Skip to main content

Advertisement

Log in

‘Distal 16p12.2 microdeletion’ in a patient with autosomal recessive deafness-22

  • Research Note
  • Published:
Journal of Genetics Aims and scope Submit manuscript

Abstract

The 16p12.2 chromosome band contains three large segmental duplications: BP1, BP2 and BP3, providing a substrate for recombination and recurrent chromosomal rearrangements. The ‘16p12.2 microdeletion’ is a recurrent deletion comprised between BP2 and BP3, associated with variable clinical findings. We identified a heterozygous 16p12.2 microdeletion spanning between BP1 and BP2 in a child evaluated for short stature and mild dyslexia. Unexpectedly, the mother carried the same deletion in the homozygous state and suffered from severe hearing loss. Detailed family history revealed consanguinity of the maternal grandparents. The 16p12.2 microdeletion is a rare condition and contains only three genes: METTL9, IGSF6 and OTOA of which the OTOA is considered responsible for DFNB22 hearing loss (MIM: 607039) under its homozygous condition. A number of OTOA mutations have been described, whereas very few cases of a 16p12.2 microdeletion similar to that observed in our family have been reported. In conclusion, we describe a rare ‘distal 16p12.2 microdeletion’ widening the phenotypic spectrum associated with the recurrent 16p12.2 microdeletion and support the causative role of OTOA microdeletion in hearing impairment.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

References

  • Antonacci F., Kidd J. M., Marques-Bonet T., Teague B., Ventura M., Girirajan S. et al. 2010 A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk. Nat. Genet. 42, 745–750.

    Article  CAS  Google Scholar 

  • Bademci G., Diaz-Horta O., Guo S., Duman D., Van Booven D., Foster J. et al. 2014 Identification of copy number variants through whole-exome sequencing in autosomal recessive nonsyndromic hearing loss. Genet. Test. Mol. Biomark. 18, 658–661.

    Article  CAS  Google Scholar 

  • Girirajan S., Rosenfeld J. A., Cooper G. M., Antonacci F., Siswara P., Itsara A. et al. 2010 A recurrent 16p12.1 microdeletion supports a two-hit model for severe developmental delay. Nat. Genet. 42, 203–209.

    Article  CAS  Google Scholar 

  • Girirajan S., Rosenfeld J. A., Coe B. P., Parikh S., Friedman N., Goldstein A. et al. 2012 Phenotypic heterogeneity of genomic disorders and rare copy-number variants. N. Engl. J. Med. 367, 1321–1331.

    Article  CAS  Google Scholar 

  • Kemper A. R. and Downs S. M. A. 2000 A cost-effectiveness analysis of newborn hearing screening strategies. Arch. Pediatr. Adolesc. Med. 154, 484–488.

    Article  CAS  Google Scholar 

  • Lee K., Chiu I., Santos-Cortez R. L., Basit S., Khan S., Azeem Z. et al. 2013 Novel OTOA mutations cause autosomal recessive non-syndromic hearing impairment in Pakistani families. Clin. Genet. 84, 294–296.

    Article  CAS  Google Scholar 

  • Lukashkin A. N., Legan P. K., Weddell T. D., Lukashkina V. A., Goodyear R. J., Welstead L. J. et al. 2012 Mouse model for human deafness DFNB22 reveals that hearing impairment is due to a loss of inner hair cell stimulation. Proc. Natl. Acad. Sci. USA 20, 19351–19356.

    Article  Google Scholar 

  • Lupski J. R. 1998 Genomic disorders: structural features of the genome can lead to DNA rearrangements and human disease traits. Trends Genet. 14, 417–422.

    Article  CAS  Google Scholar 

  • Pizzo L., Andrieux J., Amor D. J. and Girirajan S. 2017 Clinical utility gene card for: 16p12.2 microdeletion. Eur. J. Hum. Genet. 25 (https://doi.org/10.1038/ejhg.2016.158)

  • Shahin H. T., Walsh A. A., Rayyan M. K., Lee J., Higgins D., Dickel D. et al. 2010 Five novel loci for inherited hearing loss mapped by SNP-based homozygosity profiles in Palestinian families. Eur. J. Hum. Genet. 18, 407–413.

    Article  CAS  Google Scholar 

  • Zwaenepoel I., Mustapha M., Leibovici M., Verpy E. and Goodyear R. 2002 Otoancorin, an inner ear protein restricted to the interface between the apical surface of sensory epithelia and their overlying acellular gels, is defective in autosomal recessive deafness DFNB22. Proc. Natl. Acad. Sci. USA 30, 6240–6245.

    Article  Google Scholar 

Download references

Acknowledgements

We thank the parents for their kind participation and support. We are grateful to Marco Bertorello and CorradoTorello for their technical assistance. This work was supported by ‘Cinque per mille dell’IRPEF-Finanziamento della ricerca sanitaria’ and ‘Finanziamento Ricerca Corrente, Ministero Salute (contributo per la ricerca intramurale)’.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Elisa Tassano.

Additional information

Corresponding Editor: H. A. Ranganath

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Tassano, E., Ronchetto, P., Calcagno, A. et al. ‘Distal 16p12.2 microdeletion’ in a patient with autosomal recessive deafness-22. J Genet 98, 56 (2019). https://doi.org/10.1007/s12041-019-1107-0

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s12041-019-1107-0

Keywords

Navigation