Abstract
Background
Hepatic fibrosis is the repair reaction of excessive deposition and abnormal distribution of extracellular matrix after various liver injuries, especially chronic HBV infection, which is a key step in the development of various chronic liver diseases to cirrhosis. Recent studies have showed that microRNAs (miRNAs) can regulate a series of liver fibrosis-related gene express and play an important role in the development of liver fibrosis. But the miRNAs expression profiling and the differentially expressed miRNAs in patients with HBV-related liver fibrosis were little known. This study aims to have a record of a systemic screening for liver fibrosis-associated miRNAs in patients infected with HBV.
Methods
A IlluminaHiSeq sequencing of plasma miRNAs from the HBV-related liver fibrosis patients (S2/3, n = 8) based on Scheuer’s staging criteria and from healthy volunteers 42 (n = 7) was performed. Cluster analysis and target gene prediction were performed for the differentially expressed miRNAs. Gene ontology (GO) analysis and KEGG pathway enrichment analysis also were performed on the differentially expressed target miRNA genes.
Results
Compared with the healthy control group, 77 miRNAs were screened out from the liver fibrosis group, among which 51 miRNAs were up-regulated and 26 miRNAs were down-regulated. Eventually, miR-98-5p was identified as a candidate predictor of liver fibrosis progression. miR-98-5p is reduced in activated LX2 cells, and miR-98-5p overexpression inhibited the HSCs activation. Mechanically, MiR-98-5p prevents liver fibrosis by targeting TGFbR1 and blocking TGFb1/Smad3 signaling pathway. Furthermore, serum miR-98-5p levels were measured from a total of 70 recruited patients with chronic HBV infection and 29 healthy individuals as controls. Serum miR-98-5p level was significantly lower in patients with liver fibrosis than in healthy controls and HBV carriers.
Conclusions
The expression of miRNAs in patients with liver fibrosis is significantly different from that of healthy volunteers. Many signal pathways of hepatic fibrosis are regulated by miRNAs. The potential value of miR-98-5p is as diagnostic biomarkers and therapeutic targets for HBV-related liver fibrosis.
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This is a resubmission of an earlier paper. The results/data/figures in this manuscript have not been published elsewhere, nor are they under consideration by another publisher.
References
Organization WH (2017) Global Hepatitis Report, 2017 (Global Hepatitis Report, 2017).
Chinese, Society, Of, Infectious, Diseases, Chinese, Medical, Association, Chinese, and Society. The guidelines of prevention and treatment for chronic hepatitis B (2019 version). Chin J Hepatol. 2019;27:938–961
Trautwein C, Friedman SL, Schuppan D, Pinzani M. Hepatic fibrosis: concept to treatment. J Hepatol. 2015;62:S15–S24
Ming L, Shi B, Wang J, Cao Q, Cui Q. TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs. BMC Bioinform. 2010;11:419
Chen X, Ba Y, Ma L, Cai X, Yin Y, Wang K, et al. Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res. 2008;10:997–1006
Margaret S, Ert E, Phillip AS. Roles for MicroRNAs in conferring robustness to biological processes-ScienceDirect. Cell. 2012;149:515–524
Lilla R, Correspondence A, Hardy R. RNA samples at present is the RNA Integrity Number (RIN) as calculated by the Agilent 2100 Bioanalyzer for electro- phoresis (Agilent Technologies UK Ltd, Edinburgh, UK).
Zheng Y, Xu Q, Chen H, Chen Q, Gong Z, Lai W. Transcriptome analysis of ultraviolet A‐induced photoaging cells with deep sequencing. J Dermatol 2017.
Li HY, Ju D, Zhang DW, Li H, Kong LM, Guo Y, et al. Activation of TGF-β1-CD147 positive feedback loop in hepatic stellate cells promotes liver fibrosis. Rep. 2015;5:16552
Friedlnder MR, Mackowiak SD, Li N, Chen W, Nikolaus R. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res 2012;37–52.
Ming-liang J, Jun L, Pei-liang S, Xue-jun Z, Shan-zheng W. Dysregulated miR-98 Contributes to Extracellular Matrix Degradation by Targeting IL-6/STAT3 Signaling Pathway in Human Intervertebral Disc Degeneration. J Bone Miner Res 2015; 900–909.
