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Diversity in Indian barley (Hordeum vulgare) cultivars and identification of genotype-specific fingerprints using microsatellite markers

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References

  • Baek H. J., Beharav A. and Nevo E. 2003 Ecological-genomic diversity of microsatellites in wild barley, Hordeum spontaneum, population in Jordan. Theor. Appl. Genet. 106, 397–410.

    CAS  PubMed  Google Scholar 

  • Becker J. and Heun M. 1995 Barley microsatellites: allele variation and mapping. Plant Mol. Biol. 27, 835–845.

    Article  CAS  PubMed  Google Scholar 

  • Bowers J. E., Dangal G. S., Vignani R. and Meredith C. P. 1996 Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). Genome 39, 628–633.

    Article  CAS  PubMed  Google Scholar 

  • Davila J. A., Loarce Y., Ramsay L., Waugh R. and Ferrer E. 1999 Comparison of RAMP and SSR markers for the study of wild barley genetic diversity. Hereditas 131, 5–13.

    Article  CAS  PubMed  Google Scholar 

  • Ivandic V. C., Hackett A., Nevo E., Keith R., Thomas W. T. B. and Forster B. P. 2002 Analysis of simple sequence repeat (SSRs) in wild barley from the fertile crescent: associations with ecology, geography and flowering time. Plant Mol. Biol. 48, 511–527.

    Article  CAS  PubMed  Google Scholar 

  • Koebner R. M., Donini P., Reeves J. C., Cooke R. J. and Law J. R. 2003 Temporal flux in the morphological and molecular diversity of UK barley. Theor. Appl. Genet. 106, 550–558.

    CAS  PubMed  Google Scholar 

  • Maestri E., Malcevschi A., Massari A. and Marmiloni N. 2002 Genomic analysis of cultivated barley (Hordeum vulgare) using sequence tags molecular markers. Estimates of divergence based on RFLP and PCR markers derived from stress-responsive genes, and simple sequence repeats (SSRs). Mol. Genet. Genomics 267, 186–201.

    Article  CAS  PubMed  Google Scholar 

  • Matus I. A. and Hayes P. M. 2002 Genetic diversity in three groups of barley germplasm assessed by simple sequence repeats. Genome 45, 1095–1106.

    Article  CAS  PubMed  Google Scholar 

  • Malysheva-Otto L. V., Ganal M.W. and Roder M. S. 2006 Analysis of molecular diversity, population structure and linkage disequilibrium in a worldwide survey of cultivated barley germplasm (Hordeum vulgare L). BMC Genet. 7, 6.

    Article  PubMed  PubMed Central  Google Scholar 

  • Petersen L., Ostergard H. and Giese H. 1994 Genetic diversity among wild and cultivated barley as revealed by RFLP. Theor. Appl. Genet. 89, 676–681.

    Article  CAS  PubMed  Google Scholar 

  • Pillen K., Binder A., Kreuzkam B., Ramsay L., Waugh R., Forster J. and Leon J. 2000 Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars. Theor. Appl. Genet. 101, 652–660.

    Article  CAS  Google Scholar 

  • Powell W., Mrggante M. Andre C., Hanefey M., Vogel J., Tingey S. and Rafalski A. 1996 The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) marker for germplasm analysis. Mol. Breed. 2, 225–238.

    Article  CAS  Google Scholar 

  • Rohlf F. J. 1992 NTSYS-PC: Numerical taxonomy and multivariate analysis system. Exeter Software, New York, USA.

    Google Scholar 

  • Russel J., Fuller J., Young G., Thomas B., Taramino G., Macaulay M., Waugh R. and Powell 1997 Discriminating between barley genotypes using microsatellite markers. Genome 40, 442–450.

    Article  Google Scholar 

  • Saghai-Maroof M. A., Soliman K. M., Jorgensen R. A. and Allard R.W. 1984 Ribosomal DNA spacer length polymorphism in barley: Mendelian inheritance, chromosomal location and population dynamics. Proc. Natl. Acad. Sci. USA 81, 8014–8019.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Saghai-Maroof M. A., Biyashev R. M., Yang G. P., Zhang Q. and Allard R. W. 1994 Extraordinarily polymorphic microsatellite DNA in barley: species diversity, chromosomal location and population dynamics. Proc. Natl. Acad. Sci. USA 91, 5466–5470.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Senior M. L., Murphy J. P., Goodman M. M. and Stuber C.W. 1998 Utility of SSRs for detrmining genetic similarities and relationships in maize using an agrose gel system. Crop Sci. 40, 226–232.

    Google Scholar 

  • Struss D. and Plieske J. 1998 The use of microsatellite markers for detection of genetic diversity in barley populations. Theor. Appl. Genet. 97, 308–315.

    Article  CAS  Google Scholar 

  • Tautz D. and Renz M. 1984 Simple sequence are ubiquitous repetitive components of eukaryote genomes. Nucleic Acids Res. 12, 4127–4137.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Varshney R. K., Marcel T. C., Ramsay L., Russel J., Roder M. S., Stien N. et al. 2007 A high density barley microsatellite consensus map with 775 SSR loci. Theor. Appl. Genet. 114, 1091–1103.

    Article  CAS  PubMed  Google Scholar 

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Author notes

  1. Shree P. Pandey

    Present address: Department of Biology, Massachussetts Institute of Technology, 77 Massachusetts Avenue 68-659, Cambridge, 02139, USA

  2. Arun K. Joshi

    Present address: CIMMYT-South Asia, Post Box 5186, Singha Durbar Marg, Kathmandu, Nepal

Authors and Affiliations

  1. Department of Genetics and Plant Breeding, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, 221 005, India

    S. K. Jaiswal, Shree P. Pandey, S. Sharma, R. Prasad, L. C. Prasad & Arun K. Joshi

  2. Directorate of Wheat Research (DWR), Karnal, 132 001, India

    R. P. S. Verma

Authors
  1. S. K. Jaiswal
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  2. Shree P. Pandey
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  3. S. Sharma
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  4. R. Prasad
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  5. L. C. Prasad
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  6. R. P. S. Verma
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  7. Arun K. Joshi
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Corresponding author

Correspondence to Arun K. Joshi.

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Jaiswal, S.K., Pandey, S.P., Sharma, S. et al. Diversity in Indian barley (Hordeum vulgare) cultivars and identification of genotype-specific fingerprints using microsatellite markers. J Genet 92 (Suppl 1), 46–54 (2013). https://doi.org/10.1007/s12041-011-0009-6

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  • DOI: https://doi.org/10.1007/s12041-011-0009-6

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