Abstract
Transcription factor ETS2 regulates genes involved in development, differentiation, angiogenesis, proliferation, and apoptosis. In addition, it is one of the core reprogramming factors responsible for the generation of human cardiomyocytes from adult somatic cells. In this study, we report the heterologous expression of human ETS2 in E. coli to produce a highly pure recombinant protein. To accomplish this, the codon-optimized 1507 bp coding sequence of the human ETS2 gene in fusion with a His-tag, a cell-penetrating peptide, and a nuclear localization sequence was cloned in the protein expression vector and transformed into E. coli strain BL21(DE3) for expression. The recombinant protein was purified to homogeneity under native conditions using immobilized metal ion affinity chromatography, and its identity was confirmed by Western blotting with an ETS2 antibody. Using far-UV circular dichroism spectroscopy, we have demonstrated that the recombinant protein has retained its secondary structure, predominantly comprising of random coils and β-sheets. Prospectively, this biological recombinant ETS2 protein can substitute viral and genetic forms of ETS2 in a cell reprogramming process to facilitate the generation of clinical-grade cells. It can also be used to investigate its molecular role in various biological processes and diseases and for biochemical and structural studies.
Similar content being viewed by others
References
Borgohain, M. P., Narayan, G., Kumar, H. K., Dey, C., & Thummer, R. P. (2018). Maximizing expression and yield of human recombinant proteins from bacterial cell factories for biomedical applications. In P. Kumar, J. K. Patra & P. Chandra (Eds.), Advances in microbial biotechnology (pp. 447–486). Apple Academic Press.
Nezafat, N., Sadraeian, M., Rahbar, M. R., Khoshnoud, M. J., Mohkam, M., Gholami, A., et al. (2015). Production of a novel multi-epitope peptide vaccine for cancer immunotherapy in TC-1 tumor-bearing mice. Biologicals, 43, 11–17.
Borgohain, M. P., Haridhasapavalan, K. K., Dey, C., Adhikari, P., & Thummer, R. P. (2019). An insight into DNA-free reprogramming approaches to generate integration-free induced pluripotent stem cells for prospective biomedical applications. Stem Cell Reviews and Reports, 15, 286–313.
Dey, C., Narayan, G., Krishna Kumar, H., Borgohain, M., Lenka, N. & Thummer, R. P. (2017). Cell-penetrating peptides as a tool to deliver biologically active recombinant proteins to generate transgene-free induced pluripotent stem cells. Life Sciences Group: Studies on Stem Cells Research and Therapy, 3(1), 006–015.
Maertens, B., Spriestersbach, A., von Groll, U., Roth, U., Kubicek, J., Gerrits, M., et al. (2010). Gene optimization mechanisms: A multi-gene study reveals a high success rate of full-length human proteins expressed in Escherichia coli. Protein Science, 19, 1312–1326.
Burgess-Brown, N. A., Sharma, S., Sobott, F., Loenarz, C., Oppermann, U., & Gileadi, O. (2008). Codon optimization can improve expression of human genes in Escherichia coli: A multi-gene study. Protein Expression and Purification, 59, 94–102.
Donaldson, L. W., Petersen, J. M., Graves, B. J., & McIntosh, L. P. (1996). Solution structure of the ETS domain from murine Ets-1: A winged helix-turn-helix DNA binding motif. The EMBO Journal, 15, 125–134.
Yamamoto, H., Flannery, M. L., Kupriyanov, S., Pearce, J., McKercher, S. R., Henkel, G. W., et al. (1998). Defective trophoblast function in mice with a targeted mutation of Ets2. Genes & Development, 12, 1315–1326.
Georgiades, P., & Rossant, J. (2006). Ets2 is necessary in trophoblast for normal embryonic anteroposterior axis development. Development, 133, 1059–1068.
Sheydina, A., Volkova, M., Jiang, L., Juhasz, O., Zhang, J., Tae, H. J., et al. (2012). Linkage of cardiac gene expression profiles and ETS2 with lifespan variability in rats. Aging Cell, 11, 350–359.
Islas, J. F., Liu, Y., Weng, K.-C., Robertson, M. J., Zhang, S., Prejusa, A., et al. (2012). Transcription factors ETS2 and MESP1 transdifferentiate human dermal fibroblasts into cardiac progenitors. Proceedings of the National Academy of Sciences, 109, 13016–13021.
