Abifadel M., Varret M., Rabes J. P., Allard D., Ouguerram K., Devillers M. et al. 2003 Mutations in PCSK9 cause autosomal dominant hypercholesterolemia. Nat. Genet.
34, 154–156.
CAS
PubMed
Article
Google Scholar
Achilli A., Olivieri A., Pala M., Hooshiar Kashani B., Carossa V., Perego U.A. et al. 2011 Mitochondrial DNA backgrounds might modulate diabetes complications rather than T2DM as a whole. PLoS One
6, e21029.
Google Scholar
Aliev G., Smith M. A., Obrenovich M. E., De La Torre J. C. and Perry G. 2003 Role of vascular hypoperfusion-induced oxidative stress and mitochondria failure in the pathogenesis of Alzheimer disease. Neurotox. Res.
5, 491–504.
PubMed
Article
Google Scholar
Al-Kateb H., Mirea L., Xie X., Sun L., Liu M., Chen H. et al. 2007 Multiple variants in vascular endothelial growth factor (VEGFA) are risk factors for time to severe retinopathy in type 1 diabetes: the DCCT/EDIC genetics study. Diabetes
56, 2161–2168.
Google Scholar
Arar N. H., Freedman B. I., Adler S. G., Iyengar S. K., Chew E. Y., Davis M. D. et al. 2008 Heritability of the severity of diabetic retinopathy: the FIND-Eye study. Invest. Ophthalmol. Vis. Sci.
49, 3839–3845.
Google Scholar
Ashburner B. P., Westerheide S. D. and Baldwin Jr A. S. 2001 The p65 (RelA) subunit of NF-kappaB interacts with the histone deacetylase (HDAC) corepressors HDAC1 and HDAC2 to negatively regulate gene expression. Mol. Cell Biol.
21, 7065–7077.
CAS
PubMed Central
PubMed
Article
Google Scholar
Aubo C., Senti M., Marrugat J., Tomas M., Vila J., Sala J. et al. 2000 Risk of myocardial infarction associated with Gln/Arg 192 polymorphism in the human paraoxonase gene and diabetes mellitus. The REGICOR investigators. Eur. Heart J.
21, 33–38.
Google Scholar
Awata T., Inoue K., Kurihara S., Ohkubo T., Watanabe M., Inukai K. et al. 2002 A common polymorphism in the 5′-untranslated region of the VEGF gene is associated with diabetic retinopathy in type 2 diabetes. Diabetes
51, 1635–1639.
Google Scholar
Awata T., Kurihara S., Takata N., Neda T., Iizuka H., Ohkubo T. et al. 2005 Functional VEGF C-634G polymorphism is associated with development of diabetic macular edema and correlated with macular retinal thickness in type 2 diabetes. Biochem. Biophys. Res. Commun.
333, 679–685.
Google Scholar
Ballinger S.W., Shoffner J..M., Hedaya E. V., Trounce I., Polak M. A., Koontz D. A. et al. 1992 Maternally transmitted diabetes and deafness associated with a 10.4 kb mitochondrial DNA deletion. Nat. Genet.
1, 11–15.
CAS
PubMed
Article
Google Scholar
Barakat K. and Hitman G. A. 2001 Genetic susceptibility to macrovascular complications of type 2 diabetes mellitus. Best Pract. Res. Clin. Endocrinol. Metab.
15, 359–370.
CAS
PubMed
Article
Google Scholar
Barski A., Jothi R., Cuddapah S., Cui K., Roh T. Y., Schones D. E. et al. 2009 Chromatin poises miRNA- and protein-coding genes for expression. Genome Res.
19, 1742–1751.
CAS
PubMed
Article
Google Scholar
Bartel D. P. 2009 MicroRNAs: target recognition and regulatory functions. Cell
136, 215–233.
CAS
PubMed Central
PubMed
Article
Google Scholar
Bell C. G., Teschendorff A. E., Rakyan V. K., Maxwell A. P., Beck S. and Savage D. A. 2010 Genome-wide DNA methylation analysis for diabetic nephropathy in type 1 diabetes mellitus. BMC Med. Genomics
3, 33.
PubMed Central
PubMed
Article
CAS
Google Scholar
Bieliauskas A. V. and Pflum M. K. 2008 Isoform-selective histone deacetylase inhibitors. Chem. Soc. Rev.
37, 1402–1413.
CAS
PubMed Central
PubMed
Article
Google Scholar
Bowden D. W. 2002 Genetics of diabetes complications. Curr. Diabetes Rep.
2, 191–200.
Article
Google Scholar
Bowden D. W., Colicigno C. J., Langefeld C. D., Sale M. M., Williams A., Anderson P. J. et al. 2004 A genome scan for diabetic nephropathy in African Americans. Kidney Int.
66, 1517–1526.
CAS
PubMed
Article
Google Scholar
Brasacchio D., Okabe J., Tikellis C., Balcerczyk A., George P., Baker E. K. et al. 2009 Hyperglycemia induces a dynamic cooperativity of histone methylase and demethylase enzymes associated with gene-activating epigenetic marks that coexist on the lysine tail. Diabetes
58, 1229–1236.
CAS
PubMed
Article
Google Scholar
Broadbent H. M., Peden J. F., Lorkowski S., Goel A., Ongen H., Green F. et al. 2008 Susceptibility to coronary artery disease and diabetes is encoded by distinct, tightly linked SNPs in the ANRIL locus on chromosome 9p. Hum. Mol. Genet.
17, 806–814.
CAS
PubMed
Article
Google Scholar
Brookes A. J. 1999 The essence of SNPs. Gene
234, 177–186.
CAS
PubMed
Article
Google Scholar
Browning B. L. and Browning S. R. 2007 Efficient multilocus association testing for whole genome association studies using localized haplotype clustering. Genet. Epidemiol.
31, 365–375.
PubMed
Article
Google Scholar
Brownlee M. 2001 Biochemistry and molecular cell biology of diabetic complications. Nature
414, 813–820.
CAS
PubMed
Article
Google Scholar
Buchbinder S., Rudofsky Jr G., Humpert P. M., Schilling T., Zorn M., Bierhaus A. et al. 2008 The DG10S478 variant in the TCF7L2 gene is not associated with microvascular complications in type 2 diabetes. Exp. Clin. Endocrinol. Diabetes
116, 211–214.
CAS
PubMed
Article
Google Scholar
Buraczynska M., Ksiazek P., Baranowicz-Gaszczyk I. and Jozwiak L. 2007 Association of the VEGF gene polymorphism with diabetic retinopathy in type 2 diabetes patients. Nephrol. Dial. Transplant
22, 827–832.
CAS
PubMed
Article
Google Scholar
Canani L. H., Ng D. P., Smiles A., Rogus J. J., Warram J. H. and Krolewski A. S. 2002 Polymorphism in ecto-nucleotide pyrophosphatase/phosphodiesterase 1 gene (ENPP1/PC-1) and early development of advanced diabetic nephropathy in type 1 diabetes. Diabetes
51, 1188–1193.
CAS
PubMed
Article
Google Scholar
Canani L. H., Capp C., Ng D. P., Choo S. G., Maia A. L., Nabinger G. B. et al. 2005a The fatty acid-binding protein-2 A54T polymorphism is associated with renal disease in patients with type 2 diabetes. Diabetes
54, 3326–3330.
Canani L. H., Costa L. A., Crispim D., Goncalves Dos Santos K., Roisenberg I., Lisboa H. R. et al. 2005b The presence of allele D of angiotensin-converting enzyme polymorphism is associated with diabetic nephropathy in patients with less than 10 years duration of Type 2 diabetes. Diabetes Med.
22, 1167–1172.
Care A., Catalucci D., Felicetti F., Bonci D., Addario A., Gallo P. et al. 2007 MicroRNA-133 controls cardiac hypertrophy. Nat. Med.
13, 613–618.
Google Scholar
Carter A. M., Mansfield M. W., Stickland M. H. and Grant P. J. 1996 Beta-fibrinogen gene-455 G/A polymorphism and fibrinogen levels. Risk factors for coronary artery disease in subjects with NIDDM. Diabetes Care
19, 1265–1268.
CAS
PubMed
Article
Google Scholar
Cauchi S. and Froguel P. 2008 TCF7L2 genetic defect and type 2 diabetes. Curr. Diabetes Rep.