Zhang BY, Zhao Z, Jin Z. Expression of miR-98 in myocarditis and its influence on transcription of the FAS/FASL gene pair. Genet Mol Res 2016;15.
Yang G, Zhang X, Shi J. MiR-98 inhibits cell proliferation and invasion of non-small cell carcinoma lung cancer by targeting PAK1. Int J Clin Exp Med. 2015;8:20135–20145
Li HW, Meng Y, Xie Q, Yi WJ, Lai XL, Bian Q, et al. miR-98 protects endothelial cells against hypoxia/reoxygenation induced-apoptosis by targeting caspase-3. Biochem Biophys Res Commun. 2015;467:595–601
Fan YH, Ye MH, Wu L, Lv SG, Wu MJ, Xiao B, et al. Overexpression of miR-98 inhibits cell invasion in glioma cell lines via downregulation of IKKepsilon. Eur Rev Med Pharmacol Sci. 2015;19:3593–3604
Iga JEZ, Groppe JC, Cui Y, Hinck CS, Contreras-Shannon V, Pakhomova ON, et al. Assembly of TbetaRI:TbetaRII:TGFbeta ternary complex in vitro with receptor extracellular domains is cooperative and isoform-dependent. J Mol Biol. 2005;354:1052–1068
Zavadil J, Ttinger BEP. TGF-|[beta]| and epithelial-to-mesenchymal transitions. Oncogene. 2005;24:5764
Ten DP, Hill CS. New insights into TGF-beta-Smad signalling. Trends Biochem Sci. 2004;29:265–273
Gressner AM, Weiskirchen R. Modern pathogenetic concepts of liver fibrosis suggest stellate cells and TGF-beta as major players and therapeutic targets. J Cell Mol Med. 2006;10:76–99
Shi Y, Massagué J. Mechanisms of TGF-beta signaling from cell membrane to the nucleus. Cell. 2003;113:685–700
Jonathan F, Peter H. Pathogenesis and treatment of hepatic fibrosis: is cirrhosis reversible? Clin Med (Lond). 2011;11:179–183
Rockey DC, Caldwell SH, Goodman ZD, Nelson RC, Smith AD. Liver biopsy †. Hepatology. 2009;49:1017–1044
Branchi F, Conti CB, Baccarin A, Lampertico P, Fraquelli M. Non-invasive assessment of liver fibrosis in chronic hepatitis B. World J Gastroenterol. 2014;20:14568–14580
Zhang Q, Xu M, Qu Y, Li Z, Zhang Q, Cai X, Lu L. Analysis of the differential expression of circulating microRNAs during the progression of hepatic fibrosis in patients with chronic hepatitis B virus infection. Mol Med Rep. 2015.
Maubach G, Lim M, Chen J, Yang H, Lang Z. miRNA studies in in vitro and in vivo activated hepatic stellate cells. World J Gastroenterol. 2011;17:2748–2773
Guo CJ, Pan Q, Li DG, Sun H, Liu BW. miR-15b and miR-16 are implicated in activation of the rat hepatic stellate cell: an essential role for apoptosis. J Hepatol. 2009;50:766–778
Yong H, Huang C, Xu S, Long XR, Lv XW, Li J. MicroRNA-146a modulates TGF-beta1-induced hepatic stellate cell proliferation by targeting SMAD4. Cell Signal. 2012;24:1923–1930
Chen C, Wu CQ, Zhang ZQ, Yao DK, Liang Z. Loss of expression of miR-335 is implicated in hepatic stellate cell migration and activation. EXP CELL RES. 2011;317:1714–1725
Feng X, Tan W, Si C, Wang H, Zhou Y. Upregulation of microRNA-126 in hepatic stellate cells may affect pathogenesis of liver fibrosis through the NF-κB pathway. DNA Cell Biol 2015; 34.
Overexpression of miR-483–5p/3p cooperate to inhibit mouse liver fibrosis by suppressing the TGF-β stimulated HSCs in transgenic mice. J Cell Mol Med 2014;18.
