Skip to main content
Log in

Genetic diversity of superior Persian walnut genotypes in Azadshahr, Iran

  • Research Article
  • Published:
Physiology and Molecular Biology of Plants Aims and scope Submit manuscript

Abstract

Persian walnut (Juglans regia L.) is known to have originated in central and eastern Asia. Remnants of these wild populations can still be found in the Hyrcanian forest in north-eastern Iran. In this study, 102 individual walnut trees from four geographic populations in the Azadshahr province (Vamenan, Kashidar, Rudbar and Saidabad) were sampled. We characterized individual trees using 28 standard morphological traits. The range of traits varied widely for some economically important characteristics including nut weight (6.1–19.79 g), kernel weight (2.9–9.4 g), and kernel fill percentage (26.51–60.34%). After morphological evaluation, 39 superior individuals based on nut quality and kernel fill percentage were selected for further genetic analysis. Individual superior trees were genotyped using 10 simple sequence repeat markers (SSR) and genetic diversity. Number of alleles per locus ranged from 3 (WGA005) to 12 (WGA054). Clustering analysis of 10 SSR loci divided the genotypes into three main groups. PCoA analysis clearly sorted genotypes into one of four distinctive groups which aligned with the cluster analysis. All analyses showed that individuals from Saidabad were genetically distinct. Likewise, results indicated that the high level of genetic diversity in Azadshahr region walnuts may provide a diverse source for superior walnuts in walnut breeding programs.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

References

  • Akca Y, Ozongun S (2004) Selection of late leafing, late flowering, laterally fruitful walnut (Juglans regia) types in Turkey. N Z J Crop Hortic Sci 32:337–342. https://doi.org/10.1080/01140671.2004.9514313

    Article  Google Scholar 

  • Anderberg MR (1988) Cluster analysis for applications (1973). Academic, New York

    Google Scholar 

  • Arzani K, Mansouri-Ardakan H, Vezvaei A, Roozban MR (2008) Morphological variation among Persian walnut (Juglans regia) genotypes from central Iran. N Z J Crop Hortic Sci 36:159–168. https://doi.org/10.1080/01140670809510232

    Article  Google Scholar 

  • AslAntAŞ R (2006) Identification of superior walnut (Juglans regia) genotypes in north-eastern Anatolia, Turkey. N Z J Crop Hortic Sci 34:231–237. https://doi.org/10.1080/01140671.2006.9514412

    Article  Google Scholar 

  • Atefi J (2001) Comparison of some promising Iranian walnut clones and foreign varieties. Acta Hortic. https://doi.org/10.17660/ActaHortic.2001.544.5

    Article  Google Scholar 

  • Bassam BJ, Caetano-Anollés G, Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 196:80–83

    Article  PubMed  CAS  Google Scholar 

  • Bayazit S, Kazan K, Gülbitti S, Çevik V, Ayanoğlu H, Ergül A (2007) AFLP analysis of genetic diversity in low chill requiring walnut (Juglans regia L.) genotypes from Hatay, Turkey. Sci Hortic 111:394–398. https://doi.org/10.1016/j.scienta.2006.11.006

    Article  CAS  Google Scholar 

  • Christopoulos MV, Rouskas D, Tsantili E, Bebeli PJ (2010) Germplasm diversity and genetic relationships among walnut (Juglans regia L.) cultivars and Greek local selections revealed by inter-simple sequence repeat (ISSR) markers. Sci Hortic 125:584–592. https://doi.org/10.1016/j.scienta.2010.05.006

    Article  CAS  Google Scholar 

  • Cosmulescu S, Botu M (2012) Walnut biodiversity in south-western Romania resource for perspective cultivars. Pak J Bot 44:307–311

    Google Scholar 

  • Dangl GS et al (2005) Characterization of 14 microsatellite markers for genetic analysis and cultivar identification of walnut. J Am Soc Hortic Sci 130:348–354

    CAS  Google Scholar 

  • Doğan Y, Kafkas S, Sütyemez M, Akça Y, Türemiş N (2014) Assessment and characterization of genetic relationships of walnut (Juglans regia L.) genotypes by three types of molecular markers. Sci Hortic 168:81–87. https://doi.org/10.1016/j.scienta.2014.01.024

    Article  CAS  Google Scholar 

  • Ebrahimi A, Fatahi R, Zamani Z (2011) Analysis of genetic diversity among some Persian walnut genotypes (Juglans regia L.) using morphological traits and SSRs markers. Sci Hortic 130:146–151. https://doi.org/10.1016/j.scienta.2011.06.028

    Article  CAS  Google Scholar 

  • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620

    Article  PubMed  CAS  Google Scholar 

  • Fatahi R, Ebrahimi A, Zamani Z (2010) Characterization of some Iranians and foreign walnut genotypes using morphological traits and RAPD markers. Hortic Environ Biotechnol 51:51–60

    CAS  Google Scholar 

  • International Plant Genetic Resources I (1994) Descriptors for Walnut (Juglans Spp.). International Plant Genetic Resources Institute, Nairobi

    Google Scholar 

  • Jafari Sayadi MH, Vahdati K, Mozafari J, Mohajer MRM, Leslie CA (2012) Natural Hyrcanian populations of Persian walnut (Juglans regia L.) in Iran. Acta Hort 948:97–101

    Article  Google Scholar 

  • Karimi R, Ershadi A, Ehtesham Nia A, Sharifani M, Ebrahimi A, Vahdati K (2015) Morphological and molecular evaluation of persian walnut populations in northern and western regions of Iran. J Nuts (IJNRS) 5:216

