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Iso-superoxide dismutase in Deinococcus grandis, a UV resistant bacterium

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Abstract

Deinococcus grandis possesses two types of superoxide dismutase (SOD, E. C. 1.15.1.1.) that show distinct electrophoretic behavior, one that migrates slowly and the other that migrates rapidly (SOD-1 and SOD-2, respectively). In this study, SOD-1 was uniformly and abundantly detected, regardless of growth phase, whereas SOD-2 was not detected during early growth, but was detectable from the exponential growth phase. In addition, a substantial increase in SOD-2 was observed in cells that were treated with potassium superoxide or UV, which suggests that SOD-2 is an inducible protein produced in response to stressful environments. Insensitivity of SOD-1 to both H2O2 and cyanide treatment suggests that SOD-1 is MnSOD. However, SOD-2 would be FeSOD, since it lost activity in response to H2O2 treatment, but not to cyanide. Localization studies of D. grandis iso-SODs in sucrose-shocked cells suggest that SOD-1 is a membrane-associated enzyme, whereas SOD-2 is a cytosolic enzyme. In conclusion, SOD-1 seems to be an essential constitutive enzyme for viability and SOD-2 appears to be an inducible enzyme that is probably critical for survival upon UV irradiation and oxidative stress.

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References

  • Agostini, H.J., J.D. Carroll, and K.W. Minton. 1996. Identification and characterization of uvrA, a DNA repair gene of Deinococcus radiodurans. J. Bacteriol. 178, 6759–6765.

    CAS  PubMed  Google Scholar 

  • Battista, J.R., A.M. Earl, and M.J. Park. 1999. Why is Deinococcus radiodurans so resistant to ionizing radiation? Trends Microbiol. 7, 362–365.

    Article  CAS  PubMed  Google Scholar 

  • Battista, J.R. and F.A. Rainey. 2001. Family Deinococcaceae, p. 395–403. In D.R. Boone and R.W. Castenholz (eds.), Bergey’s Manual of Systematic Bacteriology, vol. 1. Springer-Verlag, New York, USA.

    Google Scholar 

  • Bauche, C. and J. Laval. 1999. Repair of oxidized bases in the extremely radiation-resistant bacterium Deinococcus radiodurans. J. Bacteriol. 181, 262–269.

    CAS  PubMed  Google Scholar 

  • Beauchamp, C. and I. Fridovich. 1971. Superoxide dismutase: improved assays and an assay applicable to acrylamide gel. Anal. Biochem. 44, 276–287.

    Article  CAS  PubMed  Google Scholar 

  • Benov, L.T. and I. Fridovich. 1994. Escherichia coli expresses a copper- and zinc-containing superoxide dismutase. J. Biol. Chem. 269, 25310–25314.

    CAS  PubMed  Google Scholar 

  • Brooks, B.W. and R.G.E. Murray. 1981. Nomenclature for “Micrococcus radiodurans” and other radiation resistant cocci: Deinococccaceae fam. nov., and Deinococcus. gen., nov., including five species. Int. J. Syst. Bacteriol. 31, 353–360.

    Article  Google Scholar 

  • Carroll, J.D., M.J. Daly, and K.W. Minton. 1996. Expression of recA in Deinococcus radiodurans. J. Bacteriol. 178, 130–135.

    CAS  PubMed  Google Scholar 

  • Chou, F.I. and S.T. Tan. 1990. Manganese (II) induces cell division and increases in superoxide dismutase and catalase activities in an aging Deinococcal culture. J. Bacteriol. 172, 2029–2035.

    CAS  PubMed  Google Scholar 

  • De Groot, A., V. Chapon, P. Servan, R. Christen, S. Fischer-LeSaux Sommer, and T. Heulin. 2005. Deinococcus deserti sp. nov., a gamma-radiation-tolerant bacterium isolated from the Sahara desert. Int. J. Syst. Evol. Microbiol. 55, 2441–2446.

    Article  PubMed  CAS  Google Scholar 

  • Dufernez, F., C. Yernaux, D. Gerbod, C. Moël, M. Chauvenet, R. Wintjens, V.P. Edgcomb, M. Capron, F.R. Opperdoes, and E. Viscogliosi. 2006. The presence of four iron-containing superoxide dismutase isoenzymes in Trypanosomatodae: Characterization, subcellular localization, and phylogenic origin in Trypanosoma brucei. Free Radical Biol. Med. 40, 210–225.

    Article  CAS  Google Scholar 

  • Evans, D.M. and B.E. Moseley. 1983. Roles of the uvsC, uvsD, uvsE and mtcA genes in the two pyrimidine dimer excision repair pathways of Deinococcus radiodurans. J. Bacteriol. 156, 576–583.

