Skip to main content
Log in

Effects of Different Spatial Resolutions on Prediction Accuracy of Thunnus alalunga Fishing Ground in Waters Near the Cook Islands Based on Long Short-Term Memory (LSTM) Neural Network Model

  • Published:
Journal of Ocean University of China Aims and scope Submit manuscript

Abstract

Albacore tuna (Thunnus alalunga) is one of the target species of tuna longline fishing, and waters near the Cook Islands are a vital albacore tuna fishing ground. Marine environmental data are usually presented with different spatial resolutions, which leads to different results in tuna fishery prediction. Study on the impact of different spatial resolutions on the prediction accuracy of albacore tuna fishery to select the best spatial resolution can contribute to better management of albacore tuna resources. The nominal catch per unit effort (CPUE) of albacore tuna is calculated according to vessel monitor system (VMS) data collected from Chinese distant-water fishery enterprises from January 1, 2017 to May 31, 2021. A total of 26 spatiotemporal and environmental factors, including temperature, salinity, dissolved oxygen of 0–300 m water layer, chlorophyll-a concentration in the sea surface, sea surface height, month, longitude, and latitude, were selected as variables. The temporal resolution of the variables was daily and the spatial resolutions were set to be 0.5° × 0.5°, 1° × 1°, 2° × 2°, and 5° × 5°. The relationship between the nominal CPUE and each individual factor was analyzed to remove the factors irrelavant to the nominal CPUE, together with a multicollinearity diagnosis on the factors to remove factors highly related to the other factors within the four spatial resolutions. The relationship models between CPUE and spatiotemporal and environmental factors by four spatial resolutions were established based on the long short-term memory (LSTM) neural network model. The mean absolute error (MAE) and root mean square error (RMSE) were used to analyze the fitness and accuracy of the models, and to determine the effects of different spatial resolutions on the prediction accuracy of the albacore tuna fishing ground. The results show the resolution of 1 ° × 1° can lead to the best prediction accuracy, with the MAE and RMSE being 0.0268 and 0.0452 respectively, followed by 0.5° × 0.5°, 2° × 2° and 5° × 5° with declining prediction accuracy. The results suggested that 1) albacore tuna fishing ground can be predicted by LSTM; 2) the VMS records the data in detail and can be used scientifically to calculate the CPUE; 3) correlation analysis, and multicollinearity diagnosis are necessary to improve the prediction accuracy of the model; 4) the spatial resolution should be 1 ° × 1 ° in the forecast of albacore tuna fishing ground in waters near the Cook Islands.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Abeysiriwardana, H. D., and Gomes, P., 2022. Integrating vegetationindices and geo-environmental factors in GIS-based landslide-susceptibility mapping: Using logistic regression. Journal of Mountain Science, 19(2): 16, DOI: https://doi.org/10.1007/s11629-021-6988-8.

    Article  Google Scholar 

  • Alghazzawi, D., Bamasag, O., Albeshri, A., Sana, I., Ullah, H., and Asghar, M. Z., 2022. Efficient prediction of court judgements using an LSTM+CNN Neural Network Model with an optimal feature set. Mathematics, 10: 683, DOI: https://doi.org/10.3390/math10050683.

    Article  Google Scholar 

  • Beverly, S., Chapman, L., and Sokimi, W., 2003. Horizontal Longline Fishing Methods and Techniques A Manual for Fishermen. Secretariat of the Pacific Community, Nouméa, 130pp.

    Google Scholar 

  • Bez, N., Walker, E., Gaertner, D., Rivoirard, J., and Gaspar, P., 2011. Fishing activity of tuna purse seiners estimated from vessel monitoring system (VMS) data. Canadian Journal of Fisheries & Aquatic Sciences, 68(11): 1998–2010, DOI: https://doi.org/10.1139/f2011-114.

    Article  Google Scholar 

  • Brown, C. J., Desbiens, A., Campbell, M. D., Game, E. T., Gilman, E., Hamilton, R. J., et al., 2021. Electronic monitoring for improved accountability in western Pacific tuna longline fisheries. Marine Policy, 132(1–3): 104664, DOI: https://doi.org/10.1016/j.marpol.2021.104664.

