Abstract
Insecticidal crystal proteins (ICPs) produced by Bacillus thuringiensis (Bt) exhibit strong toxicity. Soil bacteriophages destroy the ICPs in nature. Also, environmental pH, temperature, and ultraviolet (UV) radiation shorten the ICPs’ validity and infectivity. To enhance the validity of ICPs of Bt, the soil Bt phages and the environmental parameters such as soil pH, temperature, and UV should be subjected to continuous evaluation.
In this study, five Bt bacteriophages were isolated, characterized, and named BtØ3, BtØ5, BtØ7, BtØ9, and BtØ11. Electron microscopy investigation showed that the five phages have an icosahedral head and a long contractile tail. In addition, the restriction endonuclease BamHI enzyme cleaves the phage genomic DNA suggesting that all five phages have double-stranded DNA (dsDNA) belonging to the order Caudovirales. The various inter simple sequence repeat restriction patterns suggested that the five phages genetically are not similar, and similarity metrics analysis placed the five phages into two clusters.
The reported lytic activity of phages against Bt was as follows: BtØ7 (100%), BtØ9 (100%), BtØ3(83%), BtØ5(83%), and BtØ11(75%). Moreover, the phages were 17% more effective in lysing Bt than the commercial antibiotics.
Bt phages isolated from this study highlighted the importance of regular assessment of soil conditions and the lytic potentials of naturally occurring Bt phages to protect Bt sp from being attacked or destroyed, and to calculate the exact Bt dose concentration of successful application in pest control, this will enhance the environmental health, food security, and crop safety.
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Data Availability
All data sets are presented in the main manuscript.
Abbreviations
- Bt:
-
Bacillus thuringiensis
- ICP:
-
Insecticidal crystal protein
- CFU:
-
Colony-forming unit
- SM:
-
Sodium chloride, Magnesium sulfate, and gelatin used for routine manipulation of phage suspensions
- %:
-
Percent
- LB:
-
Luria broth
- NA:
-
Nutrient Agar
- Hrs:
-
Hours
- ISSRs:
-
Inter simple sequence repeats
References
Abo-senna ASM (2017) Occurrence of Bacillus thuringensis bacteriophages in the egyptian Arid Soil. Int J Virol Mol Biol 6:1–8. https://doi.org/10.5923/j.ijvmb.20170601.01
Ackermann HW (1998) Tailed bacteriophages: the order caudovirales. Adv Virus Res 51:135–201. https://doi.org/10.1016/S0065-3527(08)60785-X
Alič Å, Naglič T, Tušek-Žnidarič M, Ravnikar M, Racki N, Peterka M, Dreo T (2017) Newly isolated bacteriophages from the Podoviridae, Siphoviridae, and Myoviridae families have variable effects on putative novel Dickeya spp. Front Microbiol 8:1–14. https://doi.org/10.3389/fmicb.2017.01870
Assefa K, Merker A, Tefera H (2003) Inter simple sequence repeat (ISSR) analysis of genetic diversity in tef [Eragrostis tef (Zucc.) Trotter]. Hereditas 139:174–183. https://doi.org/10.1111/j.1601-5223.2003.01800.x
Balouiri M, Sadiki M, Ibnsouda SK (2016) Methods for in vitro evaluating antimicrobial activity: a review. J Pharm Anal 6:71–79. https://doi.org/10.1016/j.jpha.2015.11.005
Bauer AW, Kirby WM, Sherris JC, Turk M (1966) Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 36:45–52
Chaudhary V, Kumar M, Sharma S, Kumar N, Kumar V, Yadav HK, Sharma S, Sirohi U (2018) Assessment of genetic diversity and population structure in gladiolus (Gladiolus hybridus Hort.) By ISSR markers. Physiol Mol Biol Plants 24:493–501. https://doi.org/10.1007/s12298-018-0519-2
Duyvejonck H, Merabishvili M, Vaneechoutte M, de Soir S, Wright R, Friman V-P, Verbeken G, De Vos D, Pirnay J-P, Van Mechelen E, Vermeulen SJT (2021) Evaluation of the stability of bacteriophages in different solutions suitable for the production of magistral preparations in Belgium. Viruses 13:865. https://doi.org/10.3390/v13050865
Elmaghraby I, Carimi F, Sharaf A, Marei EM, Hammad AMM (2015) Isolation and identification of Bacillus megaterium bacteriophages via AFLP technique. Curr Res Bacteriol 8:77–89. https://doi.org/10.3923/crb.2015.77.89
