Adamson B, Norman TM, Jost M, Cho MY, Nunez JK, Chen Y, Villalta JE, Gilbert LA, Horlbeck MA, Hein MY, Pak RA, Gray AN, Gross CA, Dixit A, Parnas O, Regev A, Weissman JS (2016) A multiplexed single-cell CRISPR screening platform enables systematic dissection of the unfolded protein response. Cell 167(1867–1882):e21
Google Scholar
Bibikova M, Beumer K, Trautman JK, Carroll D (2003) Enhancing gene targeting with designed zinc finger nucleases. Science 300:764
Article
PubMed
CAS
Google Scholar
Boehm JS, Hahn WC (2011) Towards systematic functional characterization of cancer genomes. Nat Rev Genet 12:487–498
Article
PubMed
CAS
Google Scholar
Canver MC, Smith EC, Sher F, Pinello L, Sanjana NE, Shalem O, Chen DD, Schupp PG, Vinjamur DS, Garcia SP, Luc S, Kurita R, Nakamura Y, Fujiwara Y, Maeda T, Yuan GC, Zhang F, Orkin SH, Bauer DE (2015) BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis. Nature 527:192–197
Article
PubMed
PubMed Central
CAS
Google Scholar
Carpenter AE, Sabatini DM (2004) Systematic genome-wide screens of gene function. Nat Rev Genet 5:11–22
Article
PubMed
CAS
Google Scholar
Chavez A, Scheiman J, Vora S, Pruitt BW, Tuttle M, Iyer EP, Lin S, Kiani S, Guzman CD, Wiegand DJ, Ter-Ovanesyan D, Braff JL, Davidsohn N, Housden BE, Perrimon N, Weiss R, Aach J, Collins JJ, Church GM (2015) Highly efficient Cas9-mediated transcriptional programming. Nat Methods 12:326–328
Article
PubMed
PubMed Central
CAS
Google Scholar
Cho SW, Kim S, Kim JM, Kim JS (2013) Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat Biotechnol 31:230–232
Article
PubMed
CAS
Google Scholar
Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, Zhang F (2013) Multiplex genome engineering using CRISPR/Cas systems. Science 339:819–823
Article
PubMed
PubMed Central
CAS
Google Scholar
Consortium EP (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489:57–74
Article
CAS
Google Scholar
Dahlman JE, Abudayyeh OO, Joung J, Gootenberg JS, Zhang F, Konermann S (2015) Orthogonal gene knockout and activation with a catalytically active Cas9 nuclease. Nat Biotechnol 33:1159–1161
Article
PubMed
PubMed Central
CAS
Google Scholar
Diaz AA, Qin H, Ramalho-Santos M, Song JS (2015) HiTSelect: a comprehensive tool for high-complexity-pooled screen analysis. Nucleic Acids Res 43:e16
Article
PubMed
CAS
Google Scholar
Dixit A, Parnas O, Li B, Chen J, Fulco CP, Jerby-Arnon L, Marjanovic ND, Dionne D, Burks T, Raychowdhury R, Adamson B, Norman TM, Lander ES, Weissman JS, Friedman N, Regev A (2016) Perturb-Seq: dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens. Cell 167(1853–1866):e17
Google Scholar
Doench JG (2018) Am I ready for CRISPR? A user’s guide to genetic screens. Nat Rev Genet 19:67–80
Article
PubMed
CAS
Google Scholar
Doench JG, Fusi N, Sullender M, Hegde M, Vaimberg EW, Donovan KF, Smith I, Tothova Z, Wilen C, Orchard R, Virgin HW, Listgarten J, Root DE (2016) Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR–Cas9. Nat Biotechnol 34:184–191
Article
PubMed
PubMed Central
CAS
Google Scholar
Gaudelli NM, Komor AC, Rees HA, Packer MS, Badran AH, Bryson DI, Liu DR (2017) Programmable base editing of A*T to G*C in genomic DNA without DNA cleavage. Nature 551:464–471
Article
PubMed
PubMed Central
CAS
Google Scholar
Gilbert LA, Larson MH, Morsut L, Liu Z, Brar GA, Torres SE, Stern-Ginossar N, Brandman O, Whitehead EH, Doudna JA, Lim WA, Weissman JS, Qi LS (2013) CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell 154:442–451
