Journal of Microbiology

, Volume 57, Issue 10, pp 852–864 | Cite as

Structure of bacterial and eukaryote communities reflect in situ controls on community assembly in a high-alpine lake

  • Eli Michael S. GendronEmail author
  • John L. Darcy
  • Katherinia Hell
  • Steven K. Schmidt
Microbial Ecology and Environmental Microbiology


Recent work suggests that microbial community composition in high-elevation lakes is significantly influenced by microbes entering from upstream terrestrial and aquatic habitats. To test this idea, we conducted 18S and 16S rDNA surveys of microbial communities in a high-alpine lake in the Colorado Rocky Mountains. We compared the microbial community of the lake to water entering the lake and to uphill soils that drain into the lake. Utilizing hydrological and abiotic data, we identified potential factors controlling microbial diversity and community composition. Results show a diverse community entering the lake at the inlet with a strong resemblance to uphill terrestrial and aquatic communities. In contrast, the lake communities (water column and outlet) showed significantly lower diversity and were significantly different from the inlet communities. Assumptions of neutral community assembly poorly predicted community differences between the inlet and lake, whereas “variable selection” and “dispersal limitation” were predicted to dominate. Similarly, the lake communities were correlated with discharge rate, indicating that longer hydraulic residence times limit dispersal, allowing selective pressures within the lake to structure communities. Sulfate and inorganic nitrogen and phosphorus concentrations correlated with community composition, indicating “bottom up” controls on lake community assembly. Furthermore, bacterial community composition was correlated with both zooplankton density and eukaryotic community composition, indicating biotic controls such as “top-down” interactions also contribute to community assembly in the lake. Taken together, these community analyses suggest that deterministic biotic and abiotic selection within the lake coupled with dispersal limitation structures the microbial communities in Green Lake 4.


co-occurrence patterns landscape connectivity deterministic community assembly Hydrurus 


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We thank Robert Spencer, Sarah Power, Brian Straight, and Jessica Henley for field and laboratory assistance, and Diane McKnight and Pacifica Sommers for helpful discussions. Logistical support and meta-data were provided by the NSF supported Niwot Ridge Long-Term Ecological Research project and the University of Colorado Mountain Research Station. Funding was provided by the Niwot Ridge LTER program (NSF DEB-1637686) and grants to study global change effects on high-elevation microbial and plant communities (NSF DEB-1457827 and 1656978).

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Copyright information

© The Microbiological Society of Korea 2019

Authors and Affiliations

  • Eli Michael S. Gendron
    • 1
    • 2
    Email author
  • John L. Darcy
    • 3
  • Katherinia Hell
    • 4
  • Steven K. Schmidt
    • 1
  1. 1.Department of Ecology and Evolutionary BiologyUniversity of ColoradoBoulderUSA
  2. 2.Department of Molecular, Cellular, and Developmental BiologyUniversity of ColoradoBoulderUSA
  3. 3.Computational Bioscience ProgramUniversity of Colorado Anschutz Medical CampusAuroraUSA
  4. 4.Insitute of Arctic and Alpine ResearchUniversity of ColoradoBoulderUSA

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