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Genetic programming for feature construction and selection in classification on high-dimensional data

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Abstract

Classification on high-dimensional data with thousands to tens of thousands of dimensions is a challenging task due to the high dimensionality and the quality of the feature set. The problem can be addressed by using feature selection to choose only informative features or feature construction to create new high-level features. Genetic programming (GP) using a tree-based representation can be used for both feature construction and implicit feature selection. This work presents a comprehensive study to investigate the use of GP for feature construction and selection on high-dimensional classification problems. Different combinations of the constructed and/or selected features are tested and compared on seven high-dimensional gene expression problems, and different classification algorithms are used to evaluate their performance. The results show that the constructed and/or selected feature sets can significantly reduce the dimensionality and maintain or even increase the classification accuracy in most cases. The cases with overfitting occurred are analysed via the distribution of features. Further analysis is also performed to show why the constructed feature can achieve promising classification performance.

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Notes

  1. http://www.gems-system.org, http://csse.szu.edu.cn/staff/zhuzx/Datasets.html.

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Authors and Affiliations

  1. Evolutionary Computation Research Group, Victoria University of Wellington, PO Box 600, Wellington, 6140, New Zealand

    Binh Tran, Bing Xue & Mengjie Zhang

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  1. Binh Tran
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  2. Bing Xue
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  3. Mengjie Zhang
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Correspondence to Binh Tran.

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Tran, B., Xue, B. & Zhang, M. Genetic programming for feature construction and selection in classification on high-dimensional data. Memetic Comp. 8, 3–15 (2016). https://doi.org/10.1007/s12293-015-0173-y

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