Kidder, B. L. (2020). Direct reprogramming of mouse embryonic fibroblasts to induced trophoblast stem cells. In B. L. Kidder (Ed.), Stem cell transcriptional networks (pp. 285–292). Springer.
Seth, A., & Watson, D. K. (2005). ETS transcription factors and their emerging roles in human cancer. European Journal of Cancer, 41, 2462–2478.
Kabbout, M., Garcia, M. M., Fujimoto, J., Liu, D. D., Woods, D., Chow, C.-W., et al. (2013). Ets2 mediated tumor suppressive function and met oncogene inhibition in human non-small cell lung cancer. Clinical Cancer Research, 19, 3383–3395.
Fry, E. A., & Inoue, K. (2018). Aberrant expression of ETS1 and ETS2 proteins in cancer. Cancer Reports and Reviews, 2(3), 5–10.
Liu, D. D., & Kang, Y. (2017). Ets2 anchors the prometastatic function of mutant p53 in osteosarcoma. Genes & Development, 31, 1823–1824.
Do, P. M., Varanasi, L., Fan, S., Li, C., Kubacka, I., Newman, V., et al. (2012). Mutant p53 cooperates with ETS2 to promote etoposide resistance. Genes & Development, 26, 830–845.
Ma, X., Jiang, Z., Li, N., Jiang, W., Gao, P., Yang, M., et al. (2019). Ets2 suppresses inflammatory cytokines through MAPK/NF-κB signaling and directly binds to the IL-6 promoter in macrophages. Aging (Albany NY), 11, 10610.
Bosnali, M., & Edenhofer, F. (2008). Generation of transducible versions of transcription factors Oct4 and Sox2. Biological Chemistry, 389, 851–861.
Münst, B., Thier, M. C., Winnemöller, D., Helfen, M., Thummer, R. P., & Edenhofer, F. (2016). Nanog induces suppression of senescence through downregulation of p27KIP1 expression. Journal of Cell Science, 129, 912–920.
Peitz, M., Münst, B., Thummer, R. P., Helfen, M., & Edenhofer, F. (2014). Cell-permeant recombinant Nanog protein promotes pluripotency by inhibiting endodermal specification. Stem Cell Research, 12, 680–689.
Galluccio, M., Pochini, L., Amelio, L., Accardi, R., Tommasino, M., & Indiveri, C. (2009). Over-expression in E. coli and purification of the human OCTN1 transport protein. Protein Expression and Purification, 68, 215–220.
Wu, X., Nie, C., Huang, Z., Nie, Y., Yan, Q., Xiao, Y., et al. (2009). Expression and purification of human keratinocyte growth factor 2 by fusion with SUMO. Molecular Biotechnology, 42, 68–74.
Chang, Y.-H., Wang, Y.-L., Lin, J.-Y., Chuang, L.-Y., & Hwang, C.-C. (2010). Expression, purification, and characterization of a human recombinant 17β-hydroxysteroid dehydrogenase type 1 in Escherichia coli. Molecular Biotechnology, 44, 133–139.
Galluccio, M., Amelio, L., Scalise, M., Pochini, L., Boles, E., & Indiveri, C. (2012). Over-expression in E. coli and purification of the human OCTN2 transport protein. Molecular Biotechnology, 50, 1–7.
Kim, Y. V., Gasparian, M. E., Bocharov, E. V., Chertkova, R. V., Tkach, E. N., Dolgikh, D. A., et al. (2015). New strategy for high-level expression and purification of biologically active monomeric TGF-β1/C77S in Escherichia coli. Molecular Biotechnology, 57, 160–171.
Zamani, M., Berenjian, A., Hemmati, S., Nezafat, N., Ghoshoon, M. B., Dabbagh, F., et al. (2015). Cloning, expression, and purification of a synthetic human growth hormone in Escherichia coli using response surface methodology. Molecular Biotechnology, 57, 241–250.
Samuel, R. V. M., Farrukh, S. Y., Rehmat, S., Hanif, M. U., Ahmed, S. S., Musharraf, S. G., et al. (2018). Soluble production of human recombinant VEGF-A121 by using SUMO fusion technology in Escherichia coli. Molecular Biotechnology, 60, 585–594.
Bhat, E. A., Sajjad, N., Sabir, J. S., Kamli, M. R., Hakeem, K. R., Rather, I. A., et al. (2020). Molecular cloning, expression, overproduction and characterization of human TRAIP Leucine zipper protein. Saudi Journal of Biological Sciences, 27(6), 1562–1565.
