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Aliphatic 1H, 13C and 15N chemical shift assignments of dihydrofolate reductase from the psychropiezophile Moritella profunda in complex with NADP+ and folate

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Abstract

Dihydrofolate reductase from the deep-sea bacterium Moritella profunda (MpDHFR) has been 13C/15N isotopically labelled and purified. Here, we report the aliphatic 1H, 13C and 15N resonance assignments of MpDHFR in complex with NADP+ and folate. The spectra of MpDHFR suggest considerably greater conformational heterogeneity than is seen in the closely related DHFR from Escherichia coli.

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Abbreviations

DHFR:

Dihydrofolate reductase

EcDHFR:

DHFR from Escherichia coli

MpDHFR:

DHFR from Moritella profunda

References

  • Bhabha G, Tuttle L, Martinez-Yamout MA, Wright PE (2011) Identification of endogenous ligands bound to bacterially expressed human and E. coli dihydrofolate reductase by 2D NMR. FEBS Lett 585(22):3528–3532

    Article  Google Scholar 

  • Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6(3):277–293

    Article  Google Scholar 

  • Evans RM, Behiry EM, Tey L-H, Guo J, Loveridge EJ, Allemann RK (2010) Catalysis by dihydrofolate reductase from the psychropiezophile Moritella profunda. ChemBioChem 11(14):2010–2017

    Article  Google Scholar 

  • Hata K, Kono R, Fujisawa M, Kitahara R, Kamatari YO, Akasaka K, Xu Y (2004) High pressure NMR study of dihydrofolate reductase from a deep-sea bacterium. Cell Mol Biol 50(4):311–316

    Google Scholar 

  • Hay S, Evans RM, Levy C, Loveridge EJ, Wang X, Leys D, Allemann RK, Scrutton NS (2009) Are the catalytic properties of enzymes from piezophilic organisms pressure adapted? ChemBioChem 10(14):2348–2353

    Article  Google Scholar 

  • Loveridge EJ, Tey L-H, Behiry EM, Dawson WM, Evans RM, Whittaker SB-M, Günther UL, Williams C, Crump MP, Allemann RK (2011) The role of large-scale motions in catalysis by dihydrofolate reductase. J Am Chem Soc 133(50):20561–20570

    Article  Google Scholar 

  • Osborne MJ, Venkitakrishnan RP, Dyson HJ, Wright PE (2003) Diagnostic chemical shift markers for loop conformation and substrate and cofactor binding in dihydrofolate reductase complexes. Prot Sci 12(10):2230–2238

    Article  Google Scholar 

  • Sawaya MR, Kraut J (1997) Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: crystallographic evidence. Biochemistry 36(3):586–603

    Article  Google Scholar 

  • Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED (2005) The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins 59(4):687–696

    Article  Google Scholar 

  • Xu Y, Nogi Y, Kato C, Liang Z, Rüger HJ, De Kegel D, Glansdorff N (2003a) Moritella profunda sp. nov. and Moritella abyssi sp. nov., two psychropiezophilic organisms isolated from deep Atlantic sediments. Int J Syst Evol Microbiol 53(2):533–538

    Article  Google Scholar 

  • Xu Y, Feller G, Gerday C, Glansdorff N (2003b) Moritella Cold-Active Dihydrofolate Reductase: are There Natural Limits to Optimization of Catalytic Efficiency at Low Temperature? J Bacteriol 185(18):5519–5526

    Article  Google Scholar 

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Acknowledgments

This work was supported by the UK’s Biotechnology and Biological Sciences Research Council (BBSRC) through grant BB/E008380/1 and Cardiff University. We thank the Wellcome Trust for open access to the Varian INOVA 900 MHz spectrometer at HWB-NMR, University of Birmingham, through Biomedical Resources grant 083796/Z/07/Z. We also thank the Wellcome Trust (WT082352MA) and the Engineering and Physical Sciences Research Council (EPSRC) (EP/F013515) for the Varian VNMRS 600 MHz cryo-probe at the University of Bristol.

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Correspondence to Rudolf K. Allemann.

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Loveridge, E.J., Matthews, S.M., Williams, C. et al. Aliphatic 1H, 13C and 15N chemical shift assignments of dihydrofolate reductase from the psychropiezophile Moritella profunda in complex with NADP+ and folate. Biomol NMR Assign 7, 61–64 (2013). https://doi.org/10.1007/s12104-012-9378-x

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