8, 149–155.
CAS
Article
Google Scholar
Cauchi S., Meyre D., Durand E., Proenca C., Marre M., Hadjadj S. et al. 2008 Post genome-wide association studies of novel genes associated with type 2 diabetes show gene-gene interaction and high predictive value. PLoS One
3, e2031.
Article
CAS
Google Scholar
Ceriello A., Ihnat M. A. and Thorpe J. E. 2009 Clinical review 2: The “metabolic memory”: is more than just tight glucose control necessary to prevent diabetic complications? J. Clin. Endocrinol. Metab.
94, 410–415.
CAS
PubMed
Article
Google Scholar
Chakrabarti S. K., Francis J., Ziesmann S. M., Garmey J. C. and Mirmira R. G. 2003 Covalent histone modifications underlie the developmental regulation of insulin gene transcription in pancreatic beta cells. J. Biol. Chem.
278, 23617–23623.
CAS
PubMed
Article
Google Scholar
Chapman J. and Clayton D. 2007 Detecting association using epistatic information. Genet. Epidemiol.
31, 894–909.
PubMed
Article
Google Scholar
Chen S., Feng B., George B., Chakrabarti R., Chen M. and Chakrabarti S. 2010 Transcriptional coactivator p300 regulates glucose-induced gene expression in endothelial cells. Am. J. Physiol. Endocrinol. Metab.
298, E127–E137.
Article
CAS
Google Scholar
Chen X., Wang K., Chen J., Guo J., Yin Y., Cai X. et al. 2009 In vitro evidence suggests that miR-133a-mediated regulation of uncoupling protein 2 (UCP2) is an indispensable step in myogenic differentiation. J. Biol. Chem.
284, 5362–5369.
CAS
PubMed
Article
Google Scholar
Cheng L. C., Pastrana E., Tavazoie M. and Doetsch F. 2009 miR-124 regulates adult neurogenesis in the subventricular zone stem cell niche. Nat. Neurosci.
12, 399–408.
CAS
PubMed Central
PubMed
Article
Google Scholar
Cheng X., Shi L., Nie S., Wang F., Li X., Xu C. et al. 2011 The same chromosome 9p21.3 locus is associated with type 2 diabetes and coronary artery disease in a Chinese Han population. Diabetes
60, 680–684.
CAS
PubMed
Article
Google Scholar
Churchill A. J., Carter J. G., Ramsden C., Turner S. J., Yeung A., Brenchley P. E. et al. 2008 VEGF polymorphisms are associated with severity of diabetic retinopathy. Invest. Ophthalmol. Vis. Sci.
49, 3611–3616.
PubMed
Article
Google Scholar
Cook Jr E. H. and Scherer S. W. 2008 Copy-number variations associated with neuropsychiatric conditions. Nature
455, 919–923.
CAS
PubMed
Article
Google Scholar
Davies J. L., Kawaguchi Y., Bennett S. T., Copeman J. B., Cordell H. J., Pritchard L. E. et al. 1994 A genome-wide search for human type 1 diabetes susceptibility genes. Nature
371, 130–136.
Google Scholar
Doria A., Wojcik J., Xu R., Gervino E. V., Hauser T. H., Johnstone M. T. et al. 2008 Interaction between poor glycemic control and 9p21 locus on risk of coronary artery disease in type 2 diabetes. J. Am. Med. Assoc.
300, 2389–2397.
Google Scholar
Durlach A., Clavel C., Girard-Globa A. and Durlach V. 1999 Sex-dependent association of a genetic polymorphism of cholesteryl ester transfer protein with high-density lipoprotein cholesterol and macrovascular pathology in type II diabetic patients. J. Clin. Endocrinol. Metab.
84, 3656–3659.
CAS
PubMed
Google Scholar
Elbein S. C. and Hasstedt S. J. 2002 Quantitative trait linkage analysis of lipid-related traits in familial type 2 diabetes: evidence for linkage of triglyceride levels to chromosome 19q. Diabetes
51, 528–535.
CAS
PubMed
Article
Google Scholar
El-Osta A., Brasacchio D., Yao D., Pocai A., Jones P. L., Roeder R. G. et al. 2008 Transient high glucose causes persistent epigenetic changes and altered gene expression during subsequent normoglycemia. J. Exp. Med.
205, 2409–2417.
Google Scholar
Erdmann J., Grosshennig A., Braund P. S., Konig I. R., Hengstenberg C., Hall A. S. et al. 2009 New susceptibility locus for coronary artery disease on chromosome 3q22.3. Nat. Genet.
41, 280–282.
Article
CAS
Google Scholar
Esau C., Davis S., Murray S. F., Yu X. X., Pandey S. K., Pear M. et al. 2006 miR-122 regulation of lipid metabolism revealed by in vivo antisense targeting. Cell Metab.
3, 87–98.
CAS
PubMed
Article
Google Scholar
Feng B., Chen S., Chiu J., George B. and Chakrabarti S. 2008 Regulation of cardiomyocyte hypertrophy in diabetes at the transcriptional level. Am. J. Physiol. Endocrinol. Metab.
294, E1119–E1126.
Article
CAS
Google Scholar
Feng B., Chen S., George B., Feng Q. and Chakrabarti S. 2010 miR133a regulates cardiomyocyte hypertrophy in diabetes. Diabetes Metab. Res. Rev. 26, 40–49.
CAS
PubMed
Article
Google Scholar
Fichtlscherer S., De Rosa S., Fox H., Schwietz T., Fischer A., Liebetrau C. et al. 2010 Circulating microRNAs in patients with coronary artery disease. Circ. Res.
107, 677–684.
CAS
PubMed
Article
Google Scholar
Fogarty D. G., Rich S. S., Hanna L., Warram J. H. and Krolewski A. S. 2000 Urinary albumin excretion in families with type 2 diabetes is heritable and genetically correlated to blood pressure. Kidney Int.
57, 250–257.
CAS
PubMed
Article
Google Scholar
Frayling T. M. 2007 Genome-wide association studies provide new insights into type 2 diabetes aetiology. Nat. Rev. Genet.
8, 657–662.
CAS
PubMed
Article
Google Scholar
Freeman J. L., Perry G. H., Feuk L., Redon R., Mccarroll S. A., Altshuler D. M. et al. 2006 Copy number variation: new insights in genome diversity. Genome Res.
16, 949–961.
CAS
PubMed
Article
Google Scholar
Fujisawa T., Ikegami H., Kawaguchi Y., Yamato E., Nakagawa Y., Shen G. Q. et al. 1999 Length rather than a specific allele of dinucleotide repeat in the 5′ upstream region of the aldose reductase gene is associated with diabetic retinopathy. Diabetes Med.
16, 1044–1047.
Google Scholar
Gaikwad A. B., Sayyed S. G., Lichtnekert J., Tikoo K. and Anders H. J. 2010 Renal failure increases cardiac histone h3 acetylation, dimethylation, and phosphorylation and the induction of cardiomyopathy-related genes in type 2 diabetes. Am. J. Pathol.
176, 1079–1083.
CAS
PubMed
Article
Google Scholar
Gallagher I. J., Scheele C., Keller P., Nielsen A. R., Remenyi J., Fischer C. P. et al. 2010 Integration of microRNA changes in vivo identifies novel molecular features of muscle insulin resistance in type 2 diabetes. Genome Med.
2, 9.
Google Scholar
Gerritsen M. E., Williams A. J., Neish A. S., Moore S., Shi Y. and Collins T. 1997 CREB-binding protein/p300 are transcriptional coactivators of p65. Proc. Natl. Acad. Sci. USA
94, 2927–2932.
CAS
PubMed
Article
Google Scholar
Glazier A. M., Nadeau J. H. and Aitman T. J. 2002 Finding genes that underlie complex traits. Science
298, 2345–2349.
CAS
PubMed
Article
Google Scholar
Goldin A., Beckman J. A., Schmidt A. M. and Creager M. A. 2006 Advanced glycation end products: sparking the development of diabetic vascular injury. Circulation
114, 597–605.
CAS
PubMed
Article
Google Scholar
Granger A., Abdullah I., Huebner F., Stout A., Wang T., Huebner T. et al. 2008 Histone deacetylase inhibition reduces myocardial ischemia-reperfusion injury in mice. FASEB J.
