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Genetic Diversity of a Parasitic Weed, Striga hermonthica, on Sorghum and Pearl Millet in Mali

Abstract

Eleven populations of witchweed, Striga hermonthica, were collected in four regions of Mali and investigated with 12 microsatellite markers. Extensive genetic diversity was observed, with most plants heterozygous for most markers. Allelic diversity was broadly distributed across populations with little genetic differentiation and large amounts of gene flow. Nearby fields of pearl millet and sorghum were found to have indistinguishable witchweed populations. Some population structure was apparent, but did not correlate with the local environment or host genotype, suggesting that seed transportation or other human-driven variables act to differentiate central Malian S. hermonthica populations from southern Malian populations.

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References

  • Akiyama K, Matsuzaki H (2005) Plant sesquiterpenes induce hyphal branching in arbuscular mycorrhizal fungi. Nature 435(7043):824–827

    Article  PubMed  CAS  Google Scholar 

  • Ali R, El-Hussein A, Mohamed K, Babiker A (2009) Specificity and genetic relatedness among striga hermonthica strains in Sudan. Life Sci Int J 3(3):1159–1166 (ISSN:1992–1705)

    Google Scholar 

  • Bar-Nun N, Sachs T, Mayer AM (2008) A role for Iaa in the infection of arabidopsis thaliana by orobanche aegyptiaca. Ann Bot 101(2):261–265

    Article  PubMed  CAS  Google Scholar 

  • Berner D, Cardwell K, Faturoti B, Ikie F, Williams O (1994) Relative roles of wind, crop seeds, and cattle in dispersal of striga spp. Plant Dis 78:402–406

    Article  Google Scholar 

  • Bharathalakshmi C, Werth R, Musselman L (1990) A study of genetic diversity among host-specific populations of the witchweed Striga Hermonthica (Del.) Benth. (Scrophulariaceae) in Africa. Plant Syst Evol 172(1–4):1–12

    Article  Google Scholar 

  • Botanga CJ, Timko MP (2006) Phenetic relationships among different races of Striga gesnerioides (Willd.) Vatke from West Africa. Genome 49(11):1351–1365

    Article  PubMed  Google Scholar 

  • Botanga C, Kling J, Berner D, Timko M (2002) Genetic variability of Striga asiatica (L.) Kuntz based on AFLP analysis and host-parasite interaction. Euphytica 128:375–388

    Article  CAS  Google Scholar 

  • Doyle JJ, Doyle J (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15

    Google Scholar 

  • Ejeta G (2007a) Breeding for Striga resistance in sorghum: exploitation of an intricate host–parasite biology. Crop Sci 47:216–227

    Article  Google Scholar 

  • Ejeta G (2007b) The Striga scourge in Africa: a growing pandemic. In: Ejeta G, Gressel J (eds) Integrating new technologies for striga control: towards ending the witch-hunt. World Scientific Publishing Co. Pte. Ltd, Singapore, pp 71–84

    Chapter  Google Scholar 

  • Estep M, Van Mourik TA, Muth P, Guindo D, Parzies H, Koita O, Weltzien E, Bennetzen J (2010) Development of microsatellite markers for characterizing diversity in a parasitic witchweed, Striga hermonthica (Orobanchaceae). Mol Ecol Resour 10(6):1098–1105

    Article  Google Scholar 

  • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14(8):2611–2620

    Article  PubMed  CAS  Google Scholar 

  • Gethi G, Smith M, Mitchell S, Kresovich S (2005) Genetic diversity of Striga hermonthica and Striga asiatica populations in Kenya. Weed Res 45(1):64–73

    Article  CAS  Google Scholar 

  • Hamrick J (1982) Plant population genetics and evolution. Am J Bot 69(10):1685–1693

    Article  Google Scholar 

  • Keyes WJ, Taylor JV, Apkarian RP, Lynn DG (2001) Dancing together. Social controls in parasitic plant development. Plant Physiol 127(4):1508–1512

    Article  PubMed  CAS  Google Scholar 

  • Koyama M (2000) Genetic variability of Striga hermonthica and effects of resistant cultivars on striga population dynamics. In. Breeding for Striga resistance in cereals. Margraf Verlag, Germany, pp 247–260

