Skip to main content

Advertisement

Log in

The use of large databases to characterize habitat types: the case of Quercus suber woodlands in Europe

  • Vegetation Science and Habitats Directive
  • Published:
Rendiconti Lincei. Scienze Fisiche e Naturali Aims and scope Submit manuscript

Abstract

The conservation of habitat types has been recognized to be of relevant importance for the conservation of biodiversity and is a major concern in the European Union. With the 92/43/EEC Habitats Directive, the European Commission targeted these habitat types, which conservation must be ensured by Member States. In this context, the Habitat type 9330 “Quercus suber forests” is intended to ensure the conservation of cork oak woodlands in Europe. To support the enhancement of nature conservation policies, in this study we provide a classification of cork oak woodlands in Europe using a large vegetation database. We identify four major groups with clear biogeographic differences and characterize them by lists of indicator species. We also provide distribution maps based on occurrence data and the modelled potential area of distribution as an additional tool for conservation. This study offers a contribution to the comparative description of the European Q. suber woodlands subtypes and to establish a protocol for habitat monitoring and assessment.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

References

  • Agrillo E, Alessi N, Massimi M, Spada F, De Sanctis M, Francesconi F, Cambria VE, Attorre F (2017) Nationwide Vegetation-Plots Database—Sapienza University of Rome: state of the art, basic figures and future perspectives. Phytocoenologia 47(2):221–229

    Article  Google Scholar 

  • Álvarez-Martínez JM, Jiménez-Alfaro B, Barquín J, Ondiviela B, Recio M, Silió-Calzada A, Juanes JA (2017) Modelling the area of occupancy of habitat types with remote sensing. Methods Ecol Evol. https://doi.org/10.1111/2041-210X.12925

    Article  Google Scholar 

  • Barberis G, Mariotti M (1979) Notizie geobotaniche su Quercus suber Lam. Liguria. Archivio Botanico e Biogeografico Italiano 55:61–82

    Google Scholar 

  • Botta-Dukát Z, Chytrý M, Hájková P, Havlová M (2005) Vegetation of lowland wet meadows along a climatic continentality gradient in Central Europe. Preslia 77:89–111

    Google Scholar 

  • Brisse H, De Ruffray P, Grandjouan G, Hoff M (1995) The phytosociological database “SOPHY”. Part I: Calibration of indicator plants. Part II: Socio-ecological classification of relevés. Ann di Bot LIII:177–190

    Google Scholar 

  • Bruelheide H (2000) A new measure of fidelity and its application to defining species groups. J Veg Sci 11:167–178

    Article  Google Scholar 

  • Bugalho M, Plieninger T, Aronson J, Ellatifi M, Crespo DG (2009) Open woodlands: a diversity of uses (and overuses). In: Aronson J, Pereira JS, Pausas J (eds) Cork oak woodlands on the edge: ecology, biogeography, and restoration of an ancient Mediterranean ecosystem. Island Press, Washington DC, pp 33–45

    Google Scholar 

  • Carrión J, Parra I, Navarro C, Munuera M (2000) Past distribution and ecology of the cork oak (Quercus suber) in the Iberian Peninsula: a pollen-analytical approach. Divers Distrib 6:29–44

    Article  Google Scholar 

  • Chytrý M, Tichý L, Holt J, Botta-Dukát Z (2002) Determination of diagnostic species with statistical fidelity measures. J Veg Sci 13:79–90