22, 3549–3560.
CAS
PubMed
Article
Google Scholar
Granjon A., Gustin M. P., Rieusset J., Lefai E., Meugnier E., Guller I. et al. 2009 The microRNA signature in response to insulin reveals its implication in the transcriptional action of insulin in human skeletal muscle and the role of a sterol regulatory element-binding protein-1c/myocyte enhancer factor 2C pathway. Diabetes
58, 2555–2564.
Google Scholar
Gray S. G. and De Meyts P. 2005 Role of histone and transcription factor acetylation in diabetes pathogenesis. Diabetes Metab. Res. Rev.
21, 416–433.
CAS
PubMed
Article
Google Scholar
Grayson B. L., Smith M. E., Thomas J. W., Wang L., Dexheimer P., Jeffrey J. et al. 2010 Genome-wide analysis of copy number variation in type 1 diabetes. PLoS One
5, e15393.
Google Scholar
Greenberg D. A. 1993 Linkage analysis of “necessary” disease loci versus “susceptibility” loci. Am. J. Hum. Genet.
52, 135–143.
CAS
PubMed Central
PubMed
Google Scholar
Greenberg D. A. and Abreu P. C. 2001 Determining trait locus position from multipoint analysis: accuracy and power of three different statistics. Genet. Epidemiol.
21, 299–314.
CAS
PubMed
Article
Google Scholar
Groop L., Ekstrand A., Forsblom C., Widen E., Groop P. H., Teppo A. M. et al. 1993 Insulin resistance, hypertension and microalbuminuria in patients with type 2 (non-insulin-dependent) diabetes mellitus. Diabetologia
36, 642–647.
Google Scholar
Hagiwara M., Yamagata K., Capaldi R. A. and Koyama A. 2006 Mitochondrial dysfunction in focal segmental glomerulosclerosis of puromycin aminonucleoside nephrosis. Kidney Int.
69, 1146–1152.
CAS
PubMed
Article
Google Scholar
Hahn L. W., Ritchie M. D. and Moore J. H. 2003 Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions. Bioinformatics
19, 376–382.
CAS
PubMed
Article
Google Scholar
Hallman D. M., Boerwinkle E., Gonzalez V. H., Klein B. E., Klein R. and Hanis C. L. 2007 A genome-wide linkage scan for diabetic retinopathy susceptibility genes in Mexican Americans with type 2 diabetes from Starr County, Texas. Diabetes
56, 1167–1173.
CAS
PubMed
Article
Google Scholar
Han J., Colditz G. A., Liu J. S. and Hunter D. J. 2005 Genetic variation in XPD, sun exposure, and risk of skin cancer. Cancer Epidemiol. Biomarkers Prev.
14, 1539–1544.
CAS
PubMed
Article
Google Scholar
Haumaitre C., Lenoir O. and Scharfmann R. 2008 Histone deacetylase inhibitors modify pancreatic cell fate determination and amplify endocrine progenitors. Mol. Cell Biol.
28, 6373–6383.
CAS
PubMed Central
PubMed
Article
Google Scholar
Helgadottir A., Thorleifsson G., Manolescu A., Gretarsdottir S., Blondal T., Jonasdottir A. et al. 2007 A common variant on chromosome 9p21 affects the risk of myocardial infarction. Science
316, 1491–1493.
Google Scholar
Heneghan H. M., Miller N. and Kerin M. J. 2010 Role of microRNAs in obesity and the metabolic syndrome. Obes. Rev.
11, 354–361.
CAS
PubMed
Article
Google Scholar
Herrmann S. M., Ringel J., Wang J. G., Staessen J. A. and Brand E. 2002 Peroxisome proliferator-activated receptor-gamma2 polymorphism Pro12Ala is associated with nephropathy in type 2 diabetes: the Berlin Diabetes Mellitus (BeDiaM) study. Diabetes
51, 2653–2657.
CAS
PubMed
Article
Google Scholar
Hietala K., Forsblom C., Summanen P. and Groop P. H. 2008 Heritability of proliferative diabetic retinopathy. Diabetes
57, 2176–2180.
CAS
PubMed
Article
Google Scholar
Hodge S. E. 1994 What association analysis can and cannot tell us about the genetics of complex disease? Am. J. Med. Genet.
54, 318–323.
CAS
PubMed
Article
Google Scholar
Hodge S. E., Anderson C. E., Neiswanger K., Sparkes R. S. and Rimoin D. L. 1983 The search for heterogeneity in insulin-dependent diabetes mellitus (IDDM): linkage studies, two-locus models, and genetic heterogeneity. Am. J. Hum. Genet.
35, 1139–1155.
CAS
PubMed Central
PubMed
Google Scholar
Hoerger T. J., Segel J. E., Gregg E. W. and Saaddine J. B. 2008 Is glycemic control improving in U.S. adults? Diabetes Care
31, 81–86.
PubMed
Article
Google Scholar
Hoover K. B. and Bryant P. J. 2000 The genetics of the protein 4.1 family: organizers of the membrane and cytoskeleton. Curr. Opin. Cell Biol.
12, 229–234.
CAS
PubMed
Article
Google Scholar
Hudson B. I., Stickland M. H., Futers T. S. and Grant P. J. 2001 Effects of novel polymorphisms in the RAGE gene on transcriptional regulation and their association with diabetic retinopathy. Diabetes
50, 1505–1511.
CAS
PubMed
Article
Google Scholar
Hunter D. J. 2005 Gene-environment interactions in human diseases. Nat. Rev. Genet.
6, 287–298.
CAS
PubMed
Article
Google Scholar
Hunter D. J. and Kraft P. 2007 Drinking from the fire hose–statistical issues in genomewide association studies. N. Engl. J. Med.
357, 436–439.
CAS
PubMed
Article
Google Scholar
Iacoviello L., Burzotta F., Di Castelnuovo A., Zito F., Marchioli R. and Donati M. B. 1998 The 4G/5G polymorphism of PAI-1 promoter gene and the risk of myocardial infarction: a meta-analysis. Thromb. Haemost.
80, 1029–1030.
CAS
PubMed
Google Scholar
Iacoviello L. and Donati M. B. 1998 Blood coagulation factor VII activity and the risk of myocardial infarction: the novel identification of a genetic protection that can be mimicked by an old drug. G. Ital. Cardiol.
28, 718–721.
CAS
PubMed
Google Scholar
Iafrate A. J., Feuk L., Rivera M. N., Listewnik M. L., Donahoe P. K., Qi Y. et al. 2004 Detection of large-scale variation in the human genome. Nat. Genet.
36, 949–951.
Google Scholar
Ichikawa F., Yamada K., Ishiyama-Shigemoto S., Yuan X. and Nonaka K. 1999 Association of an (A-C)n dinucleotide repeat polymorphic marker at the 5′-region of the aldose reductase gene with retinopathy but not with nephropathy or neuropathy in Japanese patients with Type 2 diabetes mellitus. Diabetes Med.
16, 744–748.
CAS
Article
Google Scholar
Ikegishi Y., Tawata M., Aida K. and Onaya T. 1999 Z-4 allele upstream of the aldose reductase gene is associated with proliferative retinopathy in Japanese patients with NIDDM, and elevated luciferase gene transcription in vitro. Life Sci.
65, 2061–2070.
CAS
PubMed
Article
Google Scholar
Imperatore G., Hanson R. L., Pettitt D. J., Kobes S., Bennett P. H. and Knowler W. C. 1998 Sib-pair linkage analysis for susceptibility genes for microvascular complications among Pima Indians with type 2 diabetes. Pima Diabetes Genes Group. Diabetes
47, 821–830.
CAS
PubMed
Article
Google Scholar
Ito K., Hanazawa T., Tomita K., Barnes P. J. and Adcock I. M. 2004 Oxidative stress reduces histone deacetylase 2 activity and enhances IL-8 gene expression: role of tyrosine nitration. Biochem. Biophys. Res. Commun.
315, 240–245.
CAS
PubMed
Article
Google Scholar
Iyengar S. K., Abboud H. E., Goddard K. A., Saad M. F., Adler S. G., Arar N. H. et al. 2007 Genome-wide scans for diabetic nephropathy and albuminuria in multiethnic populations: the family investigation of nephropathy and diabetes (FIND). Diabetes
56, 1577–1585.