    Article  Google Scholar 

  • Chen, J. T., Dai, X. J., and Gu, B., 2005. Analysis of the development of South Pacific albacore in China. China Fisheries Economics, 2: 49–50, 55, DOI: https://doi.org/10.3969/j.issn.0253-4193.2013.01.018 (in Chinese with English abstract).

    Google Scholar 

  • Chen, X. Z., Fan, W., Cui, X. S., Zhou, W. F., and Tang, F. H., 2013. Fishing ground forcasting Thunnus alalunga in Indian Ocean based on random forest. Acta Oceanica Sinica, 35(1): 158–164, DOI: https://doi.org/10.3969/j.issn.0253-4193.2013.01.018 (in Chinese with English abstract).

    Google Scholar 

  • Dettloff, K., 2021. Improvements to the Stephens-MacCall approach for calculating CPUE from multispecies fisheries logbook data. Fisheries Research, 242: 106038, DOI: https://doi.org/10.1016/j.fishres.2021.106038.

    Article  Google Scholar 

  • Domokos, R., Seki, M. P., Polovina, J. J., and Hawn, D. R., 2007. Oceanographic investigation of the American Samoa albacore (Thunnus alalunga) habitat and longline fishing grounds. Fisheries Oceanography, 16(6): 555–572, DOI: https://doi.org/10.1111/j.1365-2419.2007.00451.

    Article  Google Scholar 

  • Eastwood, P. D., Meaden, G. J., Carpentier, A., and Rogers, S. I., 2003. Estimating limits to the spatial extent and suitability of sole (Solea solea) nursery grounds in the Dover Strait. Journal of Sea Reasearch, 50: 151–165, DOI: https://doi.org/10.1016/S1385-1101(03)00079-0.

    Article  Google Scholar 

  • Fan, W., Zhang, J., and Zhou, W. F., 2007. The relationship between longline albacore Thunnus alalunga and sea surface temperature in the South Pacific. Journal of Dalian Fisheries University, 5: 366–371, DOI: https://doi.org/10.3969/j.issn.1000-9957.2007.05.010 (in Chinese with English abstract).

    Google Scholar 

  • Fan, Y. C., Chen, X. J., and Wang, J. T., 2015. Forecasting central fishing of Thunnus alalunga based on multi-factors habitat suitability index in the South Pacific. Marine Limnology Bulletin, 2: 36–44, DOI: https://doi.org/10.13984/j.cnki.cn37-1141.2015.02.006 (in Chinese with English abstract).

    Google Scholar 

  • Feng, Y. J., Chen, L. J., and Chen, X. J., 2019. The impact of spatial scale on local Moran’s I clustering of annual fishing effort for Dosidicus gigas offshore Peru. Journal of Oceanology and Limnology, 37(1): 330–343, DOI: https://doi.org/10.1007/s00343-019-7316-9.

    Article  Google Scholar 

  • Gers, F., and Schraudolph, N. N., 2002. Learning precise timing with LSTM recurrent networks. Journal of Machine Learning Research, 3(1): 115–143, DOI: https://doi.org/10.1162/153244303768966139.

    Google Scholar 

  • Gong, C. X., Chen, X. J., Gao, F., Guan, W. J., and Lei, L., 2011. Review on habitat suitability index in fishery science. Journal of Shanghai Ocean University, 20(2): 260–269, DOI: CNKI:SUN:SSDB.0.2011-02-017 (in Chinese with English abstract).

    Google Scholar 

  • Graham, M. H., 2003. Confronting multicollinearity in ecological multiple regression. Ecology, 84(11): 2809–2815.

    Article  Google Scholar 

  • Guan, W. J., Gao, F., Lei, L., and Chen, X. J., 2015. Comparison of habitat models and prediction results under various data sources. Journal of Fishery Science of China, 22(1): 149–157 (in Chinese with English abstract).

    Google Scholar 

  • Guo, G. G., Zhang, S. M., Fan, W., Chen, X. J., and Yang, S. L., 2016. Spatial analysis of vertical active layer of albacore tuna (Thunnus alalunga) in the South Pacific. South China Fisheries Science, 12(5): 123–130, DOI: https://doi.org/10.3969/j.issn.2095-0780.2016.05.016.