    Article  Google Scholar 

  • Chytrý M, Hennekens SM, Jiménez-Alfaro B, Knollová I, Dengler J, Jansen F, Landucci F, Schaminée JHJ, Aćić S, Agrillo E, Ambarlı D, Angelini P, Apostolova I, Attorre F, Berg C, Bergmeier E, Biurrun I, Botta-Dukát Z, Brisse H, Campos JA, Carlón L, Čarni A, Casella L, Csiky J, Ćušterevska R, Dajić Stevanović Z, Danihelka J, De Bie E, de Ruffray P, De Sanctis M, Dickoré WB, Dimopoulos P, Dubyna D, Dziuba T, Ejrnaes R, Ermakov N, Ewald J, Fanelli G, Fernández-González F, FitzPatrick Ú, Font X, García-Mijangos I, Gavilán RG, Golub V, Guarino R, Haveman R, Indreica A, Işık Gürsoy D, Jandt U, Janssen JAM, Jiroušek M, Kącki Z, Kavgacı A, Kleikamp M, Kolomiychuk V, Krstivojević Ćuk M, Krstonošić D, Kuzemko A, Lenoir J, Lysenko T, Marcenò C, Martynenko V, Michalcová D, Moeslund JE, Onyshchenko V, Pedashenko H, Pérez-Haase A, Peterka T, Prokhorov V, Rašomavičius V, Rodríguez-Rojo MP, Rodwell JS, Rogova T, Ruprecht E, Rūsiņa S, Seidler G, Šibík J, Šilc U, Škvorc Ž, Sopotlieva D, Stančić Z, Svenning J-C, Swacha G, Tsiripidis I, Turtureanu PD, Uğurlu E, Uogintas D, Valachovič M, Vashenyak Y, Vassilev K, Venanzoni R, Virtanen R, Weekes L, Willner W, Wohlgemuth T, Yamalov S (2016) European Vegetation Archive (EVA): an integrated database of European vegetation plots. Appl Veg Sci 19:173–180

    Article  Google Scholar 

  • Davies CE, Moss D, Hill MO (2004) EUNIS habitat classification revised 2004. European Environment Agency, Copenhagen

    Google Scholar 

  • De Cáceres M, Chytrý M, Agrillo E, Attorre F, Botta-Dukát Z, Capelo J, Czúcz B, Dengler J, Ewald J, Faber-Langendoen D, Feoli E, Franklin SB, Gavilán R, Gillet F, Jansen F, Jiménez-Alfaro B, Krestov P, Landucci F, Lengyel A, Loidi J, Mucina L, Peet RK, Roberts DW, Roleček J, Schaminée JHJ, Schmidtlein S, Theurillat JP, Tichý L, Walker DA, Wildi O, Willner W, Wiser SK (2015) A comparative framework for broad-scale plot-based vegetation classification. Appl Veg Sci 18:543–560. https://doi.org/10.1111/avsc.12179

    Article  Google Scholar 

  • Dengler J, Löbel S, Dolnik C (2009) Species constancy depends on plot size—a problem for vegetation classification and how it can be solved. J Veg Sci 20:754–766

    Article  Google Scholar 

  • Dengler J, Jansen F, Glöckler F, Peet RK, De Cáceres M, Chytrý M, Ewald J, Oldeland J, Lopez-Gonzalez G, Finckh M, Mucina L, Rodwell JS, Schaminée JHJ, Spencer N (2011) The Global Index of Vegetation-Plot Databases (GIVD): a new resource for vegetation science. J Veg Sci 22:582–597

    Article  Google Scholar 

  • Devilliers P, Devilliers-Terschurenn J (1996) A classification of Palaearctic habitats (no. 18–78) Council of Europe

  • Douda J, Boublík K, Slezák M, Biurrun I, Nociar J, Havrdová A, Doudová J, Aćić S, Brisse H, Brunet J, Chytrý M, Claessens H, Csiky J, Didukh Y, Dimopoulos P, Dullinger S, Fitzpatrick Ú, Guisan A, Horchler PJ, Hrivnák R, Jandt U, Kacki Z, Kevey B, Landucci F, Lecomte H, Lenoir J, Paal J, Paternoster D, Pauli H, Pielech R, Rodwell JS, Roelandt B, Svenning JC, Šibík J, Šilc U, Škvorc Ž, Tsiripidis I, Tzonev RT, Wohlgemuth T, Zimmermann NE (2016) Vegetation classification and biogeography of European floodplain forests and alder carrs. Appl Veg Sci 19:147–163. https://doi.org/10.1111/avsc.12201