Fokine A, Rossmann MG (2014) Molecular architecture of tailed double-stranded DNA phages. Bacteriophage 4:e28281. https://doi.org/10.4161/bact.28281
Göller P, Elsener T, Lorgé D, Radulovic N, Bernardi V, Naumann A, Amri N, Khatchatourova E, Coutinho FH, Loessner MJ, Gómez-Sanz E (2021) Multi-species host range of staphylococcal phages isolated from wastewater. Nat Commun 12:1–17. https://doi.org/10.1038/s41467-021-27037-6
Hassan AA, Youssef MA, Elashtokhy MMA, Ismail IM, Aldayel M, Afkar E (2021) Isolation and identification of Bacillus thuringiensis strains native of the Eastern Province of Saudi Arabia. Egypt J Biol Pest Control 31:6. https://doi.org/10.1186/s41938-020-00352-8
Hyman P (2019) Phages for phage therapy: isolation, characterization, and host range breadth. Pharmaceuticals 12:35. https://doi.org/10.3390/ph12010035
Ibrahim MA, Griko N, Junker M, Bulla LA (2010) Bacillus thuringiensis A genomics and proteomics perspective. Bioeng Bugs 1:31–50. https://doi.org/10.4161/bbug.1.1.10519
Kati H, Sezen K, Nalcacioglu R, Demirbag Z (2007) A highly pathogenic strain of Bacillus thuringiensis serovar kurstaki in lepidopteran pests. J Microbiol 45:553–557
Linares R, Arnaud CA, Degroux S, Schoehn G, Breyton C (2020) Structure, function, and assembly of the long, flexible tail of siphophages. Curr Opin Virol 45:34–42. https://doi.org/10.1016/J.COVIRO.2020.06.010
Mayneris-Perxachs J, Castells-Nobau A, Arnoriaga-Rodríguez M, Garre-Olmo J, Puig J, Ramos R, Martínez-Hernández F, Burokas A, Coll C, Moreno-Navarrete JM, Zapata-Tona C, Pedraza S, Pérez-Brocal V, Ramió-Torrentà L, Ricart W, Moya A, Martínez-García M, Maldonado R, Fernández-Real JM (2022) Caudovirales bacteriophages are associated with improved executive function and memory in flies, mice, and humans. Cell Host Microbe 30:340–356e8. https://doi.org/10.1016/j.chom.2022.01.013
Mohammed-Ali MN, Jamalludeen M N (2016) Isolation and characterization of bacteriophage against Methicillin-Resistant Staphylococcus aureus. J Med Microbiol Diagnosis 05:1–6. https://doi.org/10.4172/2161-0703.1000213
Newman M, Strzelecka T, Dorner LF, Schildkraut IAA (1995) Structure of bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding. Science 269:656–663. https://doi.org/10.1126/SCIENCE.7624794
Palma L, Muñoz D, Berry C, Murillo J, Caballero P (2014) Bacillus thuringiensis toxins: an overview of their biocidal activity. Toxins (Basel) 6:3296–3325. https://doi.org/10.3390/toxins6123296
Phumkhachorn P, Rattanachaikunsopon P (2015) A Siphoviridae bacteriophage specific to extended-spectrum β-lactamases-producing Escherichia coli. J Chem Pharm Res 7:604–608
Pinheiro DH, Valicente FH (2021) Identification of Bacillus thuringiensis strains for the management of Lepidopteran Pests. Neotrop Entomol 50:804–811. https://doi.org/10.1007/s13744-021-00896
Purayil FT, Robert GA, Gothandam KM, Kurup SS, Subramaniam S, Cheruth AJ (2018) Genetic variability in selected date palm (Phoenix dactylifera L.) cultivars of United Arab Emirates using ISSR and DAMD markers. 3 Biotech 8:1–8. https://doi.org/10.1007/s13205-018-1108-3
Ramirez K, Cazarez-Montoya C, Lopez-Moreno HS, Castro-del Campo N (2018) Bacteriophage cocktail for biocontrol of Escherichia coli O157:H7: Stability and potential allergenicity study. PLoS ONE 13:1–19. https://doi.org/10.1371/journal.pone.0195023
Romero-Calle D, Benevides RG, Góes-Neto A, Billington C (2019) Bacteriophages as alternatives to antibiotics in clinical care. Antibiotics 8. https://doi.org/10.3390/antibiotics8030138
Sanahuja G, Banakar R, Twyman RM, Capell TCP (2011) Bacillus thuringiensis: a century of research, development and commercial applications. Plant Biotechnol J 9:283–300. https://doi.org/10.1111/j.1467-7652.2011.00595.x