    Google Scholar 

  • He, R. Y., Chen, K., Moore, T., and Li, M. K., 2010. Mesoscale variations of sea surface temperature and ocean color patterns at the Mid-Atlantic Bight shelfbreak. Geophysical Research Letters, 37(9): 493–533, DOI: https://doi.org/10.1029/2010GL042658.

    Article  Google Scholar 

  • He, X. Q., and Liu, W. Q., 2007. Applied Regression Analysis. Renmin University of China Press, Beijing, 171–184 (in Chinese).

    Google Scholar 

  • Hilborn, R., and Walters, C., 1992. Quantitative fisheries stock assessment: Choice. Stock and Recruitment, 7: 241–296, DOI: https://doi.org/10.1086/417864.

    Google Scholar 

  • Hinton, M. G., and Maunder, M. N., 2003. Methods for standardizing CPUE and how to select among them. Collective Volumes of Scientific Papers in ICCAT, 56: 169–177.

    Google Scholar 

  • Jin, R. L., Sun, K. P., He, H. S., and Zhou, Y. F., 2008. Research advances in habitat suitability index model. Chinese Journal of Ecology, 5: 841–846 (in Chinese with English abstract).

    Google Scholar 

  • Joo, R., Bertrand, S., Tam, J., and Fablet, R., 2013. Hidden Markov models: The best models for forager movements?. PLoS One, 8(8): e71246, DOI: https://doi.org/10.1371/journal.pone.0071246.

    Article  Google Scholar 

  • Kelleher, K., 2005. Discards in the world’s marine fisheries: An update. FAO Fisheries Technical Paper. No.470. Rome, FAO, 131pp.

  • Mangel, M., Quinn, T. J., and Deriso, R. B., 1999. Quantitative fish dynamics. Quarterly Review of Biology, 2(1): 286–287, DOI: https://doi.org/10.2307/177155.

    Google Scholar 

  • Matear, R. J., Chamberlain, M. A., Sun, C., and Feng, M., 2015. Climate change projection for the western tropical Pacific Ocean using a high-resolution ocean model: Implications for tuna fisheries. Deep-Sea Research Part II, 113: 22–46, DOI: https://doi.org/10.1016/j.dsr2.2014.07.003.

    Article  Google Scholar 

  • Maunder, M. N., and Punt, A. E., 2004. Standardizing catch and effort data: A review of recent approaches. Fisheries Research, 70: 141–193, DOI: https://doi.org/10.1016/j.fishres.2004.08.002.

    Article  Google Scholar 

  • Miao, Z. Q., and Huang, X. C., 2003. Pelagic Tuna Fishery. Shanghai Science and Technology Literature Press, Shanghai, 1–13 (in Chinese).

    Google Scholar 

  • Mills, C. M., Townsend, S. E., Jennings, S., Eastwood, P. D., and Houghton, C. A., 2007. Estimating high resolution trawl fishing effort from satellite-based vessel monitoring system data. ICES Journal of Marine Science, 64(2): 248–255, DOI: https://doi.org/10.1093/icesjms/fsl026.

    Article  Google Scholar 

  • Murawski, S. A., Wigley, S. E., Fogarty, M. J., Rago, P. J., and Mountain, D. G., 2005. Effort distribution and catch patterns adjacent to temperate MPAs. ICES Journal of Marine Science, 6: 1150–1167, DOI: https://doi.org/10.1016/j.icesjms.2005.04.005.

    Article  Google Scholar 

  • Nishida, T., and Kitakado, T., 2011. Investigation of the sharp drop of swordfish CPUE of Japanese tuna longline fisheries in 1990’s in the SW Indian Ocean. Working Party on Billfish (WPB), Victoria, Seychelles, 1–14.

  • Okamoto, H., 2014. CPUE of bigeye and yellowfin tuna caught by Japanese longliner in the Indian Ocean standardized by GLM considering several aspects of area, catchability and data resolution. 16th Working Party on Tropical Tunas. Bali, Indonesia, 5–18.