    Article  Google Scholar 

  • Dowgiallo G, Testi A, Pesoli P, Pignatti S (1997) Edaphic characteristics of Quercus suber woods in Latium. Rend Fis Acc Lincei 8:249–264

    Article  Google Scholar 

  • European Commission (2013) Interpretation Manual of European Union Habitats—EUR28. EEA website. http://ec.europa.eu/environment/nature/legislation/habitatsdirective/docs/Int_Manual_EU28.pdf. Accessed 20 Dec 2017

  • Evans D (2010) Interpreting the habitats of Annex I: past, present and future. Acta Bot Gall 157:677–686

    Article  Google Scholar 

  • Evans D, Arvela M (2011) Assessment and reporting under article 17 of the habitats directive, explanatory notes & guidelines for the period 2007–2012 European Topic Centre on Biological Diversity. CIRCABC website. https://circabc.europa.eu/sd/a/2c12cea2-f827-4bdb-bb56-3731c9fd8b40/Art17-Guidelines-final.pdf. Accessed 4 Dec 2017

  • Ewald J (2003) A critique for phytosociology. J Veg Sci 14:291–296

    Article  Google Scholar 

  • Font X, Pérez-García N, Biurrun I, Fernández-González F, Lence C (2012) The Iberian and Ma-esian Vegetation Information System (SIVIM, http://www.sivim.info), five years of online vegetation’s data publishing. Plant Sociol 49:89–95

    Google Scholar 

  • Hennekens SM, Schaminée JHJ (2001) TURBOVEG, a comprehensive data base management system for vegetation data. J Veg Sci 12:589–591

    Article  Google Scholar 

  • Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A (2005) Very high resolution interpolated climate surfaces for global land areas. Int J Climatol 25:1965–1978

    Article  Google Scholar 

  • Houston Durrant T, de Rigo D, Caudullo G (2016) Quercus suber in Europe: distribution, habitat, usage and threats. In: San-Miguel-Ayanz J, de Rigo D, Caudullo G, Houston Durrant T, Mauri A (eds) European atlas of forest tree species. Publications Office, Luxembourg, pp 164–165

    Google Scholar 

  • Jiménez-Alfaro B, Suárez-Seoane S, Chytrý M, Hennekens SM, Willner W, Hájek M, Agrillo E, Álvarez-Martínez JA, Bergamini A, Brisse H, Brunet J, Casella L, Dítě D, Font X, Gillet F, Hájková P, Jansen F, Jandt U, Kącki Z, Lenoir J, Rodwell JS, Schaminée JHJ, Sekulová L, Šibík J, Škvorc Ž, Tsiripidis I (2018) Modelling the distribution and compositional variation of plant communities at the continental scale. Divers Distrib. https://doi.org/10.1111/ddi.12736

    Article  Google Scholar 

  • Jiménez-Valverde A (2014) Threshold-dependence as a desirable attribute for discrimination assessment: implications for the evaluation of species distribution models. Biodivers Conserv 23(2):369–385

    Article  Google Scholar 

  • Jiménez-Valverde A, Lobo JM (2007) Threshold criteria for conversion of probability of species presence to either–or presence–absence. Acta oecologica 31(3):361–369

    Article  Google Scholar 

  • Keith DA, Elith J, Simpson CC (2014) Predicting distribution changes of a mire ecosystem under future climates. Divers Distrib 20:440–454

    Article  Google Scholar 

  • Lacambra JLC, Andray BA, Francés SF (2010) Influence of the soil water holding capacity on the potential distribution of forest species. A case study: the potential distribution of cork oak (Quercus suber L.) in central-western Spain. Eur J For Res 129:111–117

    Article  Google Scholar 

  • Lengyel S, Déri E, Varga Z, Horváth R, Tóthmérész B, Henry PY, Kobler A, Kutnar L, Babij V, Seliškar A, Christia C, Papastergiadou E, Gruber B, Henle K (2008) Habitat monitoring in Europe: a description of current practices. Biodivers Conserv 17:3327–3339

