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Niabella terrae sp. nov. isolated from greenhouse soil

  • Microbial Systematics and Evolutionary Microbiology
  • Published:
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Abstract

An orange-colored bacterial strain, ICM 1–15T, was isolated from greenhouse soil. The 16S rRNA gene sequence of this strain showed the highest sequence similarity with Niabella ginsengisoli GR10-1T (95.2%) and Niabella yanshanensis CCBAU 05354T (95.0%) among the type strains. The strain ICM 1–15T was a strictly aerobic, Gram-negative, non-spore-forming, non-motile, flexirubin pigment-producing, short rod-shaped bacterium. The strain grew at 15–35°C (optimum, 25°C), at a pH of 5.0–8.5 (optimum, pH 6.5), and in the presence of 0–3% NaCl (optimum, 1%). The DNA G+C content of strain ICM 1–15T was 43.6 mol%. It contained MK-7 as the major isoprenoid quinone and iso-C15:0 (38.9%), iso-C15:1 G (20.3%), and iso-C17:0 3-OH (12.9%) as the major fatty acids. On the basis of evidence from our polyphasic taxonomic study, we concluded that strain ICM 1–15T should be classified within a novel species of the genus Niabella, for which the name Niabella terrae sp. nov. is proposed. The type strain is ICM 1–15T (=KACC 17443T =JCM 19502T).

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References

  • Dai, J., Jiang, F., Wang, Y., Yu, B., Qi, H., Fang, C., and Zheng, C. 2011. Niabella tibetensis sp. nov., isolated from soil, and emended description of the genus Niabella. Int. J. Syst. Evol. Microbiol. 61, 1201–1205.

    Article  CAS  PubMed  Google Scholar 

  • Glaeser, S.P., Galatis, H., Martin, K., and Kämpfer, P. 2013. Niabella hirudinis and Niabella drilacis sp. nov., isolated from the medicinal leech Hirudo verbana. Int. J. Syst. Evol. Microbiol. 63, 3487–3493.

    Article  CAS  PubMed  Google Scholar 

  • Gomori, G. 1955. Preparation of buffers for use in enzyme studies. Methods Enzymol. 1, 138–146.

    CAS  Google Scholar 

  • Gonzalez, J.M. and Saiz-Jimenez, C. 2002. A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ. Microbiol. 4, 770–773.

    Article  CAS  PubMed  Google Scholar 

  • Groth, I., Schumann, P., Weiss, N., Martin, K., and Rainey, F.A. 1996. Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int. J. Syst. Bacteriol. 46, 234–239.

    Article  CAS  PubMed  Google Scholar 

  • Kim, B.Y., Weon, H.Y., Yoo, S.H., Hong, S.B., Kwon, S.W., Stackebrandt, E., and Go, S.J. 2007. Niabella aurantiaca gen. nov., sp. nov., isolated from a greenhouse soil in Korea. Int. J. Syst. Evol. Microbiol. 57, 538–541.

    Article  CAS  PubMed  Google Scholar 

  • Kim, O.S., Cho, Y.J., Lee, K., Yoon, S.H., Kim, M., Na, H., Park, S.C., Jeon, Y.S., Lee, J.H., Yi, H., and et al. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62, 716–721.

    Article  CAS  PubMed  Google Scholar 

  • Kwon, S.W., Kim, J.S., Park, I.C., Yoon, S.H., Park, D.H., Lim, C.K., and Go, S.J. 2003. Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea. Int. J. Syst. Evol. Microbiol. 53, 21–27.

    Article  CAS  PubMed  Google Scholar 

  • Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S., Jobb, G., and et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32, 1363–1371.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Pruesse, E., Peplies, J., and Glöckner, F.O. 2012. SINA: accurate high throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28, 1823–1829.

    Article  CAS  PubMed  Google Scholar 

  • Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W., Peplies, J., and Glöckner, F.O. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35, 7188–7196.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Reichenbach, H. 1992. The order Cytophagales, pp. 3631–3675. In Balows, A., Trüper, H.G., Dworkin, M., Harder, W., and Schleifer, K.H. (eds.), The Prokaryotes, Springer, New York, USA.

  • Smibert, R.M. and Krieg, N.R. 1994. Phenotypic characterization, pp. 607–654. In Gerhardt, P., Murray, R.G.E., Wood, W.A., and Krieg, N.R. (eds.), Methods for general and molecular bacteriology, American Society for Microbiology, Washington, D.C., USA.

    Google Scholar 

  • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731–2739.

    Article  CAS  PubMed  Google Scholar 

  • Wang, H., Zhang, Y.Z., Man, C.X., Chen, W.F., Sui, X.H., Li, Y., Zhang, X.X., and Chen, W.X. 2009. Niabella yanshanensis sp. nov., isolated from the soybean rhizosphere. Int. J. Syst. Evol. Microbiol. 59, 2854–2856.

    Article  CAS  PubMed  Google Scholar 

  • Weon, H.Y., Kim, B.Y., Joa, J.H., Kwon, S.W., Kim, W.G., and Koo, B.S. 2008. Niabella soli sp. nov., isolated from soil from Jeju Island, Korea. Int. J. Syst. Evol. Microbiol. 58, 467–469.

    Article  CAS  PubMed  Google Scholar 

  • Weon, H.Y., Yoo, S.H., Kim, B.Y., Son, J.A., Kim, Y.J., and Kwon, S.W. 2009. Niabella ginsengisoli sp. nov., isolated from soil cultivated with Korean ginseng. Int. J. Syst. Evol. Microbiol. 59, 1282–1285.

    Article  CAS  PubMed  Google Scholar 

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Correspondence to Hang-Yeon Weon.

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Supplemental material for this article may be found at http://www.springerlink.com/content/120956.

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Ahn, JH., Jo, EH., Kim, BY. et al. Niabella terrae sp. nov. isolated from greenhouse soil. J Microbiol. 51, 731–735 (2013). https://doi.org/10.1007/s12275-013-3507-9

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  • DOI: https://doi.org/10.1007/s12275-013-3507-9

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