Virologica Sinica

, Volume 26, Issue 1, pp 47–53 | Cite as

Molecular characterization of segments S7 to S10 of a southern rice black-streaked dwarf virus isolate from maize in northern China

  • Xiao Yin
  • Fei-fei Xu
  • Fang-qiang Zheng
  • Xiang-dong Li
  • Bao-shen Liu
  • Chun-qing Zhang
Article

Abstract

Southern rice black-streaked dwarf virus (SRBSDV) is a novel Fijivirus prevalent in rice in southern and central China, and northern Vietnam. Its genome has 10 segments of double-stranded RNA named S1 to S10 according to their size. An isolate of SRBSDV, JNi4, was obtained from naturally infected maize plants from Ji’ning, Shandong province, in the 2008 maize season. Segments S7 to S10 of JNi4 share nucleotide identities of 72.6%–73.1%, 72.3%–73%, 73.9%–74.5% and 77.3%–79%, respectively, with corresponding segments of Rice black-streaked dwarf virus isolates, and identities of 99.7%, 99.1%–99.7%, 98.9%–99.5%, and 98.6%–99.2% with those of SRBSDV isolates HN and GD. JNi4 forms a separate branch with GD and HN in the phylogenetic trees constructed with genomic sequences of S7 to S10. These results confirm the proposed taxonomic status of SRBSDV as a distinct species of the genus Fijivirus and indicate that JNi4 is an isolate of SRBSDV. Shandong is so far the northernmost region where SRBSDV is found in China.

Key words

Southern rice black-streaked dwarf virus (SRBSDV) Maize rough dwarf disease (MRD) Identity Phylogenetic analysis 

