Abstract
The study of oceanic microbial communities is crucial for our understanding of the role of microbes in terms of biomass, diversity and ecosystem function. In this study, 16S rRNA gene tag pyrosequencing was used to investigate change in bacterial community structure between summer and winter water masses from Gosung Bay in the South Sea of Korea and Chuuk in Micronesia, located in the North and South Pacific Oceans, respectively. Summer and winter sampling from each water mass revealed highly diverse bacterial communities, containing ~900 Operational Taxonomic Units (OTUs). The microbial distribution and highly heterogeneous composition observed at both sampling sites were different from those of most macroorganisms. The bacterial communities in the seawater at both sites were most abundant in Proteobacteria during the summer in Gosung and in Bacterioidetes during the winter. The proportion of Cyanobacteria was higher in summer than in winter in Chuuk and similar in Gosung. Additionally, the microbial community during summer in Gosung was significantly different from other communities observed based on the unweighted UniFrac distance. These data suggest that in both oceanic areas sampled, the bacterial communities had distinct distribution patterns with spatially- and temporally-heterogeneous distributions.
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Amaral-Zettler, L., Artigas, LF., Baross, J., Bharathi, P.A.L., Boetius, A., Chandramohan, D., Herndi, G., Kogure, K., Neal, P., Pedros-Alio, C., and et al. 2010. A global census of marine microbes. Life in the World’s Oceans: Diversity, Distribution and Abundance, pp. 223–245. In Malntyre, A. (ed.). Blackwell Publishing Ltd., Oxford.
Barz, M., Beimgraben, C., Staller, T., Germer, F., Opitz, F., Marquardt, C., Schwarz, C., Gutekunst, K., Vanselow, K.H., Schmitz, R., and et al. 2010. Distribution analysis of hydrogenases in surface waters of marine and freshwater environments. PLoS ONE 5, e13846.
Becking, L.B. 1934. Geobiologie of inleiding tot de milieukunde, WP Van Stockum & Zoon.
Brinkmeyer, R., Knittel, K., Jürgens, J., Weyland, H., Amann, R., and Helmke, E. 2003. Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl. Environ. Microbiol. 69, 6610–6619.
Casteleyn, G., Leliaert, F., Backeljau, T., Debeer, A.E., Kotaki, Y., Rhodes, L., Lundholm, N., Sabbe, K., and Vyverman, W. 2010. Limits to gene flow in a cosmopolitan marine planktonic diatom. Proc. Natl. Acad. Sci. USA 107, 12952–12957.
Chen, C.P., Tseng, C.H., Chen, C.A., and Tang, S.L. 2011. The dynamics of microbial partnerships in the coral Isopora palifera. ISME J. 5, 728–740.
Crump, B.C., Kling, G.W., and Hobbie, J.E. 2003. Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl. Envirion. Microbiol. 69, 2253–2268.
Danovaro, R., Corinaldesi, C., Dellanno, A., Fuhrman, J.A., Middelburg, J.J., Noble, R.T., and Suttle, C.A. 2011. Marine viruses and global climate change. FEMS Microbiol. Rev. 35, 993–1034.
Emami, K., Askari, A., Ullrich, M., Mohinudeen, K., Anil, A.C., Khandeparker, L., Burgess, J.G., and Mesbahi, E. 2012. Characterization of bacteria in ballast water using MALDI-TOF mass spectrometry. PLoS ONE 7, e38515.
Finlay, B.J. 2002. Global dispersal of free-living microbial eukaryote species. Science 296, 1061–1063.
Fuhrman, J.A., Steele, J.A., Hewson, I., Schwalbach, M.S., Brown, M.V., Green, J.L., and Brown, J.H. 2008. A latitudinal diversity gradient in planktonic marine bacteria. Proc. Natl. Acad. Sci. USA 105, 7774–7778.
Ghiglione, J.F. and Murray, A.E. 2012. Pronounced summer to winter differences and higher wintertime richness in coastal Antarctic marine bacterioplankton. Environ. Microbiol. 14, 617–629.
Giovannoni, S.J. and Vergin, K.L. 2012. Seasonality in ocean microbial communities. Science 335, 671–676.
Hamady, M., Lozupone, C., and Knight, R. 2010. Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and Phylo-Chip data. ISME J. 4, 17–27.
Harley, C.D., Randall Hughes, A., Hultgren, K.M., Miner, B.G., Sorte, C.J., Thornber, C.S., Rodriguez, L.F., Tomanek, L., and Williams, S.L. 2006. The impacts of climate change in coastal marine systems. Ecol. Lett. 9, 228–241.
Harvell, C.K., Kim, K., Burkholder, J.M., Colwell, R.R., Epstein, P.R., Grimes, D.J., Hofmann, E.E., Lipp, E.K., Osterhaus, A.D.M.E., Overstreet, R.M., and et al. 1999. Emerging marine diseases-climate links and anthropogenic factors. Science 285, 1505–1510.
Huber, T., Faulkner, G., and Hugenholtz, P. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20, 2317–2319.
