Abstract
Genetic alterations frequently are involved in the development of a pituitary adenoma in young age. We here characterize the functional role of a deletion in CDKN1B 5′-UTR region (c.-29_-26delAGAG) identified in an acromegalic patient that developed a growth hormone in pituitary adenoma during childhood. Our results show that the identified novel heterozygous deletion in the CDKN1B 5′-UTR region associates with a reduction in CDKN1B mRNA levels, a predicted altered secondary mRNA structure, and a reduced CDKN1B 5′-UTR transcriptional activity in vitro. The patient displayed loss of heterozygosity in the same CDKN1B 5′-UTR region at tissue level and the 5′UTR region containing the deleted sequence encompasses a GRE. These findings indicate that the identification of functional alterations of newly discovered genetic derangements need to be fully characterized and always correlated with the clinical manifestations.
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Acknowledgments
This work was supported by grants from the Italian Ministry of Education, Research and University (FIRB RBAP11884M, RBAP1153LS, 2010TYCL9B_002), Fondazione Cassa di Risparmio di Ferrara, and Associazione Italiana per la Ricerca sul Cancro (AIRC) in collaboration with Laboratorio in rete del Tecnopolo “Tecnologie delle terapie avanzate” (LTTA) of the University of Ferrara.
Conflict of interest
EdU received consulting fees from Novartis and Pfizer. MCZ received consulting fees from Novartis and Genzyme. The other authors have nothing to disclose and have no conflict of interest.
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Silvia Sambugaro and Mauro Di Ruvo have contributed equally to this work.
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Online Resource 1
Detection of loss of heterozygosity (LOH) in the patient’s pituitary adenoma. Somatic DNA from the patient’s pituitary adenoma was amplified for the CDKN1B 5′-UTR region encompassing the deleted sequence and has been separated on a 10 % acrylamide gel. M = DNA Molecular Weight Marker VIII (Roche, Milano, IT). # = germline DNA amplification for MEN1 exon 7 gene from the DNA isolated form the patient’s pituitary adenoma. + = positive control for CDKN1B 5′-UTR region amplification from germ-line DNA (unaffected patient). B = CDKN1B 5′-UTR region amplification from the patient’s germ-line DNA. PA = CDKN1B 5′-UTR region amplification from the DNA isolated form the pituitary adenoma of our patient. NTC = no template control. Supplementary material 1 (TIFF 310 kb)
Online Resource 2
Functional characterization of the c.-29_-26delAGAG in CDKN1B 5′-UTR region. Luciferase gene reporter assay was performed with three cells lines (GH3, MCF7, and AtT-20/D16v-F2) transfected with either pGL4 basic (promoterless, gray bars), pGL4-5′-UTR-WT (white bars), or pGL4-5′-UTR-DEL (black bars). Data represent the mean of three independent experiments and are expressed as mean ± SEM luciferase activity % vs. pGL45′-UTR-WT luciferase activity. **p < 0.01 vs. pGL45′-UTR-WT luciferase activity. Supplementary material 2 (TIFF 94 kb)
Online Resource 3
ChIP assay. HeLa cells were treated without (control) or with 10−6M Dexamethasone (+ DEX) and chromatin extracts were immunoprecipitated with specific antibodies: normal Rabbit IgG antibody (Anti- Rabbit Ab, negative control), anti-acetyl-histone H3 antibody (Anti- H3 Ab, positive control), Glucocorticoid Receptor antibody (Anti-GR Ab). Input: input sample, resenting a control for chromatin loading. Purified DNA was analyzed by standard PCR as described in the Materials and methods section. M = DNA Molecular Weight Marker VIII. NTC = no template control. Supplementary material 3 (TIFF 228 kb)
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Sambugaro, S., Di Ruvo, M., Ambrosio, M.R. et al. Early onset acromegaly associated with a novel deletion in CDKN1B 5′UTR region. Endocrine 49, 58–64 (2015). https://doi.org/10.1007/s12020-015-0540-y
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DOI: https://doi.org/10.1007/s12020-015-0540-y