Fig. 1 | Neuroinformatics

Fig. 1

From: NeuroMorph: A Toolset for the Morphometric Analysis and Visualization of 3D Models Derived from Electron Microscopy Image Stacks

Fig. 1

The user interface. 1, The leftmost window shows the geometry tools with which morphological measurements can be made of whole, or parts of models. 2, The 3D view of the model shows all the vertices that comprise a single dendrite segmented from a stack of EM images. An individual dendritic spine protruding from the dendrite has been selected (yellow vertices). 3, Use of the volume and surface area measurement functions will create two new children (the meshes yourname_surf and yourname_vol), and will be listed in the outliner window. These new meshes will be exact copies of the highlighted region and contain the correct surface area and volume properties, as will be displayed in Geometry Properties field, 4

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