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Biotechnology and Bioprocess Engineering

, Volume 24, Issue 3, pp 483–487 | Cite as

Complete Genome Sequence of Lactic Acid Bacterium Pediococcus acidilactici Strain ATCC 8042, an Autolytic Anti-bacterial Peptidoglycan Hydrolase Producer

  • Sung Won Cho
  • Jina Yang
  • Sungwoo Park
  • Beomhee Kim
  • Sang Woo SeoEmail author
Research Paper
  • 54 Downloads

Abstract

Pediococcus acidilactici is a probiotic bacterium that is industrially utilized in the food industry and antibiotics development. Here, we determine the complete nucleotide sequence of the genome of Pediococcus acidilactici ATCC 8042. The genome was sequenced by the PacBio RSII to generate a single contig consisting of circular chromosome sequence. Illumina MiniSeq sequencing platform and Sanger sequencing method were additionally utilized to correct errors resulting from the long-read sequencing platform. The sequence consists of 2,009,598 bp with a G + C content of 42.1% and contains 1,865 protein-coding sequences. Based on the sequence information, we could confirm and predict the presence of four peptidoglycan hydrolases by HyPe software. This work, therefore, provides the complete genomic information of P. acidilactici ATCC 8042 with a profitable potential of genome-scale comprehension of anti-pathogenic activity, which can be applied in nutraceutical and pharmaceutical biotechnology field.

Keywords

Pediococcus acidilactici ATCC 8042 complete genome sequence peptidoglycan hydrolase antimicrobial activity 

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Notes

Acknowledgements

This work was supported by the Bio & Medical Technology Development Program (NRF-2018M3A9H3020459) of the National Research Foundation (NRF) funded by Ministry of Science and ICT (MSIT) and the Next-Generation BioGreen 21 Program (PJ01323601) funded by Rural Development Administration and Creative-Pioneering Researchers Program through Seoul National University (SNU).

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Copyright information

© The Korean Society for Biotechnology and Bioengineering and Springer 2019

Authors and Affiliations

  • Sung Won Cho
    • 1
  • Jina Yang
    • 2
  • Sungwoo Park
    • 1
  • Beomhee Kim
    • 1
  • Sang Woo Seo
    • 1
    • 2
    Email author
  1. 1.School of Chemical and Biological EngineeringSeoul National UniversitySeoulKorea
  2. 2.Institute of Chemical ProcessSeoul National UniversitySeoulKorea

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