Article
PubMed
PubMed Central
CAS
Google Scholar
Gilbert LA, Horlbeck MA, Adamson B, Villalta JE, Chen Y, Whitehead EH, Guimaraes C, Panning B, Ploegh HL, Bassik MC, Qi LS, Kampmann M, Weissman JS (2014) Genome-scale CRISPR-mediated control of gene repression and activation. Cell 159:647–661
Article
PubMed
PubMed Central
CAS
Google Scholar
Han K, Jeng EE, Hess GT, Morgens DW, Li A, Bassik MC (2017) Synergistic drug combinations for cancer identified in a CRISPR screen for pairwise genetic interactions. Nat Biotechnol 35:463–474
Article
PubMed
PubMed Central
CAS
Google Scholar
Hannon GJ (2002) RNA interference. Nature 418:244–251
Article
PubMed
CAS
Google Scholar
Hart T, Moffat J (2016) BAGEL: a computational framework for identifying essential genes from pooled library screens. BMC Bioinform 17:164
Article
CAS
Google Scholar
Hart T, Chandrashekhar M, Aregger M, Steinhart Z, Brown KR, Macleod G, Mis M, Zimmermann M, Fradet-Turcotte A, Sun S, Mero P, Dirks P, Sidhu S, Roth FP, Rissland OS, Durocher D, Angers S, Moffat J (2015) High-resolution CRISPR screens reveal fitness genes and genotype-specific cancer liabilities. Cell 163:1515–1526
Article
PubMed
CAS
Google Scholar
Hart T, Tong AHY, Chan K, Van Leeuwen J, Seetharaman A, Aregger M, Chandrashekhar M, Hustedt N, Seth S, Noonan A, Habsid A, Sizova O, Nedyalkova L, Climie R, Tworzyanski L, Lawson K, Sartori MA, Alibeh S, Tieu D, Masud S, Mero P, Weiss A, Brown KR, Usaj M, Billmann M, Rahman M, Constanzo M, Myers CL, Andrews BJ, Boone C, Durocher D, Moffat J (2017) Evaluation and design of genome-wide CRISPR/SpCas9 knockout screens. G3 (Bethesda) 7:2719–2727
Article
Google Scholar
Heigwer F, Zhan T, Breinig M, Winter J, Brugemann D, Leible S, Boutros M (2016) CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries. Genome Biol 17:55
Article
PubMed
PubMed Central
CAS
Google Scholar
Hess GT, Fresard L, Han K, Lee CH, Li A, Cimprich KA, Montgomery SB, Bassik MC (2016) Directed evolution using dCas9-targeted somatic hypermutation in mammalian cells. Nat Methods 13:1036–1042
Article
PubMed
PubMed Central
CAS
Google Scholar
Hilton IB, Dippolito AM, Vockley CM, Thakore PI, Crawford GE, Reddy TE, Gersbach CA (2015) Epigenome editing by a CRISPR–Cas9-based acetyltransferase activates genes from promoters and enhancers. Nat Biotechnol 33:510–517
Article
PubMed
PubMed Central
CAS
Google Scholar
Horlbeck MA, Gilbert LA, Villalta JE, Adamson B, Pak RA, Chen Y, Fields AP, Park CY, Corn JE, Kampmann M, Weissman JS (2016) Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation. Elife. https://doi.org/10.7554/eLife.19760
Article
PubMed
PubMed Central
Google Scholar
Hwang WY, Fu Y, Reyon D, Maeder ML, Tsai SQ, Sander JD, Peterson RT, Yeh JR, Joung JK (2013) Efficient genome editing in zebrafish using a CRISPR–Cas system. Nat Biotechnol 31:227–229
Article
PubMed
PubMed Central
CAS
Google Scholar
Jaitin DA, Weiner A, Yofe I, Lara-Astiaso D, Keren-Shaul H, David E, Salame TM, Tanay A, Van Oudenaarden A, Amit I (2016) Dissecting immune circuits by linking CRISPR-pooled screens with single-cell RNA-Seq. Cell 167(1883–1896):e15
Google Scholar
Jeong HH, Kim SY, Rousseaux MWC, Zoghbi HY, Liu Z (2017) CRISPRcloud: a secure cloud-based pipeline for CRISPR pooled screen deconvolution. Bioinformatics 33:2963–2965
Article
PubMed
PubMed Central
Google Scholar