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References

  1. 1.
    Anzola J V, Xu Z K, Asamizu T, et al. 1987. Segment-specific inverted repeats found adjacent to conserved terminal sequences in wound tumor virus genome and defective interfering RNAs. Proc Nat Acad Sci USA, 84: 8301–8305.CrossRefPubMedGoogle Scholar
  2. 2.
    Bao Y X, Xu X Y, Wang J Q, et al. 2007. Analysis of the atmospheric dynamical backgrounds for the great immigration events of white back planthoppper (Sogatella furcifera). Acta Ecol Sin, 27: 4527–4535.Google Scholar
  3. 3.
    Chen J, Zhu Q Q, Yuan C Y, et al. 2008. Molecular characterization of Rice black-streaked dwarf virus isolates causing maize rough dwarf disease in Shandong. Acta Phytopathol Sin, 38: 540–543.Google Scholar
  4. 4.
    Distéfano A J, Conci L R, Muñoz Hidalgo M, et al. 2002. Sequence analysis of genome segments S4 and S8 of Mal de Río Cuarto virus (MRCV): evidence that the virus should be a separate Fijivirus species. Arch Virol, 147: 1699–1709.CrossRefPubMedGoogle Scholar
  5. 5.
    Distefano A J, Hopp H E, del Vas M. 2005. Sequence analysis of genome segments S5 and S10 of Mal de Rio Cuarto virus (Fijivirus, Reoviridae). Arch Virol, 150: 1241–1248.CrossRefPubMedGoogle Scholar
  6. 6.
    Fang S, Yu J, Feng J, et al. 2001. Identification of rice black-streaked dwarf fijivirus in maize with rough dwarf disease in China. Arch Virol, 146: 167–170.CrossRefPubMedGoogle Scholar
  7. 7.
    Guzman F A, Distefano A J, Arneodo J D, et al. 2007. Sequencing of the bicistronic genome segments S7 and S9 of Mal de Rio Cuarto virus (Fijivirus, Reoviridae) completes the genome of this virus. Arch Virol, 152: 565–573.CrossRefPubMedGoogle Scholar
  8. 8.
    Harding R M, Burns P, Geijskes R J, et al. 2006. Molecular analysis of Fiji disease virus segments 2, 4 and 7 completes the genome sequence. Virus Genes, 32: 43–47.CrossRefPubMedGoogle Scholar
  9. 9.
    Isogai M, Uyeda I, Lindsten K. 1998. Taxonomic characteristics of fijiviruses based on nucleotide sequences of the oat sterile dwarf virus genome. J Gen Virol, 79: 1479–1485.PubMedGoogle Scholar
  10. 10.
    Kumar S, Nei M, Dudley J, et al. 2008. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform, 9: 299–306.CrossRefPubMedGoogle Scholar
  11. 11.
    Larkin M A, Blackshields G, Brown N P, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics, 23: 2947–2948.CrossRefPubMedGoogle Scholar
  12. 12.
    Marzachì C, Antoniazzi S, d’Aquilio M, et al. 1996. The double-stranded RNA genome of maize rough dwarf fijivirus contains both mono and dicistronic segments. Eur J Plant Pathol, 102: 601–605.CrossRefGoogle Scholar
  13. 13.
    Marzachi C, Boccardo G, Nuss D L. 1991. Cloning of the maize rough dwarf virus genome: molecular confirmation of the plant-reovirus classification scheme and identification of two large nonoverlapping coding domains within a single genomic segment. Virology, 180: 518–526.CrossRefPubMedGoogle Scholar
  14. 14.
    McQualter R B, Burns P, Smith G R, et al. 2004. Molecular analysis of Fiji disease virus genome segments 5, 6, 8 and 10. Arch Virol, 149: 713–721.CrossRefPubMedGoogle Scholar
  15. 15.
    Milne R G, del Vas M, Harding R M, et al. 2005. Genus Fijivirus. in: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxomony: Classification and nomenclature of viruses. Eighth Report of the International Committee on the Taxonomy of Viruses. Elsevier Academic Press, San Diego, pp 534–542.Google Scholar
  16. 16.
    Nakashima N, Koizumi M, Watanabe H, et al. 1996. Complete nucleotide sequence of the Nilaparvata lugens reovirus: a putative member of the genus Fijivirus. J Gen Virol, 77: 139–146.CrossRefPubMedGoogle Scholar
  17. 17.
    Nakashima N, Noda H. 1994. Nucleotide sequence of Nilaparvata lugens reovirus genome segment S8 coding for the major outer capsid protein. J Gen Virol, 75: 2803–2806.CrossRefPubMedGoogle Scholar
  18. 18.
    Noda H, Nakashima N, Omura T. 1994. Cloning of the Nilaparvata lugens reovirus genome: conserved terminal nucleotide sequences and nucleotide sequence of genome segment S10. J Gen Virol, 75: 221–225.CrossRefPubMedGoogle Scholar
  19. 19.
    Soo H M, Handley J A, Maugeri M M, et al. 1998. Molecular characterization of Fiji disease fijivirus genome segment 9. J Gen Virol, 79: 3155–61.PubMedGoogle Scholar
  20. 20.
    Tamura K, Dudley J, Nei M, et al. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol, 24: 1596–1599.CrossRefPubMedGoogle Scholar
  21. 21.
    Thompson J D, Higgins D G, Gibson T J. 1994. improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucl Acids Res, 22: 4673–4680.CrossRefPubMedGoogle Scholar
  22. 22.
    Wang Q, Yang J, Zhou G H, et al. 2010. The complete genome sequence of two isolates of southern rice black-streaked dwarf virus, a new member of the genus Fijivirus. J Phytopathol, 158: 733–737CrossRefGoogle Scholar
  23. 23.
    Wang Z H, Fang S G, Xu J L, et al. 2003. Sequence analysis of the complete genome of rice black-streaked dwarf virus isolated from maize with rough dwarf disease. Virus Genes, 27: 163–168.CrossRefPubMedGoogle Scholar
  24. 24.
    Yu X Q, Lan Y F, Wang H Y, et al. 2007. The complete genomic sequence of Tobacco vein banding mosaic virus and its similarities with other potyviruses. Virus Genes, 35: 801–806.CrossRefPubMedGoogle Scholar
  25. 25.
    Zhang H M, Chen J P, Adams M J. 2001. Molecular characterisation of segments 1 to 6 of Rice black-streaked dwarf virus from China provides the complete genome. Arch Virol, 146: 2331–2339.CrossRefPubMedGoogle Scholar
  26. 26.
    Zhang H M, Chen J P, Lei J L, et al. 2001. Sequence analysis shows that a dwarfing disease on rice, wheat and maize in China is caused by rice black-streaked dwarf virus. Eur J Plant Pathol, 107: 563–567.CrossRefGoogle Scholar
  27. 27.
    Zhang H M, Yang J, Chen J P, et al. 2008. A black-streaked dwarf disease on rice in China is caused by a novel fijivirus. Arch Virol, 153: 1893–1898.CrossRefPubMedGoogle Scholar
  28. 28.
    Zhou G H, Wen J J, Cai D J, et al. 2008. Southern rice black-streaked dwarf virus: A new proposed Fijivirus species in the family Reoviridae. Chin Sci Bull, 53: 3677–3685.CrossRefGoogle Scholar

Copyright information

© Wuhan Institute of Virology, CAS and Springer-Verlag Berlin Heidelberg 2011

Authors and Affiliations

  • Xiao Yin
    • 1
  • Fei-fei Xu
    • 1
  • Fang-qiang Zheng
    • 1
  • Xiang-dong Li
    • 1
  • Bao-shen Liu
    • 2
  • Chun-qing Zhang
    • 2
  1. 1.Shandong Key Laboratory for Agricultural Microbiology, College of Plant ProtectionShandong Agricultural UniversityTai’an, ShandongChina
  2. 2.College of AgronomyShandong Agricultural UniversityTai’an, ShandongChina

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