne pathogen that knows how to survive. Int J Food Microbiol 113(1):1–15
Glaser P, Frangeul L, Buchrieser C, Rusniok C, Amend A, Baquero F, Berche P, Bloecker H, Brandt P, Chakraborty T, Charbit A, Chetouani F, Couvé E, de Daruvar A, Dehoux P, Domann E, Domínguez-Bernal G, Duchaud E, Durant L, Dussurget O, Entian KD, Fsihi H, García-del Portillo F, Garrido P, Gautier L, Goebel W, Gómez-López N, Hain T, Hauf J, Jackson D, Jones LM, Kaerst U, Kreft J, Kuhn M, Kunst F, Kurapkat G, Madueno E, Maitournam A, Vicente JM, Ng E, Nedjari H, Nordsiek G, Novella S, de Pablos B, Pérez-Diaz JC, Purcell R, Remmel B, Rose M, Schlueter T, Simoes N, Tierrez A, Vázquez-Boland JA, Voss H, Wehland J, Cossart P (2001) Comparative genomics of Listeria species. Science 294(5543):849–852
Grandgirard D, Loeffler JM, Fischetti VA, Leib SL (2008) Phage lytic enzyme Cpl-1 for antibacterial therapy in experimental pneumococcal meningitis. J Infect Dis 197(11):1519–1522
Gyles CL (2008) Antimicrobial resistance in selected bacteria from poultry. Anim Health Res Rev 9(2):149–158
Hames BD (1990) One-dimensional polyacrylamide gel electrophoresis. In: Hames BD, Rickwood D (eds) Gel electrophoresis of proteins: a practical approach, 2nd edn. Oxford University Press, NY, pp 1–147
Harmsen M, Lappann M, Knøchel S, Molin S (2010) Role of extracellular DNA during biofilm formation by Listeria monocytogenes. Appl Environ Microbiol 76(7):2271–2279
Hiett KL, Stintzi A, Andacht T, Kuntz RL, Seal BS (2008) Genomic differences between Campylobacter jejuni isolates identify surface membrane and flagellar gene products potentially important for colonizing the chicken intestine. Funct Integr Genomics 8(4):407–420
Hughes KA, Sutherland IW, Jones MV (1998) Biofilm susceptibility to bacteriophage attack: the role of phage-borne polysaccharide depolymerase. Microbiology 144(11):3039–3047
Hunt DF, Yates JR 3rd, Shabanowitz J, Winston S, Hauer CR (1986) Protein sequencing by tandem mass spectrometry. Proc Natl Acad Sci USA 83(17):6233–6237
Kane JF (1995) Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr Opin Biotechnol 6:494–500
Kaplan JB (2009) Therapeutic potential of biofilm-dispersing enzymes. Int J Artif Organs 32(9):545–554
Kristensen T, Voss H, Schwager C, Stegemann J, Sproat B, Ansorge W (1998) T7 DNA polymerase in automated dideoxy sequencing. Nucleic Acids Res 16(8):3487–3496
Lang LH (2006) FDA approves use of bacteriophages to be added to meat and poultry products. Gastroenterology 131(5):1370
Leverentz B, Conway WS, Camp MJ, Janisiewicz W, Abuladze T, Yang M, Saftner R, Sulakvelidze A (2003) Biocontrol of Listeria monocytogenes on fresh-cut produce by treatment with lytic bacteriophages and a bacteriocin. Appl Environ Microbiol 69(8):4519–4526
Loeffler JM, Djurkovic S, Fischetti VA (2003) Phage lytic enzyme Cpl-1 as a novel antimicrobial for pneumococcal bacteremia. Infect Immun 71(11):6199–6204
Loessner MJ, Kramer K, Ebel F, Scherer S (2002) C-terminal domains of Listeria monocytogenes bacteriophage murein hydrolases determines specific recognition and high-affinity binding to bacterial cell wall carbohydrates. Mol Microbiol 44(2):335–349
Loessner MJ, Wendlinger G, Scherer S (1995) Heterogeneous endolysins in Listeria monocytogenes bacteriophages: a new class of enzymes and evidence for conserved holin genes within the siphoviral lysis cassettes. Mol Microbiol 16(6):1231–1241
Longhi C, Scoarughi GL, Poggiali F, Cellini A, Carpentieri A, Seganti L, Pucci P, Amoresano A, Cocconcelli PS, Artini M, Costerton JW, Selan L (2008) Protease treatment affects both invasion ability and biofilm formation in Listeria monocytogenes. Microb Pathog 45(1):45–52
Low LY, Yang C, Perego M, Osterman A, Liddington RC (2005) Structure and lytic activity of a Bacillus anthracis prophage endolysin. J Biol Chem 280(42):35433–35439
Mangalassary S, Han I, Rieck J, Acton J, Dawson P (2008) Effect of combining nisin and/or lysozyme with in-package pasteurization for control of Listeria monocytogenes in ready-to-eat turkey bologna during refrigerated storage. Food Microbiol 25(7):866–870
Makobongo MO, Kovachi T, Gancz H, Mor A, Merrell DS (2009) In vitro antibacterial activity of acyl-lysyl oligomers against Helicobacter pylori. Antimicrob Agents Chemother 53(10):4231–4239