  • Oshima, K., Mizuno, A., Ichinokawa, M., Takeuchi, Y., Nakano, H., and Uozumi, Y., 2012. Shift of fishing efforts for Pacific bluefin tuna and target shift occurred in Japanese coastal longliners in recent years. Working document submitted to the ISC Pacific Bluefin Tuna Working Group. Honolulu, Hawaii.

  • Quan, B., Yang, B. C., Hu, K. Q., Guo, C. X., and Li, X. C., 2018. Prediction model of ship trajectory based on LSTM. Computer Science, 45(S2): 126–131 (in Chinese with English abstract).

    Google Scholar 

  • Rose, G. A., and Kulka, D. W., 1996. Hyperaggregation of fish and fisheries: How catch-per-unit-effort increased as the northern cod (Gadus morhua) declined. Canadian Journal of Fisheries and Aquatic Sciences, 56(S1): 118–127, DOI: https://doi.org/10.1139/f99-207.

    Article  Google Scholar 

  • Rybicki, S., Hamon, K. G., Simons, S., and Temming, A., 2021. The more the merrier? Testing spatial resolution to simulate area closure effects on the pelagic North Sea autumn spawning herring stock and fishery. Regional Studies in Marine Science, 48: 102023.

    Article  Google Scholar 

  • Shapiro, S. S., and Wilk, M. B., 1965. An analysis of variance test for normality (complete samples). Biometrika, 52(3–4): 591–611, DOI: https://doi.org/10.1093/biomet/52.3-4.591.

    Article  Google Scholar 

  • Shook, J., Gangopadhyay, T., Wu, L., Ganapathysubramanian, B., Sarkar, S., and Singh, A. K., 2021. Crop yield prediction integrating genotype and weather variables using deep learning. PLoS One, 16(6): e0252402, DOI: https://doi.org/10.1371/journal.pone.0252402.

    Article  Google Scholar 

  • Song, L. M., and Xu, H., 2021. A review of tuna longline catch performance. Journal of Fishery Science of China, 28(7): 925–937, DOI: https://doi.org/10.12264/JFSC2020-6002 (in Chinese with English abstract).

    Google Scholar 

  • Song, L. M., Ren, S. Y., Hong, Y. R., Zhang, T. J., Sui, H. S., Li, B., et al., 2022a. Comparison on fishing ground forecast models of Thunnus alalunga in the tropical waters of Atlantic Ocean. Oceanologia et Limnologia Sinica, 53(2): 496–504, DOI: https://doi.org/10.11693/hyhz20211000253 (in Chinese with English abstract).

    Google Scholar 

  • Song, L. M., Ren, S. Y., Zhang, M., and Sui, H. S., 2021a. Fishing ground forecasting models for yellowfin tuna (Thunnus albacares) in the tropical waters of the Atlantic Ocean based on ensemble learning. Journal of Fishery Sciences of China, 28(8): 1069–1078 (in Chinese with English abstract).

    Google Scholar 

  • Song, L. M., Ren, S. Y., Zhang, M., and Sui, H. S., 2022b. Fishing ground forecasting of bigeye tuna (Thunnus obesus) in the tropical waters of Atlantic Ocean based on ensemble learning. Journal of Fisheries of China, 47(4): 64–76, DOI: https://doi.org/10.11964/jfc.20210312692 (in Chinese with English abstract).

    Google Scholar 

  • Song, L. M., Xu, H., Sui, H. S., and Zhang, M., 2021b. Research progress on key technologies of marine fishery acoustic equipment. Fishery Modernization, 48(03): 18–27, 35, DOI: https://doi.org/10.3969/j.issn.1007-9580.2021.03.003 (in Chinese with English abstract).

    Google Scholar 

  • Thomson, J. D., Weiblen, G., Thomson, B. A., and Alfaro, S., 1996. Untangling multiple factors in spatial distributions: Lilies, gophers and rocks. Ecology, 77: 1698–1715, DOI: https://doi.org/10.2307/2265776.

    Article  Google Scholar 

  • Trustrum, K., and Fox, J., 1993. Regression diagnostics: An introduction. Journal of the Royal Statistical Society, 42(2): 201, DOI: https://doi.org/10.2307/2348998.

