Mutual information for feature selection: estimation or counting?


In classification, feature selection is an important pre-processing step to simplify the dataset and improve the data representation quality, which makes classifiers become better, easier to train, and understand. Because of an ability to analyse non-linear interactions between features, mutual information has been widely applied to feature selection. Along with counting approaches, a traditional way to calculate mutual information, many mutual information estimations have been proposed to allow mutual information to work directly on continuous datasets. This work focuses on comparing the effect of counting approach and kernel density estimation (KDE) approach in feature selection using particle swarm optimisation as a search mechanism. The experimental results on 15 different datasets show that KDE can work well on both continuous and discrete datasets. In addition, feature subsets evolved by KDE achieves similar or better classification performance than the counting approach. Furthermore, the results on artificial datasets with various interactions show that KDE is able to capture correctly the interaction between features, in both relevance and redundancy, which can not be achieved by using the counting approach.

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We thank A/Prof Ivy Liu from School of Mathematics and Statistics,Victoria University of Wellington, who provided insight into ANOVA test and helped us to analyse the experimental results.

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Correspondence to Hoai Bach Nguyen.

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Nguyen, H.B., Xue, B. & Andreae, P. Mutual information for feature selection: estimation or counting?. Evol. Intel. 9, 95–110 (2016).

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  • Mutual information
  • Feature selection
  • Classification
  • Particle swarm optimisation