Mavromatis K, Chu K, Ivanova N, Hooper SD, Markowitz VM, Kyrpides NC (2009) Gene context analysis in the Integrated Microbial Genomes (IMG) data management system. PLoS One 4(11): e7979
Nathan C, Goldberg FM (2005) The profit problem in antibiotic R&D. Nat Rev Drug Discov 4(11):887–891
Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR, Paulsen IT, Peterson J, White O, Nelson WC, Nierman W, Beanan MJ, Brinkac LM, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Haft DH, Selengut J, Van Aken S, Khouri H, Fedorova N, Forberger H, Tran B, Kathariou S, Wonderling LD, Uhlich GA, Bayles DO, Luchansky JB, Fraser CM (2004) Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic Acids Res 32(8):2386–2395
Niall HD (1973) Automated Edman degradation: the protein sequenator. Methods Enzymol 27:942–1010
Nostro A, Scaffaro R, Ginestra G, D’Arrigo M, Botta L, Marino A, Bisignano G (2010) Control of biofilm formation by poly-ethylene-co-vinyl acetate films incorporating nisin. Appl Microbiol Biotechnol 87(2):729–737
Orgaz B, Lobete MM, Puga CH, Jose CS (2011) Effectiveness of chitosan against mature biofilms formed by food related bacteria. Int J Mol Sci 12(1):817–828
O’Toole GA, Kolter R (1998) Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signaling pathways: a genetic analysis. Mol Microbiol 28(3):449–461
Pan Y, Breidt F Jr, Gorski L (2010) Synergistic effects of sodium chloride, glucose, and temperature on biofilm formation by Listeria monocytogenes serotype 1/2a and 4b strains. Appl Environ Microbiol 76(5):1433–1441
Pan Y, Breidt F Jr, Kathariou S (2006) Resistance of Listeria monocytogenes biofilms to sanitizing agents in a simulated food processing environment. Appl Environ Microbiol 72(12):7711–7717
Pan Y, Breidt F Jr, Kathariou S (2009) Competition of Listeria monocytogenes serotypes 1/2a and 4b strains in mixed-culture biofilms. Appl Environ Microbiol 75(18):5846–5852
Pérez-Conesa D, Cao J, Chen L, McLandsborough L, Weiss J (2011) Inactivation of Listeria monocytogenes and Escherichia coli O157:H7 biofilms by micelle-encapsulated eugenol and carvacrol. J Food Prot 74(1):55–62
Popowska M, Markiewicz Z (2006) Characterization of Listeria monocytogenes protein Lmo0327 with murein hydrolase activity. Arch Microbiol 186(1):69–86
Pritchard DG, Dong S, Baker JR, Engler JA (2004) The bifunctional peptidoglycan lysin of Streptococcus agalactiae bacteriophage B30. Microbiology 150(7):2079–2087
Ragon M, Wirth T, Hollandt F, Lavenir R, Lecuit M, Le Monnier A, Brisse S (2008) A new perspective on Listeria monocytogenes evolution. PLoS Pathog 4(9):e1000146
Renier S, Hébraud M, Desvaux M (2011) Molecular biology of surface colonization by Listeria monocytogenes: an additional facet of an opportunistic Gram-positive foodborne pathogen. Environ Microbiol 13(4):835–850
Rieu A, Lemaître JP, Guzzo J, Piveteau P (2008) Interactions in dual species biofilms between Listeria monocytogenes EGD-e and several strains of Staphylococcus aureus. Int J Food Microbiol 126(1–2):76–82
Rosenfeld J, Capdevielle J, Guillemot JC, Ferrara P (1992) In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis. Anal Biochem 203(1):173–179
Saá Ibusquiza P, Herrera JJ, Cabo ML (2011) Resistance to benzalkonium chloride, peracetic acid and nisin during formation of mature biofilms by Listeria monocytogenes. Food Microbiol 28(3):418–425
Sambrook J, Russell DW (2001) Molecular Cloning, a Laboratory Manual, Cold Spring Harbor Laboratory Press, 3rd edition, Cold Spring Harbor, NY
Sandasi M, Leonard CM, Viljoen AM (2010) The in vitro antibiofilm activity of selected culinary herbs and medicinal plants against Listeria monocytogenes. Lett Appl Microbiol 50(1):30–35
Sass P, Bierbaum G (2007) Lytic activity of recombinant bacteriophage Φ11 and Φ12 endolysins on whole cells and biofilms of Staphylococcus aureus. Appl Environ Microbiol 73(1):347–352
Scallan E, Hoekstra RM, Angulo FJ, Tauxe RV, Widdowson MA, Roy SL, Jones JL, Griffin PM (2011) Foodborne illness acquired in the United States–major pathogens. Emerg Infect Dis 17(1):7–15
Schäffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, Wolf YI, Koonin EV, Altschul SF (2001) Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res 29(14):2994–3005
Schmitz JE, Ossiprandi MC, Rumah KR, Fischetti VA (2011) Lytic enzyme discovery through multigenomic sequence analysis in Clostridium perfringens. Appl Microbiol Biotechnol 89(6):1783–1795