    CAS  PubMed  Google Scholar 

  • Ferreira, A.C., M.F. Nobre, F.A. Rainey, M.T. Silva, R. Wait, J. Burghardt, A.P. Chung, and M.S. da Costa. 1997. Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs. Int. J. Syst. Bacteriol. 47, 939–947.

    Article  CAS  PubMed  Google Scholar 

  • Fridovich, I. 1995. Superoxide and superoxide dismutase. Ann. Rev. Biochem. 64, 97–112.

    Article  CAS  PubMed  Google Scholar 

  • Gersten, D.M. 1996. Gel elctrophoresis: Proteins, Wiley & Sons, West Sussex, UK.

    Google Scholar 

  • Halliwell, B. and J.M.C. Gutteridge. 1999. Free Radicals in Biology and Medicine, 3rd ed., p. 105–350, Oxford Univ. Press, Oxford, UK.

    Google Scholar 

  • Hirsch, P., P.C.A. Gallikowski, J. Siebert, K. Peissl, R. Kroppenstedt, P. Schumann, E. Stackebrant, and R. Anderson. 2004. Deinococcus frigens sp. Nov., Deinococcus saxicola sp. nov., and Deinococcus marmoris sp. nov., low temperature and draught tolerating, UV-resistant bacteria from continental Antarctica. Syst. Appl. Microbiol. 27, 636–645.

    Article  CAS  PubMed  Google Scholar 

  • Inaoka, T., Y. Matsumura, and T. Tsuchido. 1998. Molecular cloning and nucleotide sequence of the superoxide dismutase gene and characterization of its product from Bacillus subtilis. J. Bacteriol. 180, 3697–3703.

    CAS  PubMed  Google Scholar 

  • Kobayashi, I., T. Tamura, H. Sghaier, I. Narumi, S. Yamaguchi, K. Umeda, and K. Inagaki. 2006. Characterization of monofunctional catalase KatA from radioresistant bacterium Deinococcus radiodurans. J. Biosci. Bioeng. 101, 315–321.

    Article  CAS  PubMed  Google Scholar 

  • Kroll, J.S., P.R. Langford, and B.M. Loynds. 1991. Copper-Zinc superoxide dismutase of Haemophilus influenzae and H. parainfluenzae. J. Bacteriol. 173, 7449–7457.

    CAS  PubMed  Google Scholar 

  • Li, T., X. Huang, R. Zhou, Y. Liu, B. Li, C. Nomura, and I. Zhao. 2002. Differential expression and localization of Mn and Fe superoxide dismutase in the heterocystous Cyanobacterium Anabaena sp. strain PCC 7120. J. Bacteriol. 184, 5096–5103.

    Article  CAS  PubMed  Google Scholar 

  • Lowry, O.H., N.J. Rosebrough, A.C. Farr, and R.J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193, 265–275.

    CAS  PubMed  Google Scholar 

  • Marklund, S. and G. Marklund. 1974. Assay of SOD by pyrogallol autooxidation. Eur. J. Biochem. 47, 469–474.

    Article  CAS  PubMed  Google Scholar 

  • Minton, K.W. 1996. Repair of ionizing radiation damage in the radiation resistant bacterium Deinococcus radiodurans. Mutant Res. 363, 1–7.

    Google Scholar 

  • Narumi, I., K. Satoh, S. Cui, T. Funayama, S. Kitayama, and H. Watanabe. 2004. PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation. Mol. Microbiol. 54, 278–285.

    Article  CAS  PubMed  Google Scholar 

  • Oh, K.A. and Y.N. Lee. 1998. Purification and characterization of catalase-2 of Deinococcus radiophilus ATCC 27603. J. Biochem. Mol. Biol. 31, 114–148.

    Google Scholar 

  • Oyaizu, H., E. Stackebrandt, K.H. Schleifer, W. Ludwig, H. Pohla, H. Ito, A. Hirata, Y. Oyaizu, and K. Komagata. 1987. A radiation-resistant rod-shaped bacterium, Deinococcus grandis gen. nov., sp. nov., with peptidoglycan containing ornithine. Int. J. Syst. Bacteriol. 37, 62–67.

    Article  CAS  Google Scholar 

  • Park, Y.B. and Y.H. Han. 1997. Increased activities of SOD and catalase on aerobic growth in Arcobacter nitrofigilis. J. Microbiol. 35, 239–240.

    CAS  Google Scholar 

  • Rainey, F.A., M. Ferreira, M.F. Nobre, K. Ray, D. Bagaley, A.M. Earl, J.B. Battista, B. Gómez-Silva, C.P. McKay, and M.S. da Costa. 2007. Deinococcus peraridilitoris sp. nov., isolated from a costal desert. Int. J. Syst. Evol. Microbiol. 57, 1408–1412.