Curcio, R., Aiello, D., Vozza, A., Muto, L., Martello, E., Cappello, A. R., et al. (2020). Cloning, purification, and characterization of the catalytic C-terminal domain of the human 3-hydroxy-3-methyl glutaryl-CoA reductase: An effective, fast, and easy method for testing hypocholesterolemic compounds. Molecular Biotechnology, 62, 119–131.
Guen, V. J., Gamble, C., Flajolet, M., Unger, S., Thollet, A., Ferandin, Y., et al. (2013). CDK10/cyclin M is a protein kinase that controls ETS2 degradation and is deficient in STAR syndrome. Proceedings of the National Academy of Sciences, 110, 19525–19530.
Vasina, J. A., & Baneyx, F. (1997). Expression of aggregation-prone recombinant proteins at low temperatures: A comparative study of the Escherichia coli cspA and tac promoter systems. Protein Expression and Purification, 9(2), 211–218.
Sørensen, H. P., & Mortensen, K. K. (2005). Soluble expression of recombinant proteins in the cytoplasm of Escherichia coli. Microbial Cell Factories, 4, 1.
San-Miguel, T., Pérez-Bermúdez, P., & Gavidia, I. (2013). Production of soluble eukaryotic recombinant proteins in E. coli is favoured in early log-phase cultures induced at low temperature. Springerplus, 2, 89.
Wingfield, P. T. (2015). Overview of the purification of recombinant proteins. Current Protocols in Protein Science, 80, 6.1. 1–6.1. 35.
Araki, Y., Hamafuji, T., Noguchi, C., & Shimizu, N. (2012). Efficient recombinant production in mammalian cells using a novel IR/MAR gene amplification method. PLoS One, 7, e41787.
Xu, D., Dwyer, J., Li, H., Duan, W., & Liu, J.-P. (2008). Ets2 maintains hTERT gene expression and breast cancer cell proliferation by interacting with c-Myc. Journal of Biological Chemistry, 283, 23567–23580.
Serna, N., Sánchez-García, L., Unzueta, U., Díaz, R., Vázquez, E., Mangues, R., et al. (2018). Protein-based therapeutic killing for cancer therapies. Trends in Biotechnology, 36, 318–335.
Stock, K., Nolden, L., Edenhofer, F., Quandel, T., & Brüstle, O. (2010). Transcription factor-based modulation of neural stem cell differentiation using direct protein transduction. Cellular and Molecular Life Sciences, 67, 2439–2449.
Kelly, S. M., Jess, T. J., & Price, N. C. (2005). How to study proteins by circular dichroism. Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, 1751, 119–139.
Greenfield, N. J. (2006). Using circular dichroism spectra to estimate protein secondary structure. Nature Protocols, 1, 2876.
Micsonai, A., Wien, F., Bulyáki, É., Kun, J., Moussong, É., Lee, Y.-H., et al. (2018). BeStSel: A web server for accurate protein secondary structure prediction and fold recognition from the circular dichroism spectra. Nucleic Acids Research, 46, W315–W322.
Louis-Jeune, C., Andrade-Navarro, M. A., & Perez-Iratxeta, C. (2012). Prediction of protein secondary structure from circular dichroism using theoretically derived spectra. Proteins: Structure Function, and Bioinformatics, 80, 374–381.
Acknowledgements
We thank all the members of the Laboratory for Stem Cell Engineering and Regenerative Medicine (SCERM) for their critical reading and excellent support. This work was supported by a research grant from Science and Engineering Research Board (SERB), Department of Science and Technology, Government of India (Early Career Research Award; ECR/2015/000193).
Author information
Authors and Affiliations
Contributions
KKH was responsible for conception and design, collection and/or assembly of data, data analysis and interpretation, manuscript writing, and final approval of the manuscript; PKS was responsible for collection and/or assembly of data, data analysis and interpretation, and final editing and approval of the manuscript; RPT was responsible for conception and design, data analysis and interpretation, manuscript writing, final approval of manuscript, and financial support. All the authors gave consent for publication.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflicts of interest.
Ethical Approval
This article does not contain any studies with human participants or animals performed by any of the authors.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Haridhasapavalan, K.K., Sundaravadivelu, P.K. & Thummer, R.P. Codon Optimization, Cloning, Expression, Purification, and Secondary Structure Determination of Human ETS2 Transcription Factor. Mol Biotechnol 62, 485–494 (2020). https://doi.org/10.1007/s12033-020-00266-8
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12033-020-00266-8