Skip to main content
Log in

MCM2 mutation causes autosomal dominant nonsyndromic hearing loss (DFNA70): novel variant in the second family

  • Research Note
  • Published:
Journal of Genetics Aims and scope Submit manuscript

Abstract

Pathogenic variants in MCM2 could result in mild to severe sensorineural hearing loss in the affected individuals (deafness, autosomal dominant 70; DFNA70; OMIM: 616968), an extremely rare autosomal dominant progressive disorder. Here, we report a novel missense variant (NM_004526:c.388C>T, p.R130C; Clinvar: SCV002072508) in MCM2 in an Iranian family identified by whole-exome sequencing and confirmed by Sanger sequencing. The heterozygous variant (NM_004526:c.388C>T, p.R130C) in MCM2 was identified in the proband and his mother. The proband is a nine-year-old male born to nonconsanguineous parents. The proband was characterized by nonsyndromic hearing loss, while his mother showed a mild form of the disorder. This study reports the second disease-causing variant in MCM2 in the world and confirms that hearing loss arising from variants in MCM2 is nonsyndromic. Nevertheless, as was reported in the previous family, phenotype could vary among the patients with the same variant.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Figure 1
Figure 2
Figure 3

References

  • Azaiez H., Booth K. T., Ephraim S. S., Crone B., Black-Ziegelbein E. A., Marini R. J. et al. 2018 Genomic Landscape and Mutational Signatures of Deafness-Associated Genes. Am. J. Hum. Genet. 103, 484–497.

    Article  CAS  Google Scholar 

  • Bayazit Y. A. and Yilmaz M. 2006 An overview of hereditary hearing loss. Orl 68, 57–63.

    Article  Google Scholar 

  • Berman H. M., Westbrook J., Feng Z., Gilliland G., Bhat T. N., Weissig H. et al. 2000 The Protein Data Bank. Nucleic Acids Res. 28, 235–242.

    Article  CAS  Google Scholar 

  • Gao J., Wang Q., Dong C., Chen S., Qi Y. and Liu Y. 2015 Whole exome sequencing identified MCM2 as a novel causative gene for autosomal dominant nonsyndromic deafness in a Chinese family. PLoS One 10, 75–80.

    Google Scholar 

  • Gürtler N. and Lalwani A. K. 2002 Etiology of syndromic and nonsyndromic sensorineural hearing loss. Otolaryngol. Clin. North Am. 35, 891–908.

    Article  Google Scholar 

  • Hunter S., Apweiler R., Attwood T. K., Bairoch A., Bateman A., Binns D. et al. 2009 InterPro: the integrative protein signature database. Nucleic Acids Res. 37(Database issue), D211–D215.

    Article  CAS  Google Scholar 

  • Ishimi Y. 2018 Regulation of MCM2-7 function CDC45.

  • Lei M., Kawasaki Y., Young M. R., Kihara M., Sugino A. and Tye B. K. 1997 Mcm2 is a target of regulation by Cdc7–Dbf4 during the initiation of DNA synthesis. Genes Dev. 11, 3365–3374.

  • Li H. and Durbin R. 2010 Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26, 589–595.

    Article  Google Scholar 

  • Mincheva A., Todorov I., Werner D., Fink T. M. and Lichter P. 1994 The human gene for nuclear protein BM28 (CDCL1), a new member of the early S-phase family of proteins, maps to chromosome band 3q21. Cytogenet. Genome Res. 65, 276–277.

    Article  CAS  Google Scholar 

  • Ramer M. D., Suman E. S., Richter H., Stanger K., Spranger M., Bieberstein N. et al. 2013 Dbf4 and Cdc7 proteins promote DNA replication through interactions with distinct Mcm2–7 protein subunits. J. Biol. Chem. 288, 14926–14935.

  • Raviv D., Dror A. A. and Avraham K. B. 2010 Hearing loss: A common disorder caused by many rare alleles. Ann. N. Y. Acad. Sci. 1214, 168–179.

    Article  CAS  Google Scholar 

  • Ren J., Wen L., Gao X., Jin C., Xue Y. and Yao X. 2009 DOG 1.0: illustrator of protein domain structures. Cell Res. 19, 271–273.

    Article  CAS  Google Scholar 

  • Richards S., Aziz N., Bale S., Bick D., Das S., Gastier-Foster J. et al. 2015 Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet. Med. 17, 405–423.

    Article  Google Scholar 

  • Rodrigues C. H. M., Pires D. E. V. and Ascher D. B. 2018 DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability. Nucleic Acids Res. 46, W350–W355.

    Article  CAS  Google Scholar 

  • Rychlik W. 2007 OLIGO 7 primer analysis software. Methods Mol. Biol. 402, 35–60.

    Article  CAS  Google Scholar 

  • Suzuki S., Kurata M., Abe S., Miyazawa R., Murayama T., Hidaka M. et al. 2012 Overexpression of MCM2 in myelodysplastic syndromes: association with bone marrow cell apoptosis and peripheral cytopenia. Exp. Mol. Pathol. 92, 160–166.

    Article  CAS  Google Scholar 

  • Suzuki Y., Yamaguchi Y., Hanada H. and Ishimi Y. 2019 Changes in MCM2–7 proteins at senescence. Genes Genet. Syst. 94, 123–132.

    Article  CAS  Google Scholar 

  • Todorov I. T., Pepperkok R., Philipova R. N., Kearsey S. E., Ansorge W. and Werner D. 1994 A human nuclear protein with sequence homology to a family of early S phase proteins is required for entry into S phase and for cell division. J. Cell Sci. 107, 253–265.

  • Wang K., Li M. and Hakonarson H. 2010 ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 38, e164.

    Article  Google Scholar 

  • Yuan Z., Riera A., Bai L., Sun J., Nandi S., Spanos C. et al. 2017 Structural basis of Mcm2–7 replicative helicase loading by ORC–Cdc6 and Cdt1. Nat. Struct. Mol. Biol. 24, 316–324.

Download references

Acknowledgments

The authors thank the Comprehensive Medical Genetics Center, Shiraz, Fars Province, Iran and its members for their invaluable contribution to this study.

Author information

Authors and Affiliations

Authors

Contributions

ZZ, conceptualization, methodology. MD, conceptualization, supervision. ASS, writing - original draft. NK, conceptualization, methodology, writing - original draft. HJK, methodology, project administration. SZ, investigation. SM, methodology. SST, writing and editing. SAD, physical examination and clinical characterization. SMBT, physical examination and clinical characterization.

Corresponding author

Correspondence to Mehdi Dianatpour.

Additional information

Corresponding editor: Ashwin Dalal

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zeraatpisheh, Z., Sichani, A.S., Kamal, N. et al. MCM2 mutation causes autosomal dominant nonsyndromic hearing loss (DFNA70): novel variant in the second family. J Genet 101, 24 (2022). https://doi.org/10.1007/s12041-022-01364-z

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s12041-022-01364-z

Keywords

Navigation