Shende RK, Hirpurkar SD, Sannat C, Rawat N, Pandey V (2017) Isolation and characterization of bacteriophages with lytic activity against common bacterial pathogens. Vet World 10:973–978. https://doi.org/10.14202/vetworld.2017.973-978
Tom EF, Molineux IJ, Paff ML, Bull JJ (2018) Experimental evolution of UV resistance in a phage. PeerJ 2018:1–20. https://doi.org/10.7717/peerj.5190
Topka G, Bloch S, Nejman-Faleńczyk B, Gąsior T, Jurczak-Kurek A, Necel A, Dydecka A, Richert M, Węgrzyn G, Węgrzyn A (2019) Characterization of bacteriophage vB-EcoS-95, isolated from urban sewage and revealing extremely rapid lytic development. Front Microbiol 10:1–15. https://doi.org/10.3389/fmicb.2018.03326
Turabik M, Oturan N, Gözmen B, Oturan MA (2014) Efficient removal of insecticide “imidacloprid” from water by electrochemical advanced oxidation processes. Environ Sci Pollut Res 21:8387–8397. https://doi.org/10.1007/s11356-014-2788-9
Wang Z, Zheng P, Ji W, Fu Q, Wang H, Yan Y, Sun J (2016) SLPW: a virulent bacteriophage targeting methicillin-resistant staphylococcus aureus in vitro and in vivo. Front Microbiol 7:1–10. https://doi.org/10.3389/fmicb.2016.00934
Wdowiak M, Paczesny J, Raza S (2022) Enhancing the Stability of Bacteriophages using physical, Chemical, and Nano-Based approaches: a review. Pharmaceutics 14. https://doi.org/10.3390/pharmaceutics14091936
Wen C, Ai C, Lu S, Yang Q, Liao HZS (2022) Isolation and characterization of the Lytic Pseudoxanthomonas kaohsiungensi Phage PW916. Viruses 14:1–12. https://doi.org/10.3390/v14081709
White K, Yu J-H, Eraclio G, Dal Bello F, Nauta A, Mahony J, van Sinderen D (2022) Bacteriophage-host interactions as a platform to establish the role of phages in modulating the microbial composition of fermented foods. Microbiome Res Rep 1–19. https://doi.org/10.20517/mrr.2021.04
Yang M, Liang Y, Huang S, Zhang J, Wang J, Chen H, Ye Y, Gao X, Wu1 Q, Tan Z (2020) Isolation and characterization of the Novel Phages vB_VpS_BA3 and vB_VpS_CA8 for lysing Vibrio parahaemolyticus. Front Microbiol 11:1–13. https://doi.org/10.3389/fmicb.2020.00259
Yuan Y, Peng Q, Yang S, Zhang S, Fu Y, Wu Y, Gao M (2018) Isolation of a novel Bacillus thuringiensis phage representing a new phage lineage and characterization of its endolysin. Viruses 10:v10110611. https://doi.org/10.3390/v10110611
Zhu L, Chu Y, Zhang B, Yuan X, Wang K, Liu Z, Sun M (2022) Creation of an industrial Bacillus thuringiensis strain with high melanin production and UV tolerance by Gene Editing. Front Microbiol 13:1–7. https://doi.org/10.3389/fmicb.2022.913715
Zinke M, Schröder GF, Lange A (2022) Major tail proteins of bacteriophages of the order Caudovirales. J Biol Chem 298:101472. https://doi.org/10.1016/j.jbc.2021.101472
Acknowledgements
We thank Dr. Rashid I. H. Ibrahim, Department of Biological Sciences, College of Science, King Faisal University, Saudi Arabia for proofreading the manuscript and language editing.
Funding
This work was supported by the Deanship of Scientific Research, Vice Presidency for Graduate Studies and Scientific Research, King Faisal University, Saudi Arabia [Project No. GRANT2435].
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A.A.H. planned, designed, and executed the experimental work of phage isolation & characterization, and wrote the preliminary results. I.M. constructed the experiments of gene typing using ISSRs-PCR analysis. E.A. set the work idea, revised the results, wrote, peer viewed, edited the manuscript in its ready-to-publish version, and landed the grant to support this work. All authors have read and agreed to the published version of the manuscript.
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Hassan, A.A., Mohamed, I. & Afkar, E. Characterization of Bacillus thuringiensis bacteriophages: morphogenesis, lytic potentials and inter simple sequence repeat analysis. Biologia 78, 3625–3635 (2023). https://doi.org/10.1007/s11756-023-01501-8
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DOI: https://doi.org/10.1007/s11756-023-01501-8