Google Scholar
James R. W., Leviev I., Ruiz J., Passa P., Froguel P. and Garin M. C. 2000 Promoter polymorphism T(-107)C of the paraoxonase PON1 gene is a risk factor for coronary heart disease in type 2 diabetic patients. Diabetes
49, 1390–1393.
CAS
PubMed
Article
Google Scholar
Jarinova O., Stewart A. F., Roberts R., Wells G., Lau P., Naing T. et al. 2009 Functional analysis of the chromosome 9p21.3 coronary artery disease risk locus. Arterioscler. Thromb. Vasc. Biol.
29, 1671–1677.
Google Scholar
Jones C. A., Krolewski A. S., Rogus J., Xue J. L., Collins A. and Warram J. H. 2005 Epidemic of end-stage renal disease in people with diabetes in the United States population: do we know the cause? Kidney Int.
67, 1684–1691.
Google Scholar
Kamb A., Gruis N. A., Weaver-Feldhaus J., Liu Q., Harshman K., Tavtigian S. V. et al. 1994 A cell cycle regulator potentially involved in genesis of many tumor types. Science
264, 436–440.
CAS
PubMed
Article
Google Scholar
Kaprio J., Tuomilehto J., Koskenvuo M., Romanov K., Reunanen A., Eriksson J. et al. 1992 Concordance for type 1 (insulin-dependent) and type 2 (non-insulin-dependent) diabetes mellitus in a population-based cohort of twins in Finland. Diabetologia
35, 1060–1067.
Google Scholar
Kathiresan S., Voight B. F., Purcell S., Musunuru K., Ardissino D., Mannucci P. M. et al. 2009 Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants. Nat. Genet.
41, 334–341.
Google Scholar
Kato M., Zhang J., Wang M., Lanting L., Yuan H., Rossi J. J. et al. 2007 MicroRNA-192 in diabetic kidney glomeruli and its function in TGF-beta-induced collagen expression via inhibition of E-box repressors. Proc. Natl. Acad. Sci. USA
104, 3432–3437.
Google Scholar
Kato M., Arce L. and Natarajan R. 2009a MicroRNAs and their role in progressive kidney diseases. Clin. J. Am. Soc. Nephrol.
4, 1255–1266.
CAS
PubMed
Article
Google Scholar
Kato M., Putta S., Wang M., Yuan H., Lanting L., Nair I. et al. 2009b TGF-beta activates Akt kinase through a microRNA-dependent amplifying circuit targeting PTEN. Nat. Cell Biol.
11, 881–889.
Kaur H., Chen S., Xin X., Chiu J., Khan Z. A. and Chakrabarti S. 2006 Diabetes-induced extracellular matrix protein expression is mediated by transcription coactivator p300. Diabetes
55, 3104–3111.
CAS
PubMed
Article
Google Scholar
Kawasaki I., Tahara H., Emoto M., Shoji T. and Nishizawa Y. 2002 Relationship between TaqIB cholesteryl ester transfer protein gene polymorphism and macrovascular complications in Japanese patients with type 2 diabetes. Diabetes
51, 871–874.
CAS
PubMed
Article
Google Scholar
Kim V. N., Han J. and Siomi M. C. 2009 Biogenesis of small RNAs in animals. Nat. Rev. Mol. Cell Biol.
10, 126–139.
CAS
PubMed
Article
Google Scholar
Kimura H., Gejyo F., Suzuki Y., Suzuki S., Miyazaki R. and Arakawa M. 1998 Polymorphisms of angiotensin converting enzyme and plasminogen activator inhibitor-1 genes in diabetes and macroangiopathy1. Kidney Int.
54, 1659–1669.
CAS
PubMed
Article
Google Scholar
Kleeberger S. R. and Peden D. 2005 Gene-environment interactions in asthma and other respiratory diseases. Annu. Rev. Med.
56, 383–400.
CAS
PubMed
Article
Google Scholar
Ko B. C., Lam K. S., Wat N. M. and Chung S. S. 1995 An (A-C)n dinucleotide repeat polymorphic marker at the 5′ end of the aldose reductase gene is associated with early-onset diabetic retinopathy in NIDDM patients. Diabetes
44, 727–732.
CAS
PubMed
Article
Google Scholar
Krolewski A. S., Poznik G. D., Placha G., Canani L., Dunn J., Walker W. et al. 2006 A genome-wide linkage scan for genes controlling variation in urinary albumin excretion in type II diabetes. Kidney Int.
69, 129–136.
CAS
PubMed
Article
Google Scholar
Kumaramanickavel G., Ramprasad V. L., Sripriya S., Upadyay N. K., Paul P. G. and Sharma T. 2002 Association of Gly82Ser polymorphism in the RAGE gene with diabetic retinopathy in type II diabetic Asian Indian patients. J. Diabetes Complications
16, 391–394.
PubMed
Article
Google Scholar
Kumaramanickavel G., Sripriya S., Ramprasad V. L., Upadyay N. K., Paul P. G. and Sharma T. 2003 Z-2 aldose reductase allele and diabetic retinopathy in India. Ophthalmic Genet.
24, 41–48.
PubMed
Article
Google Scholar
Kuroda A., Rauch T. A., Todorov I., Ku H. T., Al-Abdullah I. H., Kandeel F. et al. 2009 Insulin gene expression is regulated by DNA methylation. PLoS One
4, e6953.
Google Scholar
Kurokawa R., Rosenfeld M. G. and Glass C. K. 2009 Transcriptional regulation through noncoding RNAs and epigenetic modifications. RNA Biol.
6, 233–236.
CAS
PubMed
Article
Google Scholar
Laan M. and Paabo S. 1998 Mapping genes by drift-generated linkage disequilibrium. Am. J. Hum. Genet.
63, 654–656.
CAS
PubMed Central
PubMed
Article
Google Scholar
Lam K. S., Ma O. C., Wat N. M., Chan L. C. and Janus E. D. 1999 Beta-fibrinogen gene G/A-455 polymorphism in relation to fibrinogen concentrations and ischaemic heart disease in Chinese patients with type II diabetes. Diabetologia
42, 1250–1253.
CAS
PubMed
Article
Google Scholar
Lange L. A., Bowden D. W., Langefeld C. D., Wagenknecht L. E., Carr J. J., Rich S. S. et al. 2002 Heritability of carotid artery intima-medial thickness in type 2 diabetes. Stroke
33, 1876–1881.
Google Scholar
Le Marchand L. and Wilkens L. R. 2008 Design considerations for genomic association studies: importance of gene-environment interactions. Cancer Epidemiol. Biomarkers Prev.
17, 263–267.
PubMed
Article
CAS
Google Scholar
Lee S. C., Wang Y., Ko G. T., Critchley J. A., Ng M. C., Tong P. C. et al. 2001 Association of retinopathy with a microsatellite at 5′ end of the aldose reductase gene in Chinese patients with late-onset Type 2 diabetes. Ophthalmic Genet.
22, 63–67.
CAS
PubMed
Article
Google Scholar
Leviev I., Negro F. and James R. W. 1997 Two alleles of the human paraoxonase gene produce different amounts of mRNA. An explanation for differences in serum concentrations of paraoxonase associated with the (Leu-Met54) polymorphism. Arterioscler. Thromb. Vasc. Biol.
17, 2935–2939.
CAS
PubMed
Article
Google Scholar
Li S., Chen X., Zhang H., Liang X., Xiang Y., Yu C. et al. 2009 Differential expression of microRNAs in mouse liver under aberrant energy metabolic status. J. Lipid Res.
50, 1756–1765.
Google Scholar
Li Y., Reddy M. A., Miao F., Shanmugam N., Yee J. K., Hawkins D. et al. 2008 Role of the histone H3 lysine 4 methyltransferase, SET7/9, in the regulation of NF-kappaB-dependent inflammatory genes. Relevance to diabetes and inflammation. J. Biol. Chem.
283, 26771–26781.
Google Scholar
Liang F., Kume S. and Koya D. 2009 SIRT1 and insulin resistance. Nat. Rev. Endocrinol.
5, 367–373.