Joung J, Engreitz JM, Konermann S, Abudayyeh OO, Verdine VK, Aguet F, Gootenberg JS, Sanjana NE, Wright JB, Fulco CP, Tseng YY, Yoon CH, Boehm JS, Lander ES, Zhang F (2017a) Genome-scale activation screen identifies a lncRNA locus regulating a gene neighbourhood. Nature 548:343–346
Article
PubMed
PubMed Central
CAS
Google Scholar
Joung J, Konermann S, Gootenberg JS, Abudayyeh OO, Platt RJ, Brigham MD, Sanjana NE, Zhang F (2017b) Genome-scale CRISPR–Cas9 knockout and transcriptional activation screening. Nat Protoc 12:828–863
Article
PubMed
PubMed Central
CAS
Google Scholar
Kaelin WG Jr (2012) Molecular biology. Use and abuse of RNAi to study mammalian gene function. Science 337:421–422
Article
PubMed
PubMed Central
Google Scholar
Kearns NA, Pham H, Tabak B, Genga RM, Silverstein NJ, Garber M, Maehr R (2015) Functional annotation of native enhancers with a Cas9-histone demethylase fusion. Nat Methods 12:401–403
Article
PubMed
PubMed Central
CAS
Google Scholar
Kim Y, Kweon J, Kim A, Chon JK, Yoo JY, Kim HJ, Kim S, Lee C, Jeong E, Chung E, Kim D, Lee MS, Go EM, Song HJ, Kim H, Cho N, Bang D, Kim S, Kim JS (2013a) A library of TAL effector nucleases spanning the human genome. Nat Biotechnol 31:251–258
Article
PubMed
CAS
Google Scholar
Kim Y, Kweon J, Kim JS (2013b) TALENs and ZFNs are associated with different mutation signatures. Nat Methods 10:185
Article
PubMed
Google Scholar
Kim K, Ryu SM, Kim ST, Baek G, Kim D, Lim K, Chung E, Kim S, Kim JS (2017) Highly efficient RNA-guided base editing in mouse embryos. Nat Biotechnol 35:435–437
Article
PubMed
CAS
Google Scholar
Klann TS, Black JB, Chellappan M, Safi A, Song L, Hilton IB, Crawford GE, Reddy TE, Gersbach CA (2017) CRISPR–Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome. Nat Biotechnol 35:561–568
Article
PubMed
PubMed Central
CAS
Google Scholar
Koike-Yusa H, Li Y, Tan EP, Velasco-Herrera Mdel C, Yusa K (2014) Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library. Nat Biotechnol 32:267–273
Article
PubMed
CAS
Google Scholar
Komor AC, Kim YB, Packer MS, Zuris JA, Liu DR (2016) Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage. Nature 533:420–424
Article
PubMed
PubMed Central
CAS
Google Scholar
Konermann S, Brigham MD, Trevino AE, Joung J, Abudayyeh OO, Barcena C, Hsu PD, Habib N, Gootenberg JS, Nishimasu H, Nureki O, Zhang F (2015) Genome-scale transcriptional activation by an engineered CRISPR–Cas9 complex. Nature 517:583–588
Article
PubMed
CAS
Google Scholar
Korkmaz G, Lopes R, Ugalde AP, Nevedomskaya E, Han R, Myacheva K, Zwart W, Elkon R, Agami R (2016) Functional genetic screens for enhancer elements in the human genome using CRISPR–Cas9. Nat Biotechnol 34:192–198
Article
PubMed
CAS
Google Scholar
Kweon J, Jang AH, Kim DE, Yang JW, Yoon M, Rim Shin H, Kim JS, Kim Y (2017) Fusion guide RNAs for orthogonal gene manipulation with Cas9 and Cpf1. Nat Commun 8:1723
Article
PubMed
PubMed Central
CAS
Google Scholar
Kwon DY, Zhao YT, Lamonica JM, Zhou Z (2017) Locus-specific histone deacetylation using a synthetic CRISPR–Cas9-based HDAC. Nat Commun 8:15315
Article
PubMed
PubMed Central
CAS
Google Scholar
Lei Y, Zhang X, Su J, Jeong M, Gundry MC, Huang YH, Zhou Y, Li W, Goodell MA (2017) Targeted DNA methylation in vivo using an engineered dCas9–MQ1 fusion protein. Nat Commun 8:16026
Article
PubMed
PubMed Central
CAS
Google Scholar
Li W, Xu H, Xiao T, Cong L, Love MI, Zhang F, Irizarry RA, Liu JS, Brown M, Liu XS (2014) MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens. Genome Biol 15:554
Article
PubMed
PubMed Central
CAS
Google Scholar