    Article  Google Scholar 

  • Lengyel A, Chytrý M, Tichý L (2011) Heterogeneity-constrained random resampling of phytosociological databases. J Veg Sci 22:175–183

    Article  Google Scholar 

  • Lepš J, Šmilauer P (2003) Multivariate analysis of ecological data using CANOCO. Cambridge University Press, Cambridge

    Book  Google Scholar 

  • Lötter M, Mucina L, Witkowski E (2013) The classification conundrum: species fidelity as leading criterion in search of a rigorous method to classify a complex forest data set. Community Ecol 14:121–132

    Article  Google Scholar 

  • Magri D, Fineschi S, Bellarosa R, Buonamici A, Sebastiani F, Schirone B, Simeone M, Vendramin G (2007) The distribution of Quercus suber chloroplast haplotypes matches the palaeogeographical history of the western Mediterranean. Mol Ecol 16:5259–5266

    Article  CAS  Google Scholar 

  • Magri D, Agrillo E, Di Rita F, Furlanetto G, Pini R, Ravazzi C, Spada F (2015) Holocene dynamics of tree taxa populations in Italy. Rev Palaeobot Palynol 218:267–284

    Article  Google Scholar 

  • Marcenò C, Guarino R, Loidi J, Herrera M, Isermann M, Knollová I, Tichý L, Tzonev RT, Acosta ATR, FitzPatrick Ú, Iakushenko D, Janssen JAM, Jiménez-Alfaro B, Kącki Z, Keizer-Sedláková I, Kolomiychuk V, Rodwell JS, Schaminée JHJ, Šilc U, Chytrý M (2018) Classification of European and Mediterranean coastal dune vegetation. Appl Veg Sci. https://doi.org/10.1111/avsc.12379

    Article  Google Scholar 

  • Meusel H, Jäger E, Weinert E (1965) Vergleichende Chorologie der zentraleuropäischen Flora. Gustav Fischer Verlag, Jena

    Google Scholar 

  • Michalcová D, Lvončík S, Chytrý M, Hájek O (2011) Bias in vegetation databases? A comparison of stratified-random and preferential sampling. J Veg Sci 22:281–291

    Article  Google Scholar 

  • Millington A, Blumler M, Schickhoff U (2011) The SAGE handbook of biogeography. SAGE, Los Angeles

    Google Scholar 

  • Mucina L (1997) Classification of vegetation: past, present and future. J Veg Sci 8(6):751–760

    Article  Google Scholar 

  • Mucina L, Bültmann H, Dierßen K, Theurillat JP, Raus T, Čarni A, Šumberová K, Willner W, Dengler J, García RG, Chytrý M, Hájek M, Di Pietro R, Iakushenko D, Pallas J, Daniëls FJA, Bergmeier E, Guerra AS, Ermakov N, Valachovič M, Schaminée JHJ, Lysenko T, Didukh YP, Pignatti S, Rodwell JS, Capelo J, Weber HE, Solomeshch A, Dimopoulos P, Aguiar C, Hennekens SM, Tichý L (2016) Vegetation of Europe: hierarchical floristic classification system of vascular plant, bryophyte, lichen and algal communities. J Veg Sci 19:3–264

    Article  Google Scholar 

  • Palamarev E (1989) Paleobotanical evidences of the Tertiary history and origin of the Mediterranean sclerophyll dendroflora. Plant Syst Evol 162(1–4):93–107

    Article  Google Scholar 

  • Palamarev E, Tsenov B (2004) Genus Quercus in the Late Miocene flora of Baldevo formation (Southwest Bulgaria): taxonomical composition and palaeoecology. Phytol Balc 10:147–156