CAS
PubMed
Article
Google Scholar
Lieberfarb M. E., Lin M., Lechpammer M., Li C., Tanenbaum D. M., Febbo P. G. et al. 2003 Genome-wide loss of heterozygosity analysis from laser capture microdissected prostate cancer using single nucleotide polymorphic allele (SNP) arrays and a novel bioinformatics platform dChipSNP. Cancer Res.
63, 4781–4785.
Google Scholar
Lindholm E., Bakhtadze E., Sjogren M., Cilio C. M., Agardh E., Groop L. et al. 2006 The -374 T/A polymorphism in the gene encoding RAGE is associated with diabetic nephropathy and retinopathy in type 1 diabetic patients. Diabetologia
49, 2745–2755.
Google Scholar
Ling C., Del Guerra S., Lupi R., Ronn T., Granhall C., Luthman H. et al. 2008 Epigenetic regulation of PPARGC1A in human type 2 diabetic islets and effect on insulin secretion. Diabetologia
51, 615–622.
CAS
PubMed Central
PubMed
Article
Google Scholar
Liu N., Williams A. H., Kim Y., Mcanally J., Bezprozvannaya S., Sutherland L. B. et al. 2007 An intragenic MEF2-dependent enhancer directs muscle-specific expression of microRNAs 1 and 133. Proc. Natl. Acad. Sci. USA
104, 20844–20849.
CAS
PubMed
Article
Google Scholar
Liu Z. H., Guan T. J., Chen Z. H. and Li L. S. 1999 Glucose transporter (GLUT1) allele (XbaI-) associated with nephropathy in non-insulin-dependent diabetes mellitus. Kidney Int.
55, 1843–1848.
CAS
PubMed
Article
Google Scholar
Looker H. C., Nelson R. G., Chew E., Klein R., Klein B. E., Knowler W. C. et al. 2007 Genome-wide linkage analyses to identify loci for diabetic retinopathy. Diabetes
56, 1160–1166.
Google Scholar
Lowell B. B. and Shulman G. I. 2005 Mitochondrial dysfunction and type 2 diabetes. Science
307, 384–387.
CAS
PubMed
Article
Google Scholar
Maeda M., Yamamoto I., Fukuda M., Nishida M., Fujitsu J., Nonen S. et al. 2003 MTHFR gene polymorphism as a risk factor for diabetic retinopathy in type 2 diabetic patients without serum creatinine elevation. Diabetes Care
26, 547–548.
PubMed
Article
Google Scholar
Maeda S., Araki S., Babazono T., Toyoda M., Umezono T., Kawai K. et al. 2010 Replication study for the association between four loci identified by a genome-wide association study on European American subjects with type 1 diabetes and susceptibility to diabetic nephropathy in Japanese subjects with type 2 diabetes. Diabetes
59, 2075–2079.
Google Scholar
Malecki M. T., Cyganek K., Mirkiewicz-Sieradzka B., Wolkow P. P., Wanic K., Skupien J. et al. 2008 Alanine variant of the Pro12Ala polymorphism of the PPARgamma gene might be associated with decreased risk of diabetic retinopathy in type 2 diabetes. Diabetes Res. Clin. Pract.
80, 139–145.
CAS
PubMed
Article
Google Scholar
Malhotra A. and Wolford J. K. 2005 Analysis of quantitative lipid traits in the genetics of NIDDM (GENNID) study. Diabetes
54, 3007–3014.
CAS
PubMed
Article
Google Scholar
Mansfield M. W., Stickland M. H. and Grant P. J. 1995 Plasminogen activator inhibitor-1 (PAI-1) promoter polymorphism and coronary artery disease in non-insulin-dependent diabetes. Thromb. Haemost.
74, 1032–1034.
CAS
PubMed
Google Scholar
Matsumoto A., Iwashima Y., Abiko A., Morikawa A., Sekiguchi M., Eto M. et al. 2000 Detection of the association between a deletion polymorphism in the gene encoding angiotensin I-converting enzyme and advanced diabetic retinopathy. Diabetes Res. Clin. Pract.
50, 195–202.
CAS
PubMed
Article
Google Scholar
Mcpherson R., Pertsemlidis A., Kavaslar N., Stewart A., Roberts R., Cox D. R. et al. 2007 A common allele on chromosome 9 associated with coronary heart disease. Science
316, 1488–1491.
CAS
PubMed Central
PubMed
Article
Google Scholar
Medici F., Hawa M., Ianari A., Pyke D. A. and Leslie R. D. 1999 Concordance rate for type II diabetes mellitus in monozygotic twins: actuarial analysis. Diabetologia
42, 146–150.
CAS
PubMed
Article
Google Scholar
Meguro S., Takei I., Murata M., Hirose H., Takei N., Mitsuyoshi Y. et al. 2001 Cholesteryl ester transfer protein polymorphism associated with macroangiopathy in Japanese patients with type 2 diabetes. Atherosclerosis
156, 151–156.
CAS
PubMed
Article
Google Scholar
Meigs J. B., Shrader P., Sullivan L. M., Mcateer J. B., Fox C. S., Dupuis J. et al. 2008 Genotype score in addition to common risk factors for prediction of type 2 diabetes. N. Engl. J. Med.
359, 2208–2219.
CAS
PubMed Central
PubMed
Article
Google Scholar
Melzer D., Murray A., Hurst A. J., Weedon M. N., Bandinelli S., Corsi A. M. et al. 2006 Effects of the diabetes linked TCF7L2 polymorphism in a representative older population. BMC Med.
4, 34.
PubMed Central
PubMed
Article
CAS
Google Scholar
Miao F., Gonzalo I. G., Lanting L. and Natarajan R. 2004 In vivo chromatin remodeling events leading to inflammatory gene transcription under diabetic conditions. J. Biol. Chem.
279, 18091–18097.
CAS
PubMed
Article
Google Scholar
Miao F., Wu X., Zhang L., Yuan Y. C., Riggs A. D. and Natarajan R. 2007 Genome-wide analysis of histone lysine methylation variations caused by diabetic conditions in human monocytes. J. Biol. Chem.
282, 13854–13863.
CAS
PubMed
Article
Google Scholar
Miao F., Smith D. D., Zhang L., Min A., Feng W. and Natarajan R. 2008a Lymphocytes from patients with type 1 diabetes display a distinct profile of chromatin histone H3 lysine 9 dimethylation: an epigenetic study in diabetes. Diabetes
57, 3189–3198.
CAS
PubMed
Article
Google Scholar
Miao F., Wu X., Zhang L., Riggs A. D. and Natarajan R. 2008b Histone methylation patterns are cell-type specific in human monocytes and lymphocytes and well maintained at core genes. J. Immunol.
180, 2264–2269.
CAS
PubMed Central
PubMed
Google Scholar
Moczulski D. K., Rogus J. J., Antonellis A., Warram J. H. and Krolewski A. S. 1998 Major susceptibility locus for nephropathy in type 1 diabetes on chromosome 3q: results of novel discordant sib-pair analysis. Diabetes
47, 1164–1169.
CAS
PubMed
Article
Google Scholar
Moore J. H., Gilbert J. C., Tsai C. T., Chiang F. T., Holden T., Barney N. et al. 2006 A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility. J. Theor. Biol.
241, 252–261.
PubMed
Article
Google Scholar
Muhonen P. and Holthofer H. 2009 Epigenetic and microRNA-mediated regulation in diabetes. Nephrol. Dial. Transplant
24, 1088–1096.
CAS
PubMed
Article
Google Scholar
Mutskov V., Raaka B. M., Felsenfeld G. and Gershengorn M. C. 2007 The human insulin gene displays transcriptionally active epigenetic marks in islet-derived mesenchymal precursor cells in the absence of insulin expression. Stem Cells
25, 3223–3233.
CAS
PubMed
Article
Google Scholar
Nagi D. K., Mccormack L. J., Mohamed-Ali V., Yudkin J. S., Knowler W. C. and Grant P. J. 1997 Diabetic retinopathy, promoter (4G/5G) polymorphism of PAI-1 gene, and PAI-1 activity in Pima Indians with type 2 diabetes. Diabetes Care
20, 1304–1309.
CAS
PubMed
Article
Google Scholar
Natarajan R., Gonzales N., Xu L. and Nadler J. L. 1992 Vascular smooth muscle cells exhibit increased growth in response to elevated glucose. Biochem. Biophys. Res. Commun.