Waidmann O, Bihrer V, Pleli T, Farnik H, Berger A, Zeuzem S, et al. Serum microRNA-122 levels in different groups of patients with chronic hepatitis B virus infection. J Viral Hepatitis. 2012;19:58–65
Roy S, B.F.V.C. (2015). miR‐30c and miR‐193 are a part of the TGF‐β‐dependent regulatory network controlling extracellular matrix genes in liver fibrosis. J DIGEST DIS 16.
Fang LEAHM. Circulating microRNAs as biomarkers for diffuse myocardial fibrosis in patients with hypertrophic cardiomyopathy. J Transl Med. 2015;13:1–12
Cardenas C, Henaoui IS, Courcot E, Roderburg C, Pottier N. miR-199a-5p is upregulated during fibrogenic response to tissue injury and mediates TGFbeta-induced lung fibroblast activation by targeting Caveolin-1. PLOS Genet. 2013;9:e1003291
Liang H, Xu C, Pan Z, Zhang Y, Xu Z, Chen Y, et al. The antifibrotic effects and mechanisms of microRNA-26a action in idiopathic pulmonary fibrosis. Mol Ther. 2014;22:1122–1133
Jiang T, Li M, Li Q, Guo Z, Sun X, Zhang X, Liu Y, Yao W, Xiao P. MicroRNA-98–5p inhibits cell proliferation and induces cell apoptosis in hepatocellular carcinoma via targeting IGF2BP1. Oncol Res. 2016
Siragam V, Rutnam ZJ, Yang W, Ling F, Yang BB. MicroRNA miR-98 inhibits tumor angiogenesis and invasion by targeting activin receptor-like kinase-4 and matrix metalloproteinase-11. Oncotarget. 2012;3:1370–1385
Ji ML, Lu J, Shi PL, Zhang XJ, Wang SZ, Chang Q, et al. Dysregulated miR-98 contributes to extracellular matrix degradation by targeting IL-6/STAT3 signaling pathway in human intervertebral disc degeneration. J Bone Miner Res. 2016;31:900–909
Safadi R, Friedman SL. Hepatic fibrosis-role of hepatic stellate cell activation. MedGenMed. 2002;4:27
Verrecchia F, Mauviel A. Transforming growth factor-β and fibrosis. World J Gastroenterol. 2007;13:3056–3062
Santibaez JF, Quintanilla M, Bernabeu C. TGF-beta/TGF-beta receptor system and its role in physiological and pathological conditions. Clin Sci. 2011;121:233–251
Funding
This work was supported by the Beijing Nova Program (No. Z201100006820051 to XY), National Science and Technology Major Project of China(2014ZX10005001 to HX, 2013ZX10002005 to JC), National Science and Technology Major Project of China(2017ZX10202202 to SY, 2018ZX10715-005 to SY), the Beijing municipal science and technology project of traditional Chinese medicine(JJ2014-25), the National Key Research and Development Program of China (No. 2017YFC0908104), the Seedling raising plan of Beijing Ditan Hospital, Capital Medical University (DTYM201616), Beijing Municipal Administration of Hospitals (No.ZYLX201402, No. DFL2015170) and Capital's Funds for Health Improvement and Research (CFH 2020–1-2171).
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YM and XY performed the experiments and wrote the manuscript; XY, MH, KH and PL collected blood samples from the HBV-related liver fibrosis patients; YM, XY, MH and YX analyzed and interpreted the data; SL contributed to scientific discussion; JC and HX designed the experiments, provided useful advice on the manuscript, and modified the manuscript.
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Yanhua Ma, Xiaoxue Yuan, Ming Han, Yifan Xu, Kai Han, Pu Liang, Shunai Liu, Jun Chen, Huichun Xing declare no competing interests.
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Ma, Y., Yuan, X., Han, M. et al. miR-98-5p as a novel biomarker suppress liver fibrosis by targeting TGFβ receptor 1. Hepatol Int 16, 614–626 (2022). https://doi.org/10.1007/s12072-021-10277-5
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DOI: https://doi.org/10.1007/s12072-021-10277-5