    Google Scholar 

  • Khadivi-Khub A (2014) Genetic divergence in seedling trees of Persian walnut for morphological characters in Markazi province from Iran Brazilian. J Bot 37:273–281

    Google Scholar 

  • Khadivi-Khub A, Ebrahimi A (2015) The variability in walnut (Juglans regia L.) germplasm from different regions in Iran. Acta Physiol Plant 37:1–11

    Article  CAS  Google Scholar 

  • Khadivi-Khub A, Ebrahimi A, Mohammadi A, Kari A (2015a) Characterization and selection of walnut (Juglans regia L.) genotypes from seedling origin trees. Tree Genet Genomes 11:1–10

    Article  Google Scholar 

  • Khadivi-Khub A, Ebrahimi A, Sheibani F, Esmaeili A (2015b) Phenological and pomological characterization of Persian walnut to select promising trees. Euphytica 205(2):557–567

    Article  CAS  Google Scholar 

  • Malvolti ME, Paciucci M, Cannata F, Fineschi S (1993) Genetic variation in Italian populations of Juglans regia L. Acta Hortic (Netherlands). https://doi.org/10.17660/actahortic.1993.311.12

    Article  Google Scholar 

  • McGranahan GH, Leslie CA (2012) Walnut. In: Badenes M, Byrne D (eds) Fruit breeding. Handbook of plant breeding, vol 8. Springer, Boston, pp 827–846

    Google Scholar 

  • McGranahan GH, Charles A, Leslie CA, Philips HA, Dandaker A (1998) Propagation walnut production manual. University of California, DANR Publ, Davis, pp 71–83

    Google Scholar 

  • Miller SA, Dykes DD, Polesky H (1988) A simple salting out procedure for extracting DNA from human nucleated cells. Nucl Acids Res 16:1215

    Article  PubMed  CAS  Google Scholar 

  • Nadeem MA et al (2018) DNA molecular markers in plant breeding: current status and recent advancements in genomic selection and genome editing. Biotechnol Biotechnol Equip 32:261–285. https://doi.org/10.1080/13102818.2017.1400401

    Article  Google Scholar 

  • Peakall ROD, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288–295

    Article  Google Scholar 

  • Perrier X, Jacquemoud-Collet JP (2006) DARwin software: dissimilarity analysis and representation for windows. http://darwin.cirad.fr/darwin

  • Pritchard JK, Wen X, Falush D (2003) Documentation for structure software: version 2.3. Available at https://web.stanford.edu/group/pritchardlab/software.html

  • Rao R, Woeste K (2006) Molecular characterization of Juglans regia L. cultivars with SSR markers. Acta Hortic. https://doi.org/10.17660/ActaHortic.2005.705.25

    Article  Google Scholar 

  • Ruiz-Garcia L, Lopez-Ortega G, Denia AF, Tomas DF (2011) Identification of a walnut (Juglans regia L.) germplasm collection and evaluation of their genetic variability by microsatellite markers. Span J Agric Res 9:179–192

    Article  Google Scholar 

  • Sen SM, Tekintas FE (1990) A study on the selection of Adilcevaz walnuts. Fruit Breed Genet 317:171–174

    Google Scholar 

  • Sharma SD, Sharma OC (1998) Studies on the variability in nuts of seedling walnut (Juglans regia L.) in relation to the tree age. Fruit Var J (USA) 51:20–23

    Google Scholar 

  • Sneath P, Sokal R (1973) Numerical taxonomy: the principles and practice of numerical classification. W. H. Freeman, San Francisco

    Google Scholar 

  • Vahdati K (2000) Walnut situation in Iran. Nucis Newsl 9:32–33

    Google Scholar 

  • Vahdati K, Pourtaklu SM, Karimi R, Barzehkar R, Amiri R, Mozaffari M, Woeste K (2015) Genetic diversity and gene flow of some Persian walnut populations in southeast of Iran revealed by SSR markers. Plant Syst Evol 301:691–699

    Article  Google Scholar 

  • Wang H, Pei D, Gu R-S, Wang B-Q (2008) Genetic diversity and structure of walnut populations in central and southwestern China revealed by microsatellite markers. J Am Soc Hortic Sci 133:197–203

    Google Scholar 

  • Weising K, Nybom H, Pfenninger M, Wolff K, Kahl G (2005) DNA fingerprinting in plants: principles, methods, and applications. CRC Press, Boca Raton

    Book  Google Scholar 

  • Woeste K, McGranahan GH, Bernatzky R (1996) Randomly amplified polymorphic DNA loci from a walnut backcross [(Juglans hindsii × J. regia) × J. regia]. J Am Soc Hortic Sci 121:358–361

    CAS  Google Scholar 

  • Woeste K, Burns R, Rhodes O, Michler C (2002) Thirty polymorphic nuclear microsatellite loci from black walnut. J Hered 93:58–60

    Article  PubMed  CAS  Google Scholar 

  • Yarilgac T, Koyuncu F, Koyuncu M, Kazankaya A, Sen S (1999) Some promising walnut selections (Juglans regia L.). In: IV international walnut symposium, vol 544, pp 93–96

  • Yarilgac T, Koyuncu F, Koyuncu MA, Kazankaya A, Sen SM (2001) Some promising walnut selections (Juglans regia L.). Acta Hortic. https://doi.org/10.17660/actahortic.2001.544.10

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Mehdi Rezaei.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Shamlu, F., Rezaei, M., Lawson, S. et al. Genetic diversity of superior Persian walnut genotypes in Azadshahr, Iran. Physiol Mol Biol Plants 24, 939–949 (2018). https://doi.org/10.1007/s12298-018-0573-9

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12298-018-0573-9

Keywords

Navigation