187, 552–560.
CAS
PubMed
Article
Google Scholar
Newman B., Selby J. V., King M. C., Slemenda C., Fabsitz R. and Friedman G. D. 1987 Concordance for type 2 (non-insulin-dependent) diabetes mellitus in male twins. Diabetologia
30, 763–768.
CAS
PubMed
Article
Google Scholar
Ng D. P., Tai B. C., Koh D., Tan K. W. and Chia K. S. 2005 Angiotensin-I converting enzyme insertion/deletion polymorphism and its association with diabetic nephropathy: a meta-analysis of studies reported between 1994 and 2004 and comprising 14,727 subjects. Diabetologia
48, 1008–1016.
CAS
PubMed
Article
Google Scholar
Ng S. B., Turner E. H., Robertson P. D., Flygare S. D., Bigham A. W., Lee C. et al. 2009 Targeted capture and massively parallel sequencing of 12 human exomes. Nature
461, 272–276.
CAS
PubMed Central
PubMed
Article
Google Scholar
Ng S. B., Buckingham K. J., Lee C., Bigham A. W., Tabor H. K., Dent K. M. et al. 2010 Exome sequencing identifies the cause of a mendelian disorder. Nat. Genet.
42, 30–35.
CAS
PubMed Central
PubMed
Article
Google Scholar
Noh H., Oh E. Y., Seo J. Y., Yu M. R., Kim Y. O., Ha H. et al. 2009 Histone deacetylase-2 is a key regulator of diabetes- and transforming growth factor-beta1-induced renal injury. Am. J. Physiol. Renal Physiol.
297, F729–F739.
Google Scholar
Novelli G., Predazzi I. M., Mango R., Romeo F. and Mehta J. L. 2010 Role of genomics in cardiovascular medicine. World J. Cardiol.
2, 428–436.
PubMed Central
PubMed
Article
Google Scholar
O’rahilly S., Barroso I. and Wareham N. J. 2005 Genetic factors in type 2 diabetes: the end of the beginning? Science
307, 370–373.
PubMed
Article
CAS
Google Scholar
Odawara M., Tachi Y. and Yamashita K. 1997 Paraoxonase polymorphism (Gln192-Arg) is associated with coronary heart disease in Japanese noninsulin-dependent diabetes mellitus. J. Clin. Endocrinol. Metab.
82, 2257–2260.
CAS
PubMed
Google Scholar
Ogura Y., Bonen D. K., Inohara N., Nicolae D. L., Chen F. F., Ramos R. et al. 2001 A frameshift mutation in NOD2 associated with susceptibility to Crohn’s disease. Nature
411, 603–606.
CAS
PubMed
Article
Google Scholar
Olmos P., Futers S., Acosta A. M., Siegel S., Maiz A., Schiaffino R. et al. 2000 (AC)23 [Z-2] polymorphism of the aldose reductase gene and fast progression of retinopathy in Chilean type 2 diabetics. Diabetes Res. Clin. Pract.
47, 169–176.
CAS
PubMed
Article
Google Scholar
Osei-Hyiaman D., Hou L., Mengbai F., Zhiyin R., Zhiming Z. and Kano K. 2001 Coronary artery disease risk in Chinese type 2 diabetics: is there a role for paraxonase 1 gene (Q192R) polymorphism? Eur. J. Endocrinol.
144, 639–644.
CAS
PubMed
Article
Google Scholar
Park H. K., Ahn C. W., Lee G. T., Kim S. J., Song Y. D., Lim S. K. et al. 2002 (AC)(n) polymorphism of aldose reductase gene and diabetic microvascular complications in type 2 diabetes mellitus. Diabetes Res. Clin. Pract.
55, 151–157.
CAS
PubMed
Article
Google Scholar
Perassolo M. S., Almeida J. C., Pra R. L., Mello V. D., Maia A. L., Moulin C. C. et al. 2003 Fatty acid composition of serum lipid fractions in type 2 diabetic patients with microalbuminuria. Diabetes Care
26, 613–618.
CAS
PubMed
Article
Google Scholar
Pezzolesi M. G., Poznik G. D., Mychaleckyj J. C., Paterson A. D., Barati M. T., Klein J. B. et al. 2009 Genome-wide association scan for diabetic nephropathy susceptibility genes in type 1 diabetes. Diabetes
58, 1403–1410.
Google Scholar
Pfohl M., Koch M., Enderle M. D., Kuhn R., Fullhase J., Karsch K. R. et al. 1999 Paraoxonase 192 Gln/Arg gene polymorphism, coronary artery disease, and myocardial infarction in type 2 diabetes. Diabetes
48, 623–627.
Google Scholar
Pizzuti A., Frittitta L., Argiolas A., Baratta R., Goldfine I. D., Bozzali M. et al. 1999 A polymorphism (K121Q) of the human glycoprotein PC-1 gene coding region is strongly associated with insulin resistance. Diabetes
48, 1881–1884.
Google Scholar
Poy M. N., Eliasson L., Krutzfeldt J., Kuwajima S., Ma X., Macdonald P. E. et al. 2004 A pancreatic islet-specific microRNA regulates insulin secretion. Nature
432, 226–230.
Google Scholar
Poy M. N., Spranger M. and Stoffel M. 2007 microRNAs and the regulation of glucose and lipid metabolism. Diabetes Obes. Metab.
9(suppl. 2), 67–73.
CAS
PubMed
Article
Google Scholar
Quinn M., Angelico M. C., Warram J. H. and Krolewski A. S. 1996 Familial factors determine the development of diabetic nephropathy in patients with IDDM. Diabetologia
39, 940–945.
CAS
PubMed
Article
Google Scholar
Ramprasad S., Radha V., Mathias R. A., Majumder P. P., Rao M. R. and Rema M. 2007 Rage gene promoter polymorphisms and diabetic retinopathy in a clinic-based population from South India. Eye (London)
21, 395–401.
CAS
Article
Google Scholar
Ray D., Mishra M., Ralph S., Read I., Davies R. and Brenchley P. 2004 Association of the VEGF gene with proliferative diabetic retinopathy but not proteinuria in diabetes. Diabetes
53, 861–864.
CAS
PubMed
Article
Google Scholar
Reddy M. A., Sahar S., Villeneuve L. M., Lanting L. and Natarajan R. 2009 Role of Src tyrosine kinase in the atherogenic effects of the 12/15-lipoxygenase pathway in vascular smooth muscle cells. Arterioscler. Thromb. Vasc. Biol.
29, 387–393.
CAS
PubMed Central
PubMed
Article
Google Scholar
Redon R., Ishikawa S., Fitch K. R., Feuk L., Perry G. H., Andrews T. D. et al. 2006 Global variation in copy number in the human genome. Nature
444, 444–454.
CAS
PubMed Central
PubMed
Article
Google Scholar
Rema M., Premkumar S., Anitha B., Deepa R., Pradeepa R. and Mohan V. 2005 Prevalence of diabetic retinopathy in urban India: the Chennai Urban Rural Epidemiology Study (CURES) eye study, I. Invest. Ophthalmol. Vis. Sci.
46, 2328–2333.
PubMed
Article
Google Scholar
Remmers E. F., Griffiths M. M., Longman R. E., Gulko P. S., Kawahito Y., Chen S. et al. 1999 An integrated rat genetic map: analysis of linkage conservation with the mouse and human maps. Transplant Proc.
31, 1549–1554.
Google Scholar
Riad A., Zhuo J. L., Schultheiss H. P. and Tschope C. 2007 The role of the renal kallikrein-kinin system in diabetic nephropathy. Curr. Opin. Nephrol. Hypertens.
16, 22–26.
CAS
PubMed Central
PubMed
Article
Google Scholar
Richeti F., Noronha R. M., Waetge R. T., De Vasconcellos J. P., De Souza O. F., Kneipp B. et al. 2007 Evaluation of AC(n) and C(-106)T polymorphisms of the aldose reductase gene in Brazilian patients with DM1 and susceptibility to diabetic retinopathy. Mol. Vis.
13, 740–745.
CAS
PubMed
Google Scholar
Risch N. 1990 Linkage strategies for genetically complex traits. II. The power of affected relative pairs. Am. J. Hum. Genet.