Li W, Koster J, Xu H, Chen CH, Xiao T, Liu JS, Brown M, Liu XS (2015) Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR. Genome Biol 16:281
Article
PubMed
PubMed Central
CAS
Google Scholar
List M, Schmidt S, Christiansen H, Rehmsmeier M, Tan Q, Mollenhauer J, Baumbach J (2016) Comprehensive analysis of high-throughput screens with HiTSeekR. Nucleic Acids Res 44:6639–6648
Article
PubMed
PubMed Central
CAS
Google Scholar
Liu XS, Wu H, Ji X, Stelzer Y, Wu X, Czauderna S, Shu J, Dadon D, Young RA, Jaenisch R (2016) Editing DNA methylation in the mammalian genome. Cell 167(233–247):e17
Google Scholar
Liu SJ, Horlbeck MA, Cho SW, Birk HS, Malatesta M, He D, Attenello FJ, Villalta JE, Cho MY, Chen Y, Mandegar MA, Olvera MP, Gilbert LA, Conklin BR, Chang HY, Weissman JS, Lim DA (2017) CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. Science 355:7111
Article
CAS
Google Scholar
Long L, Guo H, Yao D, Xiong K, Li Y, Liu P, Zhu Z, Liu D (2015) Regulation of transcriptionally active genes via the catalytically inactive Cas9 in C. elegans and D. rerio. Cell Res 25:638–641
Article
PubMed
PubMed Central
CAS
Google Scholar
Ma H, Dang Y, Wu Y, Jia G, Anaya E, Zhang J, Abraham S, Choi JG, Shi G, Qi L, Manjunath N, Wu H (2015) A CRISPR-based screen identifies genes essential for West-Nile-Virus-induced cell death. Cell Rep 12:673–683
Article
PubMed
PubMed Central
CAS
Google Scholar
Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T (2016a) Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. Nat Biotechnol 34:528–530
Article
PubMed
PubMed Central
CAS
Google Scholar
Ma Y, Zhang J, Yin W, Zhang Z, Song Y, Chang X (2016b) Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells. Nat Methods 13:1029–1035
Article
PubMed
CAS
Google Scholar
Maeder ML, Linder SJ, Cascio VM, Fu Y, Ho QH, Joung JK (2013) CRISPR RNA-guided activation of endogenous human genes. Nat Methods 10:977–979
Article
PubMed
PubMed Central
CAS
Google Scholar
Mali P, Yang L, Esvelt KM, Aach J, Guell M, Dicarlo JE, Norville JE, Church GM (2013) RNA-guided human genome engineering via Cas9. Science 339:823–826
Article
PubMed
PubMed Central
CAS
Google Scholar
Manguso RT, Pope HW, Zimmer MD, Brown FD, Yates KB, Miller BC, Collins NB, Bi K, Lafleur MW, Juneja VR, Weiss SA, Lo J, Fisher DE, Miao D, Van Allen E, Root DE, Sharpe AH, Doench JG, Haining WN (2017) In vivo CRISPR screening identifies Ptpn2 as a cancer immunotherapy target. Nature 547:413–418
Article
PubMed
PubMed Central
CAS
Google Scholar
Meier JA, Zhang F, Sanjana NE (2017) GUIDES: sgRNA design for loss-of-function screens. Nat Methods 14:831–832
Article
PubMed
PubMed Central
CAS
Google Scholar
Miller JC, Tan S, Qiao G, Barlow KA, Wang J, Xia DF, Meng X, Paschon DE, Leung E, Hinkley SJ, Dulay GP, Hua KL, Ankoudinova I, Cost GJ, Urnov FD, Zhang HS, Holmes MC, Zhang L, Gregory PD, Rebar EJ (2011) A TALE nuclease architecture for efficient genome editing. Nat Biotechnol 29:143–148
Article
PubMed
CAS
Google Scholar
Mohr SE, Smith JA, Shamu CE, Neumuller RA, Perrimon N (2014) RNAi screening comes of age: improved techniques and complementary approaches. Nat Rev Mol Cell Biol 15:591–600
Article
PubMed
PubMed Central
CAS
Google Scholar
Najm FJ, Strand C, Donovan KF, Hegde M, Sanson KR, Vaimberg EW, Sullender ME, Hartenian E, Kalani Z, Fusi N, Listgarten J, Younger ST, Bernstein BE, Root DE, Doench JG (2017) Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens. Nat Biotechnol 36:179
Article
PubMed
PubMed Central