Hur, M., Kim, Y., Song, H.R., Kim, J.M., Choi, Y.I., and Yi, H. 2011. Effect of genetically modified poplars on soil microbial communities during the phytoremediation of waste mine tailings. Appl. Environ. Microbiol. 77, 7611–7619.
Johnson, C.N., Flowers, A.R., Noriea III, N.F., Zimmerman, A.M., Bowers, J.C., DePaola, A., and Grimes, D.J. 2010. Relationships between environmental factors and pathogenic Vibrios in the Northern Gulf of Mexico. Appl. Environ. Microbiol. 76, 7076–7084.
Johnson, Z.I., Zinser, E.R., Coe, A., McNulty, N.P., Woodward, E.M., and Chisholm, S.W. 2006. Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science 311, 1737–1740.
Kim, O.S., Cho, Y.J., Lee, K., Yoon, S.H., Kim, M., Na, H., Park, S.C., Jeon, Y.S., Lee, J.H., Yi, H., Won, S., and Chun, J. 2012a. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62, 716–721.
Kim, B.S., Kim, J.N., Yoon, S.H., Chun, J., and Cerniglia, C.E. 2012b. Impact of enrofloxacin on the human intestinal microbiota revealed by comparative molecular analysis. Anaerobe 18, 310–320.
Ladau, J., Sharpton, T.J., Finucane, M.M., Jospin, G., Kembel, S.W., O’Dwyer, J., Koeppel, A.F., Green, J.L., and Pollard, K.S. 2013. Global marine bacterial diversity peaks at high latitudes in winter. ISME J 7, 1669–1677.
Lee, O.O., Yang, J., Bougouffa, S., Wang, Y., Batang, Z., Tian, R., Al-Suwailem, A., and Qian, P.Y. 2012. Spatial and species variations in bacterial communities associated with corals from the Red Sea as revealed by pyrosequencing. Appl. Environ. Microbiol. 78, 7173–7184.
Li, Z.Y., He, L.M., Wu, J., and Jiang, Q. 2006. Bacterial community diversity associated with four marine sponges from the South China Sea based on 16S rDNA-DGGE fingerprinting. J. Exp. Mar. Bio. Eco. 329, 75–85.
Lindström, E.S. 2001. Investigating influential factors on bacterioplankton community composition: results from a field study of five mesotrophic lakes. Microb. Ecol. 42, 598–605.
Martiny, J.B., Bohannan, B.J., Brown, J.H., Colwell, R.K., Fuhrman, J.A., Green, J.L., Homer-Devine, M.C., Kane, M., Krumins, J.A., Kuske, C.R., and et al. 2006. Microbial biogeography: putting microorganisms on the map. Nat. Rev. Microbiol. 4, 102–112.
McKew, B.A., Dumbrell, A.J., Daud, S.D., Hepburn, L., Thorpe, E., Mogensen, L., and Whitby, C. 2012. Characterization of geographically distinct bacterial communities associated with coral mucus produced by Acropora spp. and Porites spp. Appl. Environ. Microbiol. 78, 5229–5237.
Morens, D.M. and Fauci, A.S. 2013. Emerging infectious diseases: threats to human health and global stability. PLoS Pathog 9, e1003467.
Morrow, K.M., Moss, A.G., Chadwick, N.E., and Liles, M.R. 2012. Bacterial associates of two Caribbean coral species reveal speciesspecific distribution and geographic variability. Appl. Environ. Microbiol. 78, 6438–6449.
Motes, M.L., DePaola, A., Cook, D.W., Veazey, J.E., Hunsucker, J.C., Garthright, W.E., Boldgett, R.J., and Chirtel, S.J. 1998. Influence of water temperature and salinity on Vibrio vulnificus in Northern Gulf and Atlantic Coast Oysters (Crassostrea virginica). Appl. Environ. Microbiol. 64, 1459–1465.
Pommier, T., Canbäck, B., Riemann, L., Bostrom, K.H., Lundberg, P., Tunlid, A., and Hagstrom, A. 2007. Global patterns of diversity and community structure in marine bacterioplankton. Mol. Ecol. 16, 867–880.
Sul, W.J., Oliver, T.A., Ducklow, H.W., Amaral-Zettler, L.A., and Sogin, M.L. 2013. Marine bacteria exhibit a bipolar distribution. Proc. Natl. Acad. Sci. USA 110, 2342–2347.
Sunagawa, S., Woodley, C.M., and Medina, M. 2010. Threatened corals provide underexplored microbial habitats. PLoS ONE 5, e9554.
Woolhouse, M.E. 2002. Population biology of emerging and reemerging pathogens. Trends Microbiol. 10, s3–s7.
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Suh, SS., Park, M., Hwang, J. et al. Distinct patterns of marine bacterial communities in the South and North Pacific Oceans. J Microbiol. 52, 834–841 (2014). https://doi.org/10.1007/s12275-014-4287-6
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DOI: https://doi.org/10.1007/s12275-014-4287-6