46, 229–241.
CAS
PubMed Central
PubMed
Google Scholar
Risch N. and Merikangas K. 1996 The future of genetic studies of complex human diseases. Science
273, 1516–1517.
CAS
PubMed
Article
Google Scholar
Ritchie M. D., Hahn L. W., Roodi N., Bailey L. R., Dupont W. D., Parl F. F. et al. 2001 Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am. J. Hum. Genet.
69, 138–147.
CAS
PubMed Central
PubMed
Article
Google Scholar
Robison Jr W. G., Nagata M., Laver N., Hohman T. C. and Kinoshita J. H. 1989 Diabetic-like retinopathy in rats prevented with an aldose reductase inhibitor. Invest. Ophthalmol. Vis. Sci.
30, 2285–2292.
PubMed
Google Scholar
Rogus J. J., Poznik G. D., Pezzolesi M. G., Smiles A. M., Dunn J., Walker W. et al. 2008 High-density single nucleotide polymorphism genome-wide linkage scan for susceptibility genes for diabetic nephropathy in type 1 diabetes: discordant sibpair approach. Diabetes
57, 2519–2526.
CAS
PubMed
Article
Google Scholar
Rosen P., Nawroth P. P., King G., Moller W., Tritschler H. J. and Packer L. 2001 The role of oxidative stress in the onset and progression of diabetes and its complications: a summary of a Congress Series sponsored by UNESCO-MCBN, the American Diabetes Association and the German Diabetes Society. Diabetes Metab. Res. Rev.
17, 189–212.
CAS
PubMed
Article
Google Scholar
Rotig A., Bessis J. L., Romero N., Cormier V., Saudubray J. M., Narcy P. et al. 1992 Maternally inherited duplication of the mitochondrial genome in a syndrome of proximal tubulopathy, diabetes mellitus, and cerebellar ataxia. Am. J. Hum. Genet.
50, 364–370.
CAS
PubMed Central
PubMed
Google Scholar
Ruiz J., Blanche H., James R. W., Garin M. C., Vaisse C., Charpentier G. et al. 1995 Gln-Arg192 polymorphism of paraoxonase and coronary heart disease in type 2 diabetes. Lancet
346, 869–872.
CAS
PubMed
Article
Google Scholar
Rutter M., Moffitt T. E. and Caspi A. 2006 Gene-environment interplay and psychopathology: multiple varieties but real effects. J. Child Psychol. Psychiat.
47, 226–261.
PubMed
Article
Google Scholar
Sakai T., Matsuura B. and Onji M. 1998 Serum paraoxonase activity and genotype distribution in Japanese patients with diabetes mellitus. Intern. Med.
37, 581–584.
CAS
PubMed
Article
Google Scholar
Samani N. J., Erdmann J., Hall A. S., Hengstenberg C., Mangino M., Mayer B. et al. 2007 Genomewide association analysis of coronary artery disease. N. Engl. J. Med.
357, 443–453.
Google Scholar
Santos K. G., Tschiedel B., Schneider J., Souto K. and Roisenberg I. 2003 Diabetic retinopathy in Euro-Brazilian type 2 diabetic patients: relationship with polymorphisms in the aldose reductase, the plasminogen activator inhibitor-1 and the methylenetetrahydrofolate reductase genes. Diabetes Res. Clin. Pract.
61, 133–136.
CAS
PubMed
Article
Google Scholar
Santos K. G., Canani L. H., Gross J. L., Tschiedel B., Souto K. E. and Roisenberg I. 2005 Relationship of p22phox C242T polymorphism with nephropathy in type 2 diabetic patients. J. Nephrol.
18, 733–738.
CAS
PubMed
Google Scholar
Sayer A. A., Dennison E. M., Syddall H. E., Gilbody H. J., Phillips D. I. and Cooper C. 2005 Type 2 diabetes, muscle strength, and impaired physical function: the tip of the iceberg? Diabetes Care
28, 2541–2542.
Google Scholar
Sayyed S. G., Gaikwad A. B., Lichtnekert J., Kulkarni O., Eulberg D., Klussmann S. et al. 2010 Progressive glomerulosclerosis in type 2 diabetes is associated with renal histone H3K9 and H3K23 acetylation, H3K4 dimethylation and phosphorylation at serine 10. Nephrol. Dial. Transplant
25, 1811–1817.
Google Scholar
Scott L. J., Mohlke K. L., Bonnycastle L. L., Willer C. J., Li Y., Duren W. L. et al. 2007 A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants. Science
316, 1341–1345.
Google Scholar
Sebat J., Lakshmi B., Troge J., Alexander J., Young J., Lundin P. et al. 2004 Large-scale copy number polymorphism in the human genome. Science
305, 525–528.
CAS
PubMed
Article
Google Scholar
Semenkovich C. F. and Heinecke J. W. 1997 The mystery of diabetes and atherosclerosis: time for a new plot. Diabetes
46, 327–334.
CAS
PubMed
Article
Google Scholar
Shan Z. X., Lin Q. X., Deng C. Y., Zhu J. N., Mai L. P., Liu J. L. et al. 2010 miR-1/miR-206 regulate Hsp60 expression contributing to glucose-mediated apoptosis in cardiomyocytes. FEBS Lett.
584, 3592–3600.
CAS
PubMed
Article
Google Scholar
Sharma S., Kelly T. K. and Jones P. A. 2010 Epigenetics in cancer. Carcinogenesis
31, 27–36.
CAS
PubMed
Article
Google Scholar
Sladek R., Rocheleau G., Rung J., Dina C., Shen L., Serre D. et al. 2007 A genome-wide association study identifies novel risk loci for type 2 diabetes. Nature
445, 881–885.
CAS
PubMed
Article
Google Scholar
Stefanski A., Majkowska L., Ciechanowicz A., Frankow M., Safranow K., Parczewski M. et al. 2006 Lack of association between the Pro12Ala polymorphism in PPAR-gamma2 gene and body weight changes, insulin resistance and chronic diabetic complications in obese patients with type 2 diabetes. Arch. Med. Res.
37, 736–743.
CAS
PubMed
Article
Google Scholar
Stitt A. W. 2003 The role of advanced glycation in the pathogenesis of diabetic retinopathy. Exp. Mol. Pathol.
75, 95–108.
CAS
PubMed
Article
Google Scholar
Suganthalakshmi B., Anand R., Kim R., Mahalakshmi R., Karthikprakash S., Namperumalsamy P. et al. 2006 Association of VEGF and eNOS gene polymorphisms in type 2 diabetic retinopathy. Mol. Vis.
12, 336–341.
CAS
PubMed
Google Scholar
Sydorova M. and Lee M. S. 2005 Vascular endothelial growth factor levels in vitreous and serum of patients with either proliferative diabetic retinopathy or proliferative vitreoretinopathy. Ophthalmic Res.
37, 188–190.
CAS
PubMed
Article
Google Scholar
Szaflik J. P., Wysocki T., Kowalski M., Majsterek I., Borucka A. I., Blasiak J. et al. 2008 An association between vascular endothelial growth factor gene promoter polymorphisms and diabetic retinopathy. Graefes Arch. Clin. Exp. Ophthalmol.
246, 39–43.
CAS
PubMed
Article
Google Scholar
Szyf M. 2009 Epigenetics, DNA methylation, and chromatin modifying drugs. Annu. Rev. Pharmacol. Toxicol.
49, 243–263.
CAS
PubMed
Article
Google Scholar
Tanaka N., Babazono T., Saito S., Sekine A., Tsunoda T., Haneda M. et al. 2003 Association of solute carrier family 12 (sodium/chloride) member 3 with diabetic nephropathy, identified by genome-wide analyses of single nucleotide polymorphisms. Diabetes
52, 2848–2853.
Google Scholar
Tang Z. H., Xiao P., Lei S. F., Deng F. Y., Zhao L. J., Deng H. Y. et al. 2007 A bivariate whole-genome linkage scan suggests several shared genomic regions for obesity and osteoporosis. J. Clin. Endocrinol. Metab.
92, 2751–2757.
Google Scholar
Terwilliger J. D., Zollner S., Laan M. and Paabo S. 1998 Mapping genes through the use of linkage disequilibrium generated by genetic drift: ’drift mapping’ in small populations with no demographic expansion. Hum. Hered.
