References
Atlung T, Nielsen HV and Hansen FG 2002 Characterization of the allelic variation in the rpoS gene in thirteen K12 and six other non-pathogenic Escherichia coli strains. Mol. Genet. Genomics 266 873–881
Barth M, Marschall C, Muffler A, Fischer D and Hengge-Aronis R 1995 Role for the histone-like protein H-NS in growth phase-dependent and osmotic regulation of σS and many σS-dependent genes in Escherichia coli. J. Bacteriol. 177 3455–3464
Brown EW, LeClerc JE, Li B, Payne WL and Cebula TA 2001 Phylogenetic evidence for horizontal transfer of mutS alleles among naturally occurring Escherichia coli strains. J. Bacteriol. 183 1631–1644
Daegelen P, Studier FW, Lenski RE, Cure S and Kim JF 2009 Tracing ancestors and relatives of Escherichia coli B, and the derivation of B strains REL606 and BL21(DE3). J. Mol. Biol. 394 634–643
Dowell RD, Ryan O, Jansen A, Cheung D, Agarwala S, et al. 2010 Genotype to phenotype: a complex problem. Science 328 469–469
Durfee T, Nelson R, Baldwin S, Plunkett G, Burland V, et al. 2008 The Complete genome sequence of Escherichia coli DH10B: Insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597–2606
Gu Z, David L, Petrov D, Jones T, Davis RW and Steinmetz LM 2005 Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 102 1092–1097
Hanahan D, Jessee J and Bloom FR 1991 Plasmid transformation of Escherichia coli and other bacteria. Method Enzymol. 204 63–113
Hayashi K, Morooka N, Yamamoto Y, Fujita K, Isono K, et al. 2006 Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2 1–5
Jeong H, Barbe V, Lee CH, Vallenet D, Yu DS, et al. 2009 Genome sequences of Escherichia coli B strains REL606 and BL21(DE3). J. Mol. Biol. 394 644–652
King T, Seeto S and Ferenci T 2006 Genotype-by-environment interactions influencing the emergence of rpoS mutations in Escherichia coli populations. Genetics 172 2071–2079
Martinez-Garcia E, Tormo A and Navarro-Llorens JM 2003 Polymorphism in the yclC-rpoS region of enterobacteria. Curr. Microbiol. 46 365–370
Sarubbi E, Rudd KE, Xiao H, Ikehara K, Kalman M and Cashel M 1989 Characterization of the spoT gene of Escherichia coli. J. Biol. Chem. 264 15074–15082
Spira B, Hu X and Ferenci T 2008 Strain variation in ppGpp concentration and RpoS levels in laboratory strains of Escherichia coli K-12. Microbiology 154 2887–2895
Stoebel DM, Hokamp K, Last MS and Dorman CJ 2009 Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS. PLoS Genet. 5 e1000671
Studier FW, Daegelen P, Lenski RE, Maslov S and Kim JF 2009 Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes. J. Mol. Biol. 394 653–680
Teng X, Dayhoff-Brannigan M, Cheng W-C, Gilbert CE, Sing C, et al. 2013 Genome-wide consequences of deleting any single gene. Mol Cell. 52 485–494
Xia X-X, Qian Z-G and Lee SY 2011 Comparative proteomic and genetic analyses reveal unidentified mutations in Escherichia coli XL1-Blue and DH5a. FEMS Microbiol. Lett. 314 119–124
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I thank S Mahadevan and the two anonymous referees for their critical comments on the draft.
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Chib, S. Continuous evolution of laboratory strains of bacteria and yeast. J Biosci 39, 605–607 (2014). https://doi.org/10.1007/s12038-014-9441-0
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DOI: https://doi.org/10.1007/s12038-014-9441-0