    Google Scholar 

  • Pausas JG, Marañón T, Caldeira M, Pons J (2009) Natural regeneration. In: Aronson J, Pereira JS, Pausas J (eds) Cork oak woodlands on the edge: ecology, biogeography, and restoration of an ancient Mediterranean ecosystem. Island Press, Washington DC, pp 115–125

    Google Scholar 

  • Petroselli A, Vessella F, Cavagnuolo L, Piovesan G, Schirone B (2013) Ecological behavior of Quercus suber and Quercus ilex inferred by topographic wetness index (TWI). Trees Struct Funct 27:1201–1215

    Article  Google Scholar 

  • Phillips SJ, Anderson RP, Schapire RE (2006) Maximum entropy modeling of species geographic distributions. Ecol Model 190:231–259

    Article  Google Scholar 

  • Potts AJ, Hedderson TA, Franklin J, Cowling RM (2013) The Last Glacial Maximum distribution of South African subtropical thicket inferred from community distribution modelling. J Biogeogr 40:310–322

    Article  Google Scholar 

  • Rivas-Martínez S (1975) La vegetación de la clase Quercetea ilicis en España y Portugal. Anales del Instituto Botánico A J Cavanilles 31:205–259

    Google Scholar 

  • Rivas-Martínez S, Biondi E, Costa M, Mossa L (2003) Datos sobre la vegetación de la clase Quercetea ilicis en Cerdeña. Fitosociologia 40:35–38

    Google Scholar 

  • Simeone MC, Papini A, Vessella F, Bellarosa R, Spada F, Schirone B (2009) Multiple genome relationships and a complex biogeographic history in the eastern range of Quercus suber L. (Fagaceae) implied by nuclear and chloroplast DNA variation. Caryologia 62:236–252

    Article  Google Scholar 

  • Tichý L (2002) JUICE, software for vegetation classification. J Veg Sci 13:451–453

    Article  Google Scholar 

  • Tichý L, Chytrý M (2006) Statistical determination of diagnostic species for site groups of unequal size. J Veg Sci 17:809–818

    Article  Google Scholar 

  • Tutin TG, Heywood VH, Burges NA, Valentine D, Walters SM, Webb DA (2001) Flora europaea. Cambridge University Press, Cambridge

    Google Scholar 

  • Willner W, Jiménez-Alfaro B, Agrillo E, Biurrun I, Campos JA, Čarni A, Casella L, Csiky J, Ćušterevska R, Didukh YP, Ewald J, Jandt U, Jansen F, Kącki Z, Kavgacı A, Lenoir J, Marinšek A, Onyshchenko V, Rodwell JS, Schaminée JHJ, Šibík J, Škvorc Ž, Svenning JC, Tsiripidis I, Turtureanu PD, Tzonev R, Vassilev K, Venanzoni R, Wohlgemuth T, Chytrý M (2017) Classification of European beech forests: a Gordian Knot? Appl Veg Sci 20:494–512. https://doi.org/10.1111/avsc.12299

    Article  Google Scholar 

Download references

Acknowledgements

Special thank to all the co-authors for patience and their suggestions. We also thank to the two anonymous reviewers for helpful and constructive comments on a previous version of this manuscript.

Author information

Authors and Affiliations

Authors

Contributions

AE designed the research; AN, BJA and CL developed the initial aims; AN, BJA prepared the data set and did the analyses; AE, AN, BJA and CL wrote the manuscript; all the other authors contributed vegetation data, improved the aims of this research and critically revised the manuscript.

Corresponding author

Correspondence to Emiliano Agrillo.

Additional information

This peer-reviewed contribution is from the European Vegetation Survey working group established in 1992 by Alessandro Pignatti and colleagues in Rome.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 3460 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Agrillo, E., Alessi, N., Jiménez-Alfaro, B. et al. The use of large databases to characterize habitat types: the case of Quercus suber woodlands in Europe. Rend. Fis. Acc. Lincei 29, 283–293 (2018). https://doi.org/10.1007/s12210-018-0703-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12210-018-0703-x

Keywords

Navigation