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Modellierung G-Protein-gekoppelter Rezeptoren mit ROSETTA

Zusammenfassung

Die Verknüpfung funktioneller und struktureller Informationen über G-Protein-gekoppelte Rezeptoren (GPCRs) ist für das Verständnis dieser komplexen Systeme von Vorteil. Wir beschreiben hier die Modellierung von GPCRs mit der Software ROSETTA, wobei auch flexible Regionen abgebildet werden.

Abstract

Combination of functional and structural information of G-protein coupled receptors (GPCRs) aids the understanding of these complex systems. Here we describe modeling of GPCRs using the ROSETTA software suite, which also covers variable regions like loops or termini.

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Literatur

  1. Palczewski K, Kumasaka T, Hori T et al. (2000) Crystal structure of rhodopsin: a G protein-coupled receptor. Science 289:739–745

    Article  PubMed  CAS  Google Scholar 

  2. Millar RP, Newton CL (2010) The year in G protein-coupled receptor research. Mol Endocrinol 24:261–274

    Article  PubMed  CAS  Google Scholar 

  3. Rohl CA, Strauss CE, Misura KM et al. (2004) Protein structure prediction using Rosetta. Methods Enzymol 383:66–93

    Article  PubMed  CAS  Google Scholar 

  4. Berman HM, Westbrook J, Feng Z et al. (2000) The Protein Data Bank. Nucleic Acids Res 28:235–242

    Article  PubMed  CAS  Google Scholar 

  5. Yarov-Yarovoy V, Schonbrun J, Baker D (2006) Multipass membrane protein structure prediction using Rosetta. Proteins 62:1010–1025

    Article  PubMed  CAS  Google Scholar 

  6. Barth P, Schonbrun J, Baker D (2007) Toward high-resolution prediction and design of transmembrane helical protein structures. Proc Natl Acad Sci USA 104:15682–15687

    Article  PubMed  CAS  Google Scholar 

  7. Worth CL, Kleinau G, Krause G (2009) Comparative sequence and structural analyses of G-protein-coupled receptor crystal structures and implications for molecular models. PLoS One 4:e7011

    Article  PubMed  Google Scholar 

  8. Bockaert J, Marin P, Dumuis A et al. (2003) The’ magic tail’ of G protein-coupled receptors: an anchorage for functional protein networks. FEBS Lett 546:65–72

    Article  PubMed  CAS  Google Scholar 

  9. Barth P, Wallner B, Baker D (2009) Prediction of membrane protein structures with complex topologies using limited constraints. Proc Natl Acad Sci USA 106:1409–1414

    Article  PubMed  CAS  Google Scholar 

  10. Kaufmann KW, Lemmon GH, DeLuca SL et al. (2010) Practically useful: what the Rosetta protein modeling suite can do for you. Biochemistry 49:2987–2998

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Jens Meiler.

Additional information

Anette Schreiber 2005–2010 Biochemiestudium an der Universität Leipzig, Juni-August 2010 Aufenthalt bei Prof. Dr. J. Meiler an der Vanderbilt University, Nashville, TN, USA. Seit 2010 Doktorandin bei Prof. Dr. A. G. Beck-Sickinger an der Universität Leipzig.

Jens Meiler 1993–1998 Chemiestudium an der Universität Leipzig, 1998-2001 Promotion bei Prof. Dr. C. Griesinger, Universität Frankfurt a. M., 2001-2005 Postdoc bei Prof. Dr. D. Baker, University of Washington, Seattle, WA, USA. Seit 2005 Professur für Chemie, Pharmakologie, und Biomedizinische Informatik an der Vanderbilt University, Nashville, TN, USA.

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Schreiber, A., Meiler, J. Modellierung G-Protein-gekoppelter Rezeptoren mit ROSETTA. Biospektrum 17, 158–161 (2011). https://doi.org/10.1007/s12268-011-0021-7

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  • DOI: https://doi.org/10.1007/s12268-011-0021-7