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The rs12826786 in HOTAIR lncRNA Is Associated with Risk of Autism Spectrum Disorder

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Abstract

Autism spectrum disorder (ASD) encompasses a group of neurodevelopmental disorders with complex pattern of inheritance. Several single nucleotide polymorphisms (SNPs) within coding or non-coding regions of genome have been associated with risk of this disorder. In the current study, we genotyped rs12826786, rs1899663, and rs4759314 SNPs within HOX transcript antisense RNA (HOTAIR) in 427 ASD cases and 430 normally developed children. The rs12826786 was associated with ASD in allelic (T vs. C: OR (95% CI) = 1.29 (1.07–1.57), adjusted P value = 0.03) and recessive (TT vs. TC + CC: OR (95% CI) = 1.60 (1.10–2.32), adjusted P value = 0.04) models. However, the other SNPs were not associated with ASD in any inheritance model. No estimated haplotype within HOTAIR was associated with risk of ASD in the assessed population. Based on the results of the current investigation, the rs12826786 can be regarded as a risk locus for ASD in Iranian population.

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References

  • American Psychiatric Association (2013) Diagnostic and statistical manual of mental disorders (DSM-5®). American Psychiatric Pub, Washington, D.C.

    Book  Google Scholar 

  • Bayram S, Sumbul AT, Dadas E (2016) A functional HOTAIR rs12826786 C > T polymorphism is associated with breast cancer susceptibility and poor clinicopathological characteristics in a Turkish population: a hospital-based case-control study. Tumour Biol 37(4):5577–5584

    Article  CAS  Google Scholar 

  • Bhan A, Mandal SS (2015) LncRNA HOTAIR: A master regulator of chromatin dynamics and cancer. Biochim Biophys Acta 1856(1):151–164

    CAS  PubMed  PubMed Central  Google Scholar 

  • Cogill SB, Srivastava AK, Yang MQ, Wang L (2018) Co-expression of long non-coding RNAs and autism risk genes in the developing human brain. BMC Syst Biol 12(Suppl 7):91

    Article  CAS  Google Scholar 

  • Guo W, Dong Z, Bai Y, Guo Y, Shen S, Kuang G, Xu J (2015) Associations between polymorphisms of HOTAIR and risk of gastric cardia adenocarcinoma in a population of north China. Tumour Biol 36(4):2845–2854

    Article  CAS  Google Scholar 

  • Loewen G, Zhuo Y, Zhuang Y, Jayawickramarajah J, Shan B (2014) lincRNA HOTAIR as a novel promoter of cancer progression. J Can Res Updates 3(3):134–140

    Article  Google Scholar 

  • Obaid M, Udden SMN, Deb P, Shihabeddin N, Zaki MH, Mandal SS (2018) LncRNA HOTAIR regulates lipopolysaccharide-induced cytokine expression and inflammatory response in macrophages. Sci Rep 8:15670 English

    Article  Google Scholar 

  • Ozonoff S, Young GS, Carter A, Messinger D, Yirmiya N, Zwaigenbaum L, Bryson S, Carver LJ, Constantino JN, Dobkins K, Hutman T, Iverson JM, Landa R, Rogers SJ, Sigman M, Stone WL (2011) Recurrence risk for autism spectrum disorders: a Baby Siblings Research Consortium study. Pediatrics. 128(3):e488–e495

    PubMed  PubMed Central  Google Scholar 

  • Philippidou P, Dasen JS (2013) Hox genes: choreographers in neural development, architects of circuit organization. Neuron 80(1):12–34 English

    Article  CAS  Google Scholar 

  • Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, Goodnough LH, Helms JA, Farnham PJ, Segal E, Chang HY (2007) Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell. 129(7):1311–1323

    Article  CAS  Google Scholar 

  • Rosenberg RE, Law JK, Yenokyan G, McGready J, Kaufmann WE, Law PA (2009) Characteristics and concordance of autism spectrum disorders among 277 twin pairs. Arch Pediatr Adolesc Med 163(10):907–914 Epub 2009/10/07. eng

    Article  Google Scholar 

  • Siniscalco D, Schultz S, Brigida AL, Antonucci N (2018) Inflammation and neuro-immune dysregulations in autism spectrum disorders. Pharmaceuticals 11(2) English

  • Wang Y, Zhao X, Ju W, Flory M, Zhong J, Jiang S et al (2015) Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder. Transl Psychiatry 5 English

    Article  CAS  Google Scholar 

  • Wang S, Zhang X, Guo Y, Rong H, Liu T (2017) The long noncoding RNA HOTAIR promotes Parkinson's disease by upregulating LRRK2 expression. Oncotarget. 8(15):24449–24456

    PubMed  PubMed Central  Google Scholar 

  • Yoo J, Lee Y, Kim Y, Rha SY, Kim Y (2008) SNPAnalyzer 2.0: a web-based integrated workbench for linkage disequilibrium analysis and association analysis. BMC Bioinformatics 9:290

    Article  Google Scholar 

  • Young AM, Campbell E, Lynch S, Suckling J, Powis SJ (2011) Aberrant NF-kappaB expression in autism spectrum condition: a mechanism for neuroinflammation. Front Psychiatry 2:27

    Article  CAS  Google Scholar 

  • Zha YH, Ding E, Yang LQ, Mao L, Wang XW, McCarthy BA et al (2012) Functional dissection of HOXD cluster genes in regulation of neuroblastoma cell proliferation and differentiation. PLoS One 7(8) English

    Article  CAS  Google Scholar 

  • Ziats MN, Rennert OM (2013) Aberrant expression of long noncoding RNAs in autistic brain. J Mol Neurosci 49(3):589–593

    Article  CAS  Google Scholar 

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Funding

The current study was supported by a grant from Hamadan University of Medical Sciences.

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Correspondence to Mohammad Taheri or Soudeh Ghafouri-Fard.

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The study protocol was approved by the ethics committees of Hamadan Universities of Medical Sciences.

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The authors declare that they have no conflict of interest.

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Safari, M., Noroozi, R., Taheri, M. et al. The rs12826786 in HOTAIR lncRNA Is Associated with Risk of Autism Spectrum Disorder. J Mol Neurosci 70, 175–179 (2020). https://doi.org/10.1007/s12031-019-01421-w

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  • DOI: https://doi.org/10.1007/s12031-019-01421-w

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