    Google Scholar 

  • Turner, M. G., O’Neill, R. V., Gardner, R. H., and Milne, B. T., 1989. Effects of changing spatial scale on the analysis of landscape pattern. Landscape Ecology, 3(3–4): 153–162, DOI: https://doi.org/10.1007/BF00131534.

    Article  Google Scholar 

  • Walker, E., and Bez, N., 2010. A pioneer validation of a statespace model of vessel trajectories (VMS) with observers’ data. Ecological Modelling, 221: 2008–2017, DOI: https://doi.org/10.1016/j.ecolmodel.2010.05.007.

    Article  Google Scholar 

  • Watson, J. T., Haynie, A. C., Sullivan, P. J., Perruso, L., O’Farrell, S., Sanchirico, J. M., et al., 2018. Vessel monitoring systems (VMS) reveal an increase in fishing efficiency following regulatory changes in a demersal longline fishery. Fisheries Research, 207: 85–94, DOI: https://doi.org/10.1016/j.fishres.2018.06.006.

    Article  Google Scholar 

  • Wiens, J. A., 1989. Spatial scaling in ecology. Functional Ecology, 3(4): 385–397, DOI: https://doi.org/10.2307/2389612.

    Article  Google Scholar 

  • Yuan, H. C., Zhang, Y., and Zhang, T. J., 2021. Research on forecast model of Pacific Thunnus obesus fishing ground based on EMD-BiLSTM. Fishery Modernization, 48(1): 87–96, DOI: https://doi.org/10.3969/j.issn.1007-9580.2021.01.012 (in Chinese with English abstract).

    Google Scholar 

  • Zainuddin, M., Saiton, K., and Saiton, S., 2008. Albacore (Thunnus alalunga) fishing ground in relation to oceanographic conditions in the western North Pacific Ocean using remotely sensed satellite data. Fisheries Oceanography, 17(2): 61–73, DOI: https://doi.org/10.1016/j.dsr2.2006.01.007.

    Article  Google Scholar 

  • Zhang, T. J., Song, L. M., Yuan, H. C., and Narcisse, E. B., 2019. A comparative study on CPUE standardization of bigeye tuna in the Indian Ocean using multi-scale fisheries data and environment data. Proceedings of the 10th Working Party on Methods. Donostia-San Sebastian, Spain, 15: 1–31.

    Google Scholar 

  • Zhang, T. J., Liao, Z. Z., Song, B., Yuan, H. C., Song, L. M., and Zhang, S. S., 2021. Improvement of marine environment feature extraction based on deep convolution embedded clustering (DCEC) for fishery forecast model–A case study of bigeye tuna (Thunnus obesus) in the Southwest Indian Ocean. Acta Oceanologica Sinica, 43(8): 105–117, DOI: https://doi.org/10.12284/hyxb2021072 (in Chinese with English abstract).

    Google Scholar 

  • Zhao, H. L., Chen, X. J., and Fang, X. Y., 2016. Forecasting fishing ground of yellowfin tuna in the eastern Pacific Ocean based on the habitat suitability index. Acta Ecologica Sinica, 36(3): 778–785, DOI: https://doi.org/10.5846/stxb201405130975 (in Chinese with English abstract).

    Google Scholar 

Download references

Acknowledgements

We thank Liancheng Overseas Fishery (Shenzhen) Co., Ltd., for providing VMS data. This research was supported by the National Natural Science Foundation of China (No. 32273185), the National Key R&D Program of China (No. 2020YFD0901205), and the Marine Fishery Resources Investigation and Exploration Program of the Ministry of Agriculture and Rural Affairs of China in 2021 (No. D-8006-21-0215). Gratitude also goes to Dr. Huihui Shen, School of Foreign Languages, Shanghai Ocean University for improving the manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Liming Song.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Xu, H., Song, L., Zhang, T. et al. Effects of Different Spatial Resolutions on Prediction Accuracy of Thunnus alalunga Fishing Ground in Waters Near the Cook Islands Based on Long Short-Term Memory (LSTM) Neural Network Model. J. Ocean Univ. China 22, 1427–1438 (2023). https://doi.org/10.1007/s11802-023-5525-5

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11802-023-5525-5

Key words

Navigation