Skip to main content
Log in

Validation of 4 type-STR analysis for identification of 50 Korean

  • Research Paper
  • Medical Biotechnology
  • Published:
Biotechnology and Bioprocess Engineering Aims and scope Submit manuscript

Abstract

Short tandem repeat (STR) analysis provides genetic fingerprinting of individuals and is an indispensable technique for forensic human identification. Recently, this technique has been used in social areas, such as the identification of The Korean War, descendants of national merit, and missing children. STR analysis is performed by analyzing iteration number of repeating bases in the human genome, and currently FBI provides the Combined DNA Index System (CODIS) based on DNA databases. Among them, we used the autosomal short tandem repeats of loci D13S317, D16S539, D21S11, and amelogenin to validate this technique for identification. The samples were collected from unrelated 50 Korean individuals, and 4 STR loci of these samples were analyzed by ABI 3130 genetic analyzer. We demonstrated that 47 samples out of 50 were classified completely with only 4 STR markers, and perfect sex identification could be accomplished with amelogenin analysis.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Carracedo, A. (2005) Forensic DNA typing protocols. pp. 1–11. In: A. Carracedo and P. Sanchez-Diz (eds.). Methods in molecular Biology: Forensic DNA Typing Protocols. Humana Press, Totowa, NJ, USA.

    Google Scholar 

  2. Hert, D. G., C. P. Frediake, and A. E. Barron (2008) Advantages and limitations of next-generation sequencing technologies: A comparison of electrophoresis and non-electrophoresis methods. Electrophoresis 23: 4618–4626.

    Article  Google Scholar 

  3. Budowle, B. and A. van Daal (2009) Extracting evidence from forensic DNA analysis: future molecular biology directions. Bio-Techniques. 46: 339–350.

    Article  CAS  Google Scholar 

  4. Lohmueller, K. E. (2010) Graydon et al. provide no new evidence that forensic STR loci are functional. Forensic Sci. Internat.: Gen. 4: 273–274.

    Article  Google Scholar 

  5. Budowle, B., T. R. Moretti, A. L. Baumstark, D. A. Defenbaugh, and K. M. Keys (1999) Population data on the thirteen CODIS core short tandem repeat loci in African Americans, U.S. Caucasians, Hispanics, Bahamians, Jamaicans, and Trinidadians. J. Forensic Sci. 44: 1277–1286.

    CAS  Google Scholar 

  6. Ou, X., W. Chen, H. Chen, F. Zhao, J. Zheng, D. Tong, Y. Chen, A. Chen, and H. Sun (2011) Null alleles of the X and Y chromosomal amelogenin gene in a Chinese population. International J. Legal Med. 126: 513–518.

    Article  Google Scholar 

  7. Budowle, B., B. Shea, S. Niezgoda, and R. Chakraborty (2001) CODIS STR loci data from 41 sample populations. J. Forensic Sci. 3: 453–489.

    Google Scholar 

  8. Cerri, N., M. Franchi, S. Mascadri, and F. De Ferrari (2003) Allele frequency distribution of 13 STRs in an Italian and immigrant population sample. Internat. Cong. Series. 1239: 137–143.

    Article  CAS  Google Scholar 

  9. Francez, P. A. C., E. M. R. Rodrigues, G. F. Frazão, N. D. dos Reis Borges, and S. E. B. dos Santos (2011) Allelic frequencies and statistical data obtained from 12 codis STR loci in an admixed population of the Brazilian Amazon. Genet. Mol. Biol. 34: 35–39.

    Article  CAS  Google Scholar 

  10. Untoroa, E., D. S. Atmadjaa, C. -E. Pub, and F. -C. Wub (2009) Allele frequency of CODIS 13 in Indonesian population. Legal Med. 11: 203–205.

    Article  Google Scholar 

  11. Lee, M. -H., S. Y. Park, D. J. Kim, M. -J. Kim, H. -M. Ryu, and Y. -H. Cho (2010) Genetic variation of three autosomal STR loci D21S1435, D21S1411, and D21S1412 in Korean population. Mol. Biol. Rep. 37: 99–104.

    Article  CAS  Google Scholar 

  12. Hwa, H. -L, Y. -Y. Chang, J. -C. Lee, C. -Y Lin, H. -Y Yin, L. -H Tseng, Y. -N. Su, and T. -M. Ko (2012) Fifteen non-CODIS autosomal short tandem repeat loci multiplex data from nine population groups living in Taiwan. Int. J. Legal Med. 126: 671–675.

    Article  Google Scholar 

  13. Yuan, L, J. Ge, D. Lu, and X. Yang (2012) Population data of 21 non-CODIS STR loci in Han population of northern China. Int. J. Legal Med. 4: 659–664.

    Article  Google Scholar 

  14. Baba, Y. (1999) Capillary affinity gel electrophoresis: New technique for specific recognition of DNA sequence and the mutation detection on DNA. J. Biochem. Biophys. Methods 41: 91–101.

    Article  CAS  Google Scholar 

  15. NIST Standard Reference Database, FBI CODIS Core STR Loci. http://www.cstl.nist.gov/strbase/index.htm.

  16. Butler, J. M. (2006) Genetics and genomics of core short tandem repeat loci used in human identity testing. J. Forensic Sci. 51: 253–265.

    Article  CAS  Google Scholar 

  17. Cybertory web page, Criminal DNA database. http://www.cybertory.org.

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jong-In Won.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Seo, SC., Lee, JY. & Won, JI. Validation of 4 type-STR analysis for identification of 50 Korean. Biotechnol Bioproc E 18, 663–668 (2013). https://doi.org/10.1007/s12257-012-0790-y

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12257-012-0790-y

Keywords

Navigation