Abstract
Background
Phenylketonuria (PKU) is caused by a defect in phenylalanine hydroxylase (PAH). More than 500 mutations have been reported for the gene encoding PAH. However, approximately 1%–5% of these include large deletions and large duplications that cannot be detected by conventional methods.
Methods
In this report we tried to fully characterize a PAH-deficient patient. The patient was a 2-year-old Japanese boy who was diagnosed with classical PKU at the time of neonatal screening, which was confirmed by the tetrahydrobiopterin-loading test. PCR-related direct sequencing and multiplex ligation-dependent probe amplification (MLPA) were used to analyze of the PAH of the patient.
Results
Using PCR-related direct sequencing method, we could detect only a heterozygous novel missense mutation: p.136G>C (p.G46R). A second mutation was detected by MLPA. The patient was heterozygous for a novel large deletion of exons 12 and 13: c.1200-?_1359+?del (EX12_13del). For genetic counseling, an accurate genetic diagnosis is often necessary.
Conclusions
Through a combination of MLPA and conventional methods, the success rate of PAH mutation identification can be close to 100%.
Similar content being viewed by others
References
Scriver CR, Kaufman S. Hyperphenylalaninemia: phenylalanine hydroxylase deficiency. In: Scriver CR, Beaudet AL, Sly WS, Valle D, Childs B, Vogelstein B, eds. The metabolic and molecular bases of inherited disease. 8th ed. New York: McGraw-Hill, 2001: 1667–1724.
Zschocke J. Phenylketonuria mutations in Europe. Hum Mutat 2003;21:345–356.
Schouten JP, McElgunn CJ, Waaijer R, Zwijnenburg D, Diepvens F, Pals G. Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification. Nucleic Acids Res 2002;30:e57.
Desviat LR, Pérez B, Ugarte M. Identification of exonic deletions in the PAH gene causing phenylketonuria by MLPA analysis. Clin Chim Acta 2006;373:164–167.
Birk Møller L, Nygren AO, Scott P, Hougaard P, Bieber Nielsen J, Hartmann C, et al. Low proportion of whole exon deletions causing phenylketonuria in Denmark and Germany. Hum Mutat 2007;28:207.
Bik-Multanowski M, Pietrzyk JJ. Single exon deletions in the PAH gene in Polish PKU-patients. Mol Genet Metab 2008;94:267.
Lee YW, Lee DH, Kim ND, Lee ST, Ahn JY, Choi TY, et al. Mutation analysis of PAH gene and characterization of a recurrent deletion mutation in Korean patients with phenylketonuria. Exp Mol Med 2008;40:533–540.
Trefz FK, Yoshino M, Nishiyori A, Aengeneyndt F, Schmidt-Mader B, Lichter-Konecki U, et al. RFLP-patterns in Japanese PKU families: new polymorphisms for the mutant phenylalanine hydroxylase gene. Hum Genet 1990;85:121–122.
Okano Y, Kudo S, Nishi Y, Sakaguchi T, Aso K. Molecular characterization of phenylketonuria and tetrahydrobiopterinresponsive phenylalanine hydroxylase deficiency in Japan. J Hum Genet 2011;56:306–312.
Leandro J, Saraste J, Leandro P, Flatmark T. The G46S-hPAH mutant protein: a model to study the rescue of aggregation-prone PKU mutations by chaperones. Mol Genet Metab 2011;104Suppl:S40–S44.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Maruo, Y., Suzaki, M., Matsui, K. et al. A novel large deletion (exons 12, 13) and a missense mutation (p.G46R) in the PAH in a Japanese patient with phenylketonuria. World J Pediatr 11, 181–184 (2015). https://doi.org/10.1007/s12519-015-0020-8
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12519-015-0020-8