Schmitz JE, Schuch R, Fischetti VA (2010) Identifying active phage lysins through functional viral metagenomics. Appl Environ Microbiol 76(21):7181–7187
Schuch R, Nelson D, Fischetti VA (2002) A bacteriolytic agent that detects and kills Bacillus anthracis. Nature 418(6900):884–889
Shen Y, Liu Y, Zhang Y, Cripe J, Conway W, Meng J, Hall G, Bhagwat AA (2006) Isolation and characterization of Listeria monocytogenes isolates from ready-to-eat foods in Florida. Appl Environ Microbiol 72(7):5073–5076
Sillankorva S, Neubauer P, Azeredo J (2010) Phage control of dual species biofilms of Pseudomonas fluorescens and Staphylococcus lentus. Biofouling 26(5):567–575
Simmons M, Donovan DM, Siragusa GR, Seal BS (2010) Recombinant expression of two bacteriophage proteins that lyse Clostridium perfringens and share identical sequences in the C-terminal cell wall binding domain of the molecules but are dissimilar in their N-terminal active domains. J Agric Food Chem 58(19):10330–10337
Smith LM, Sanders JZ, Kaiser RJ, Hughs P, Dodd C, Connell CR, Heines C, Kent SBH, Hood LE (1986) Fluorescence detection in automated DNA sequence analysis. Nature 321(6071):673–681
Son JS, Lee SJ, Jun SY, Yoon SJ, Kang SH, Paik HR, Kang JO, Choi YJ (2010) Antibacterial and biofilm removal activity of a podoviridae Staphylococcus aureus bacteriophage SAP-2 and a derived recombinant cell-wall-degrading enzyme. Appl Microbiol Biotechnol 86(5):1439–1449
Soni KA, Nannapaneni R (2010) Removal of Listeria monocytogenes biofilms with bacteriophage P100. J Food Prot 73(8):1519–1524
Swaminathan B, Gerner-Smidt P (2007) The epidemiology of human listeriosis. Microbes Infect 9(10):1236–1243
Swaminathan B (2001) Listeria monocytogenes. In: Doyle MP, Beuchat LR, Montville TJ (eds) Food microbiology: fundamentals and frontiers, 2nd edn. ASM Press, Washington, pp 337–352
Turner MS, Waldherr F, Loessner MJ, Giffard PM (2007) Antimicrobial activity of lysostaphin and a Listeria monocytogenes bacteriophage endolysin produced and secreted by lactic acid bacteria. Syst Appl Microbiol 30(1):58–67
Vollmer W, Joris B, Charlier P, Foster S (2008) Bacterial peptidoglycan (murein) hydrolases. FEMS Microbiol Rev 32(2):259–286
Wang L, Lin M (2008) A novel cell wall-anchored peptidoglycan hydrolase (autolysin), IspC, essential for Listeria monocytogenes virulence: genetic and proteomic analysis. Microbiology 154(7):1900–1913
Wiedmann M, Bruce JL, Keating C, Johnson AE, McDonough PL, Batt CA (1997) Ribotypes and virulence gene polymorphism suggest three distinct Listeria monocytogenes lineages with differences in their pathogenic potential. Infect Immun 65(7):2707–2716
Wu JA, Kusuma C, Mond JJ, Kokai-Kun JF (2003) Lysostaphin disrupts Staphylococcus aureus and Staphylococcus epidermis biofilms on artificial surfaces. Antimicrob Agents Chemother 47(11):3407–3414
Yala JF, Thebault P, Héquet A, Humblot V, Pradier CM, Berjeaud JM (2011) Elaboration of antibiofilm materials by chemical grafting of an antimicrobial peptide. Appl Microbiol Biotechnol 89(3):623–634
Zink R, Loessner MJ, Scherer S (1995) Characterization of cryptic prophages (monocins) in Listeria and sequence analysis of the holin/endolysin gene. Microbiology 141(10):2577–2584
Acknowledgments
Funding was provided by the Agricultural Research Service (ARS), USDA CRIS project no. 6612-3200-046-00D, and the authors thank Ms. Johnna Garrish for excellent technical support. The authors acknowledge primary amino acid sequencing and mass spectrometry analyses of the recombinant proteins by Ms. Rebekah Woolsey and Dr. Kathleen Schegg at the University of Nevada, Reno (UNR) Proteomics Center, supported by NIH Grant Number P20 RR-016464 from the INBRE Program of the National Center for Research Resources, and Dr. David M. Donovan, ARS-USDA, for helpful discussions. All the authors declare no conflict of interest.
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Simmons, M., Morales, C.A., Oakley, B.B. et al. Recombinant Expression of a Putative Amidase Cloned from the Genome of Listeria monocytogenes that Lyses the Bacterium and its Monolayer in Conjunction with a Protease. Probiotics & Antimicro. Prot. 4, 1–10 (2012). https://doi.org/10.1007/s12602-011-9084-5
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DOI: https://doi.org/10.1007/s12602-011-9084-5