    Google Scholar 

  • Kuiper E, Koevoets P, Verkleij J (1996) Genetic Variability of Striga aspera and Striga hermonthica. Are They Really Two Distinct Species? In. Sixth international Parasitic Weeds Symposium. Cordoba, Spain. 123–134

  • Matusova R, Rani K, Verstappen FW, Franssen MC, Beale MH, Bouwmeester HJ (2005) The strigolactone germination stimulants of the plant-parasitic Striga and Orobanche Spp. Are derived from the carotenoid pathway. Plant Physiol 139(2):920–934

    Article  PubMed  CAS  Google Scholar 

  • Mohamed K, Bolin J, Musselman L, Peterson A (2007) Genetic diversity of Striga and implications for control and modeling future distributions. In: Ejeta G, Gressel J (eds) Integrating new technologies for striga control: towards ending the witch-hunt., pp 71–84

    Chapter  Google Scholar 

  • Musselman LJ (1987) Parasitic weeds in agriculture—Striga. CRC Press, Inc, Baco Raton

    Google Scholar 

  • Olivier A, Glaszmann J, Lanaud C, Leroux G (1998) Population structure, genetic diversity and host specificity of the parasitic weed Striga hermonthica (Scrophulariaceae) in Sahel. Plant Syst Evol 209:33–45

    Article  Google Scholar 

  • Parker C, Reid D (1979) Host Specificity In Striga species—Some Preliminary Observations.In L. Musselman, A. WorshamR. Epplee. Proceedings of the second symposium on parasitic weeds. Raleigh, N.C.: North Carolina State University. 79–90

  • Peakall R, Smouse PE (2006) Genalex 6: genetic analysis in excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288–295

    Article  Google Scholar 

  • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155(2):945–959

    PubMed  CAS  Google Scholar 

  • Rousset F (2008) Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux. Mol Ecol Resour 8:103–106

    Article  Google Scholar 

  • Safa S, Jones B, Musselman L (1984) Mechanisms favoring outbreeding in Striga hermonthica (Scrophulariaceae). New Phytol 96:299–305

    Article  Google Scholar 

  • Schuelke M (2000) An economic method for the florescent labeling of PCR fragments. Nature Biotechnology 18:233–234

    Google Scholar 

  • Shawe K, Ingrouille M (1993) Isozyme analysis demonstrates host selection of parasitic pathotypes in the association between Cowpea and S. gesnerioides. Brighton Crop Prot Conf Weeds 2:919–924

    Google Scholar 

  • Slatkin M (1995) A measure of population subdivision based on microsatellite Allele frequencies. Genetics 139:457

    PubMed  CAS  Google Scholar 

  • Timko M, Gowda B, Ouedraogo J, Ousmane B (2007) Molecular markers for analysis of resistance to Striga gesnerioides in Cowpea. In: Ejeta G, Gressel J (eds) Integrating new technologies for Striga control: towards ending the Witch-Hunt. World Scientific Publishing Co. Pte. Ltd, Singapore, pp 71–84

    Google Scholar 

  • Yoshida S, Shirasu K (2009) Multiple layers of incompatibility to the parasitic Witchweed, Striga hermonthica. New Phytol 183(1):180–189

    Article  PubMed  Google Scholar 

  • Yoshida S, Ishida J, Kamal N, Abdelbagi A, Namba S, Shirasu K (2010) A full-length enriched CDNA library and expressed sequence tag analysis of the Parasitic Weed, Striga hermonthica. BMC Plant Biology 10

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Acknowledgments

We would like to thank Drs. John Burke and John Wares for comments that greatly improved this manuscript. We would also like to thank Sidi Dembele and Abdoulaye Bah for their assistance in field collection of Striga populations. This researchwas supported by grants from the Fulbright Foundation, the Guggenheim Foundation and the International Crop Research Institute for the Semi-Arid Tropics.

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Correspondence to Matt C. Estep.

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Communicated by Ray Ming

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Estep, M.C., Van Mourik, T.A., Muth, P. et al. Genetic Diversity of a Parasitic Weed, Striga hermonthica, on Sorghum and Pearl Millet in Mali. Tropical Plant Biol. 4, 91–98 (2011). https://doi.org/10.1007/s12042-011-9073-6

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  • DOI: https://doi.org/10.1007/s12042-011-9073-6

Keywords

  • Microsatellite markers
  • Striga hermonthica
  • Sub-Saharan Africa
  • Subsistence agriculture
  • Witchweed