    Article  PubMed  Google Scholar 

  • Rainey, F.A., F.M. Nobre, P. Schumann, E. Stackebandt, and D.S. da Costa. 1997. Phylogentic diversity of the Deinococcal as determined by 16S ribosomal DNA sequence comparison. Int. J. Syst. Bacteriol. 47, 510–514.

    Article  CAS  PubMed  Google Scholar 

  • Rainey, F.A., K. Ray, M. Ferreira, B.Z. Gatz, M.F. Nobre, D. Bagaley, B.A. Rash, M.J. Park, A.M. Earl, N.C. Shank, A.M. Small, M.C. Henk, J.R. Battista, P. Kämper, and M.S. da Costa. 2005. Extensive diversity of ionizing radiation resistant bacteria recovered and description of nine new species of the Genus Deinococcus obtained from a single soil sample. Appl. Environ. Microbiol. 71, 5225–5235.

    Article  CAS  PubMed  Google Scholar 

  • Sadosky, A.B., J.W. Wilson, H.M. Steinman, and H.A. Shuman. 1994. The iron superoxide dismutase of Legionella pneumophila is essential for viability. J. Bacteriol. 176, 3790–3799.

    CAS  PubMed  Google Scholar 

  • Schnell, S. and H.M. Steinman. 1995. Function and stationary- phase induction of periplasmic copper-zinc superoxide dismutase and catalase/peroxidase in Caulobacter crescentus. J. Bacteriol. 177, 5924–6929.

    CAS  PubMed  Google Scholar 

  • Seo, H.J. and Y.N. Lee. 2006. Occurrence of thioredoxin reductase in Deinococcus spp., the UV resistant bacteria. J. Microbiol. 44, 461–465.

    CAS  PubMed  Google Scholar 

  • Sung, J.Y. and Y.N. Lee. 2007. Isoforms of glucose-6-phosphate dehydrogenase in Deinococcus radiophilus. J. Microbiol. 45, 318–325.

    CAS  PubMed  Google Scholar 

  • Suresh, K., G.S.N. Reddy, S. Sengupta, and S. Shivaji. 2004. Deinococcus indicus sp. nov., an arsenic resistant bacterium from an aquifer in West Bengal, India. Int. J. Syst. Evol. Microbiol. 56, 457–461.

    Article  CAS  Google Scholar 

  • St. John, G. and H.M. Steinman. 1996. Periplamsmic copper-zinc superoxide dismutase of Legionella pneumophila: role in stationary- phase survival. J. Bacteriol. 178, 1578–1584.

    CAS  PubMed  Google Scholar 

  • Walkup, L.K.B. and T. Kogoma. 1989. Escherichia coli protein inducible by oxidative stress mediated by the superoxide radical. J. Bacteriol. 171, 1476–1484.

    CAS  PubMed  Google Scholar 

  • Wang, P. and H.E. Schellhorn. 1995. Induction of resistance to hydrogen peroxide and radiation in Deinococcus radiodurans. Can. J. Microbiol. 41, 170–176.

    Article  CAS  PubMed  Google Scholar 

  • Youn, H.D., E.J. Kim, Y.C. Hah, and S.O. Kang. 1996. A novel nickel-containing superoxide dismutase from Streptomyces spp. Biochem. J. 318, 889–896.

    CAS  PubMed  Google Scholar 

  • Yun, E.J. and Y.N. Lee. 2000. Production of two different catalase-peroxidases by Deinococcus radiophilus. FEMS Microbiol. Lett. 184, 155–159.

    Article  CAS  PubMed  Google Scholar 

  • Yun, Y.S. and Y.N. Lee. 2001. Superoxide dismutase profiles in the mesophilic Deinococcus species. J. Microbiol. 39, 232–235.

    CAS  Google Scholar 

  • Yun, Y.S. and Y.N. Lee. 2004. Purification and some properties of superoxide dismutase from Deinococcus radiophilus, the UV resistant bacterium. Extremophiles 8, 237–242.

    Article  CAS  PubMed  Google Scholar 

  • Zhang, Y.Q., C.H. Sun, W.J. Li, L.Y. Yu, J.Q. Zhou, Y.Q. Zhang, L.H. Xu, and C.L. Jiang. 2007. Deinococcus yunweiensis sp. nov., a gamma- and UV-radiation-resistant bacterium from China. Int. J. Syst. Evol. Microbiol. 57, 370–375.

    Article  CAS  PubMed  Google Scholar 

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Yun, NR., Lee, Y.N. Iso-superoxide dismutase in Deinococcus grandis, a UV resistant bacterium. J Microbiol. 47, 172–177 (2009). https://doi.org/10.1007/s12275-008-0221-0

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