CAS
Google Scholar
Pan D, Kobayashi A, Jiang P, Ferrari De Andrade L, Tay RE, Luoma A, Tsoucas D, Qiu X, Lim K, Rao P, Long HW, Yuan GC, Doench J, Brown M, Liu S, Wucherpfennig KW (2018) A major chromatin regulator determines resistance of tumor cells to T cell-mediated killing. Science. https://doi.org/10.1126/science.aao1710
PubMed Central
Article
PubMed
Google Scholar
Park DS, Yoon M, Kweon J, Jang AH, Kim Y, Choi SC (2017a) Targeted base editing via RNA-guided cytidine deaminases in Xenopus laevis embryos. Mol Cells 40:823–827
PubMed
PubMed Central
CAS
Google Scholar
Park RJ, Wang T, Koundakjian D, Hultquist JF, Lamothe-Molina P, Monel B, Schumann K, Yu H, Krupzcak KM, Garcia-Beltran W, Piechocka-Trocha A, Krogan NJ, Marson A, Sabatini DM, Lander ES, Hacohen N, Walker BD (2017b) A genome-wide CRISPR screen identifies a restricted set of HIV host dependency factors. Nat Genet 49:193–203
Article
PubMed
CAS
Google Scholar
Patel SJ, Sanjana NE, Kishton RJ, Eidizadeh A, Vodnala SK, Cam M, Gartner JJ, Jia L, Steinberg SM, Yamamoto TN, Merchant AS, Mehta GU, Chichura A, Shalem O, Tran E, Eil R, Sukumar M, Guijarro EP, Day CP, Robbins P, Feldman S, Merlino G, Zhang F, Restifo NP (2017) Identification of essential genes for cancer immunotherapy. Nature 548:537–542
Article
PubMed
PubMed Central
CAS
Google Scholar
Perez AR, Pritykin Y, Vidigal JA, Chhangawala S, Zamparo L, Leslie CS, Ventura A (2017) GuideScan software for improved single and paired CRISPR guide RNA design. Nat Biotechnol 35:347–349
Article
PubMed
PubMed Central
CAS
Google Scholar
Perez-Pinera P, Kocak DD, Vockley CM, Adler AF, Kabadi AM, Polstein LR, Thakore PI, Glass KA, Ousterout DG, Leong KW, Guilak F, Crawford GE, Reddy TE, Gersbach CA (2013) RNA-guided gene activation by CRISPR–Cas9-based transcription factors. Nat Methods 10:973–976
Article
PubMed
PubMed Central
CAS
Google Scholar
Porteus MH, Baltimore D (2003) Chimeric nucleases stimulate gene targeting in human cells. Science 300:763
Article
PubMed
Google Scholar
Qi LS, Larson MH, Gilbert LA, Doudna JA, Weissman JS, Arkin AP, Lim WA (2013) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 152:1173–1183
Article
PubMed
PubMed Central
CAS
Google Scholar
Sanjana NE, Shalem O, Zhang F (2014) Improved vectors and genome-wide libraries for CRISPR screening. Nat Methods 11:783–784
Article
PubMed
PubMed Central
CAS
Google Scholar
Sanjana NE, Wright J, Zheng K, Shalem O, Fontanillas P, Joung J, Cheng C, Regev A, Zhang F (2016) High-resolution interrogation of functional elements in the noncoding genome. Science 353:1545–1549
Article
PubMed
PubMed Central
CAS
Google Scholar
Shalem O, Sanjana NE, Hartenian E, Shi X, Scott DA, Mikkelson T, Heckl D, Ebert BL, Root DE, Doench JG, Zhang F (2014) Genome-scale CRISPR–Cas9 knockout screening in human cells. Science 343:84–87
Article
PubMed
CAS
Google Scholar
Shimatani Z, Kashojiya S, Takayama M, Terada R, Arazoe T, Ishii H, Teramura H, Yamamoto T, Komatsu H, Miura K, Ezura H, Nishida K, Ariizumi T, Kondo A (2017) Targeted base editing in rice and tomato using a CRISPR–Cas9 cytidine deaminase fusion. Nat Biotechnol 35:441–443
Article
PubMed
CAS
Google Scholar
Tanenbaum ME, Gilbert LA, Qi LS, Weissman JS, Vale RD (2014) A protein-tagging system for signal amplification in gene expression and fluorescence imaging. Cell 159:635–646
Article
PubMed
PubMed Central
CAS
Google Scholar
