Skip to main content
Log in

Identification and characterization of twenty-seven short interspersed elements from three cetaceans

  • ONLINE RESOURCES
  • Published:
Journal of Genetics Aims and scope Submit manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Figure 1
Figure 2
Figure 3
Figure 4

References

  • Chen Z. and Yang G. 2010 Novel CHR-2 subfamilies and t-SINEs identified in cetaceans using nonradioactive Southern blotting. Genes Genomics 32, 345–352.

  • Chen Z., Xu S., Zhou K. and Yang G. 2011 Whale phylogeny and rapid radiation events revealed using novel retroposed elements and their flanking sequences. BMC Evol. Biol. 11, 314.

  • Deininger P. L. 1989 SINEs: Short interspersed repeated DNA elements in higher eukaryotes mobile DNA. American Society for Microbiology, Washington DC.

  • Galli G., Hofstetter H. and Birnstiel M. L. 1981 Two conserved sequence blocks within eukaryotic tRNA genes are major promoter elements. Nature 294, 626–631.

  • Gogolevsky K. P., Vassetzky N. S. and Kramerov D. A. 2009 5S rRNA-derived and tRNA-derived SINEs in fruit bats. Genomics 93, 494–500.

  • Kramerov D. A. and Vassetzky N. S. 2005 Short retroposons in eukaryotic genomes. Int. Rev. Cytol. 247, 165–221.

  • Kriegs J. O., Churakov G. Kiefmann M., Jordan U., Brosius J., and Schmitz J. 2006 Retroposed elements as archives for the evolutionary history of placental mammals. PLoS. Biol. 4, e91.

  • Li J., Han K., Xing J., Kim H., Rogers J., Ryder O. A., Disotell T., Yue B. and Batzer M. A. 2009 Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements. Gene 448, 242–249.

  • Nikaido M., Matsuno F., Abe H., Shimamura M., Hamilton H., Matsubayashi H. and Okada N. 2001 Evolution of CHR-2 SINEs in cetartiodactyl genomes: possible evidence for the monophyletic origin of toothed whales. Mamm. Genome 12, 909–915.

  • Nikaido M., Nishihara H., Hukumoto Y. and Okada N. 2003 Ancient SINEs from African endemic mammals. Mol. Biol. Evol. 20 4, 522–527.

  • Okada N., Hamada M., Ogiwara I. and Ohshima K. 1997 SINEs and LINEs share common 3′ sequences: a review. Gene 205, 229–243.

  • Okada N. 1991a SINEs. Curr. Opin. Genet. Dev. 1, 498–504.

  • Okada N. 1991b SINEs: short interspersed repeated elements of the eukaryotic genome. Trends Ecol. Evol. 6, 358–361.

  • Ray D. A. 2007 SINEs of progress: Mobile element applications to molecular ecology. Mol. Ecol. 16, 19–33.

  • Rogers J. H. 1985 The origin and evolution of retroposons. Int. Rev. Cytol. 93, 187–279.

  • Sambrook J. and Russell D. W. 2006 Molecular cloning, 4th edition. Cold Spring Harbor Laboratory Press, New York, USA.

  • Shedlock A. M. and Okada N. 2000 SINE insertions: powerful tools for molecular systematics. BioEssays 22, 148–160.

  • Shimamura M., Yasue H., Ohshima K., Abe H., Kato H., Kishiro T., Goto M., Munechika I. and Okada N. 1997 Molecular evidence from retroposons that whales form a clade within even-toed ungulates. Nature 388, 666–670.

  • Shimamura M., Abe H., Nikaido N., Ohshima K. and Okada N. 1999 Genealogy of families of SINEs in cetaceans and artiodactyls; the presence of a huge super family of tRNA derived families of SINEs. Mol. Biol. Evol., 16, 1046–1060.

  • Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F. and Higgins D. G. 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24, 4876–4882.

  • Weiner A. M., Deininger P. L. and Efstratiadis A. 1986 Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information. Annu. Rev. Biochem. 55, 631–661.

Download references

Acknowledgements

Financial support was provided by the National Natural Science Foundation of China (NSFC) to GY (grant no. 30830016), the Specialized Research Fund for the Doctoral programme of Higher Education (grant no. 20103207120020), the Priority Academic programme Development of Jiangsu Higher Education Institutions to GY, and the Scientific Research Foundation of HNNU to ZC (grant no. 01046500138).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to GUANG YANG.

Additional information

[Chen Z. and Yang G. 2014 Identification and characterization of 27 short interspersed elements from three cetaceans. J. Genet. 93, e56–e61. Online only: http://www.ias.ac.in/OnlineResources/93/e56.pdf]

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

CHEN, Z., YANG, G. Identification and characterization of twenty-seven short interspersed elements from three cetaceans. J Genet 94 (Suppl 1), 56–61 (2015). https://doi.org/10.1007/s12041-014-0367-y

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12041-014-0367-y

Keywords

Navigation