48, 138–154.
CAS
PubMed
Article
Google Scholar
The International HapMap Consortium 2005 A haplotype map of the human genome. Nature
437, 1299–1320.
Google Scholar
Thomas D. C., Witte J. S. and Greenland S. 2007 Dissecting effects of complex mixtures: who’s afraid of informative priors? Epidemiology
18, 186–190.
PubMed
Article
Google Scholar
Town M., Jean G., Cherqui S., Attard M., Forestier L., Whitmore S. A. et al. 1998 A novel gene encoding an integral membrane protein is mutated in nephropathic cystinosis. Nat. Genet.
18, 319–324.
CAS
PubMed
Article
Google Scholar
Uhlmann K., Kovacs P., Boettcher Y., Hammes H. P. and Paschke R. 2006 Genetics of diabetic retinopathy. Exp. Clin. Endocrinol. Diabetes
114, 275–294.
CAS
PubMed
Article
Google Scholar
Ukkola O., Savolainen M. J., Salmela P. I., Von Dickhoff K. and Kesaniemi Y. A. 1994 DNA polymorphisms at the locus for human cholesteryl ester transfer protein (CETP) are associated with macro- and micro-angiopathy in non-insulin-dependent diabetes mellitus. Clin. Genet.
46, 217–227.
CAS
PubMed
Article
Google Scholar
Ukkola O., Savolainen M. J., Salmela P. I., Von Dickhoff K. and Kesaniemi Y. A. 1995 DNA polymorphisms at the lipoprotein lipase gene are associated with macroangiopathy in type 2 (non-insulin-dependent) diabetes mellitus. Atherosclerosis
115, 99–105.
CAS
PubMed
Article
Google Scholar
Uthra S., Raman R., Mukesh B. N., Rajkumar S. A., Padmaja K. R., Paul P. G. et al. 2008 Association of VEGF gene polymorphisms with diabetic retinopathy in a south Indian cohort. Ophthalmic Genet.
29, 11–15.
CAS
PubMed
Article
Google Scholar
Vanden Berghe W., De Bosscher K., Boone E., Plaisance S. and Haegeman G. 1999 The nuclear factor-kappaB engages CBP/p300 and histone acetyltransferase activity for transcriptional activation of the interleukin-6 gene promoter. J. Biol. Chem.
274, 32091–32098.
CAS
PubMed
Article
Google Scholar
Vardarli I., Baier L. J., Hanson R. L., Akkoyun I., Fischer C., Rohmeiss P. et al. 2002 Gene for susceptibility to diabetic nephropathy in type 2 diabetes maps to 18q22.3-23. Kidney Int.
62, 2176–2183.
Google Scholar
Vinciguerra M., Carrozzino F., Peyrou M., Carlone S., Montesano R., Benelli R. et al. 2009 Unsaturated fatty acids promote hepatoma proliferation and progression through downregulation of the tumor suppressor PTEN. J. Hepatol.
50, 1132–1141.
CAS
PubMed
Article
Google Scholar
Visel A., Zhu Y., May D., Afzal V., Gong E., Attanasio C. et al. 2010 Targeted deletion of the 9p21 non-coding coronary artery disease risk interval in mice. Nature
464, 409–412.
CAS
PubMed Central
PubMed
Article
Google Scholar
Volkmar M., Dedeurwaerder S., Cunha D. A., Ndlovu M. N., Defrance M., Deplus R. et al. 2012 DNA methylation profiling identifies epigenetic dysregulation in pancreatic islets from type 2 diabetic patients. EMBO J.
31, 1405–1426.
CAS
PubMed
Article
Google Scholar
Wagenknecht L. E., Bowden D. W., Carr J. J., Langefeld C. D., Freedman B. I. and Rich S. S. 2001 Familial aggregation of coronary artery calcium in families with type 2 diabetes. Diabetes
50, 861–866.
CAS
PubMed
Article
Google Scholar
Wang Q., Wang Y., Minto A. W., Wang J., Shi Q., Li X. et al. 2008 MicroRNA-377 is up-regulated and can lead to increased fibronectin production in diabetic nephropathy. FASEB J.
22, 4126–4135.
CAS
PubMed
Article
Google Scholar
Wang Y., Ng M. C., Lee S. C., So W. Y., Tong P. C., Cockram C. S. et al. 2003 Phenotypic heterogeneity and associations of two aldose reductase gene polymorphisms with nephropathy and retinopathy in type 2 diabetes. Diabetes Care
26, 2410–2415.
Google Scholar
Weber J. L. 1990 Human DNA polymorphisms and methods of analysis. Curr. Opin. Biotechnol.
1, 166–171.
CAS
PubMed
Article
Google Scholar
Wellcome Trust Case Control Consortium 2007 Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature
447, 661–678.
Google Scholar
Wild S., Roglic G., Green A., Sicree R. and King H. 2004 Global prevalence of diabetes: estimates for the year 2000 and projections for 2030. Diabetes Care
27, 1047–1053.
PubMed
Article
Google Scholar
Xiao J., Luo X., Lin H., Zhang Y., Lu Y., Wang N. et al. 2007 MicroRNA miR-133 represses HERG K+ channel expression contributing to QT prolongation in diabetic hearts. J. Biol. Chem.
282, 12363–12367.
Google Scholar
Xu B., Chiu J., Feng B., Chen S. and Chakrabarti S. 2008 PARP activation and the alteration of vasoactive factors and extracellular matrix protein in retina and kidney in diabetes. Diabetes Metab. Res. Rev.
24, 404–412.
CAS
PubMed
Article
Google Scholar
Yip J., Mattock M. B., Morocutti A., Sethi M., Trevisan R. and Viberti G. 1993 Insulin resistance in insulin-dependent diabetic patients with microalbuminuria. Lancet
342, 883–887.
CAS
PubMed
Article
Google Scholar
Yoshikawa M., Hishikawa K., Marumo T. and Fujita T. 2007 Inhibition of histone deacetylase activity suppresses epithelial-to-mesenchymal transition induced by TGF-beta1 in human renal epithelial cells. J. Am. Soc. Nephrol.
18, 58–65.
CAS
PubMed
Article
Google Scholar
Zampetaki A., Kiechl S., Drozdov I., Willeit P., Mayr U., Prokopi M. et al. 2010 Plasma microRNA profiling reveals loss of endothelial miR-126 and other microRNAs in type 2 diabetes. Circ. Res.
107, 810–817.
CAS
PubMed
Article
Google Scholar
Zhang D., Li S., Cruz P. and Kone B. C. 2009 Sirtuin 1 functionally and physically interacts with disruptor of telomeric silencing-1 to regulate alpha-ENaC transcription in collecting duct. J. Biol. Chem.
284, 20917–20926.
CAS
PubMed
Article
Google Scholar
Zhang W., Xia X., Reisenauer M. R., Hemenway C. S. and Kone B. C. 2006 Dot1a-AF9 complex mediates histone H3 Lys-79 hypermethylation and repression of ENaCalpha in an aldosterone-sensitive manner. J. Biol. Chem.
281, 18059–18068.
CAS
PubMed Central
PubMed
Article
Google Scholar
Zhang W., Xia X., Reisenauer M. R., Rieg T., Lang F., Kuhl D. et al. 2007 Aldosterone-induced Sgk1 relieves Dot1a-Af9-mediated transcriptional repression of epithelial Na+ channel alpha. J. Clin. Invest.
117, 773–783.
CAS
PubMed Central
PubMed
Article
Google Scholar
Zhao J., Jin L. and Xiong M. 2006 Nonlinear tests for genomewide association studies. Genetics
174, 1529–1538.
PubMed
Article
Google Scholar
Zhao X., Weir B. A., Laframboise T., Lin M., Beroukhim R., Garraway L. et al. 2005 Homozygous deletions and chromosome amplifications in human lung carcinomas revealed by single nucleotide polymorphism array analysis. Cancer Res.
65, 5561–5570.
CAS
PubMed
Article
Google Scholar
Zhao Y., Ransom J. F., Li A., Vedantham V., Von Drehle M., Muth A. N. et al. 2007 Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2. Cell
129, 303–317.
CAS
PubMed
Article
Google Scholar