Trumbach D, Pfeiffer S, Poppe M, Scherb H, Doll S, Wurst W, Schick JA (2017) ENCoRE: an efficient software for CRISPR screens identifies new players in extrinsic apoptosis. BMC Genomics 18:905
Article
PubMed
PubMed Central
Google Scholar
Tzelepis K, Koike-Yusa H, De Braekeleer E, Li Y, Metzakopian E, Dovey OM, Mupo A, Grinkevich V, Li M, Mazan M, Gozdecka M, Ohnishi S, Cooper J, Patel M, Mckerrell T, Chen B, Domingues AF, Gallipoli P, Teichmann S, Ponstingl H, Mcdermott U, Saez-Rodriguez J, Huntly BJP, Iorio F, Pina C, Vassiliou GS, Yusa K (2016) A CRISPR dropout screen identifies genetic vulnerabilities and therapeutic targets in acute myeloid leukemia. Cell Rep 17:1193–1205
Article
PubMed
PubMed Central
CAS
Google Scholar
Virreira Winter S, Zychlinsky A, Bardoel BW (2016) Genome-wide CRISPR screen reveals novel host factors required for Staphylococcus aureus alpha-hemolysin-mediated toxicity. Sci Rep 6:24242
Article
PubMed
PubMed Central
CAS
Google Scholar
Vojta A, Dobrinic P, Tadic V, Bockor L, Korac P, Julg B, Klasic M, Zoldos V (2016) Repurposing the CRISPR–Cas9 system for targeted DNA methylation. Nucleic Acids Res 44:5615–5628
Article
PubMed
PubMed Central
CAS
Google Scholar
Wang KC, Chang HY (2011) Molecular mechanisms of long noncoding RNAs. Mol Cell 43:904–914
Article
PubMed
PubMed Central
CAS
Google Scholar
Wang T, Wei JJ, Sabatini DM, Lander ES (2014) Genetic screens in human cells using the CRISPR–Cas9 system. Science 343:80–84
Article
PubMed
CAS
Google Scholar
Wang T, Birsoy K, Hughes NW, Krupczak KM, Post Y, Wei JJ, Lander ES, Sabatini DM (2015) Identification and characterization of essential genes in the human genome. Science 350:1096–1101
Article
PubMed
PubMed Central
CAS
Google Scholar
Wang T, Yu H, Hughes NW, Liu B, Kendirli A, Klein K, Chen WW, Lander ES, Sabatini DM (2017) Gene essentiality profiling reveals gene networks and synthetic lethal interactions with oncogenic Ras. Cell 168(890–903):e15
Google Scholar
Winter J, Breinig M, Heigwer F, Brugemann D, Leible S, Pelz O, Zhan T, Boutros M (2016) caRpools: an R package for exploratory data analysis and documentation of pooled CRISPR/Cas9 screens. Bioinformatics 32:632–634
Article
PubMed
CAS
Google Scholar
Winter J, Schwering M, Pelz O, Rauscher B, Zhan T, Heigwer F, Boutros M (2017) CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens
Zalatan JG, Lee ME, Almeida R, Gilbert LA, Whitehead EH, La Russa M, Tsai JC, Weissman JS, Dueber JE, Qi LS, Lim WA (2015) Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds. Cell 160:339–350
Article
PubMed
CAS
Google Scholar
Zhang R, Miner JJ, Gorman MJ, Rausch K, Ramage H, White JP, Zuiani A, Zhang P, Fernandez E, Zhang Q, Dowd KA, Pierson TC, Cherry S, Diamond MS (2016) A CRISPR screen defines a signal peptide processing pathway required by flaviviruses. Nature 535:164–168
Article
PubMed
PubMed Central
CAS
Google Scholar
Zhou Y, Zhu S, Cai C, Yuan P, Li C, Huang Y, Wei W (2014) High-throughput screening of a CRISPR/Cas9 library for functional genomics in human cells. Nature 509:487–491
Article
PubMed
CAS
Google Scholar
Zhu S, Li W, Liu J, Chen CH, Liao Q, Xu P, Xu H, Xiao T, Cao Z, Peng J, Yuan P, Brown M, Liu XS, Wei W (2016) Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR–Cas9 library. Nat Biotechnol 34:1279–1286
Article
PubMed
PubMed Central
CAS
Google Scholar
Zong Y, Wang Y, Li C, Zhang R, Chen K, Ran Y, Qiu JL, Wang D, Gao C (2017) Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion. Nat Biotechnol 35:438–440
Article
PubMed
CAS
Google Scholar