Abstract
Rotylenchus brevicaudatus was identified morphologically from soil samples collected around the rhizosphere of wild grass in the North West Province of Botswana. This species is characterized by a rounded lip region bearing four incisures, with slight depression. The basal annuli are divided into six to seven blocks in the ventral view. Tail is rounded with 8–14 μm length, stylet is 21–23 μm in length, spicules 25–26 μm, and gubernaculum 9–11 μm long. The nblast analysis based on the D2-D3 segment of 28S rDNA revealed 96% identity of the Botswanan populations of R. brevicaudatus to the Australian R. brevicaudatus (JX015419, JX015420). The phylogenetic analysis put the Botswanan and Australian population of R. brevicaudatus with a 1.00 posterior probability support. This is the first record of R. brevicaudatus in Botswana. In addition, SEM photographs of R. brevicaudatus are provided for the first time.
Similar content being viewed by others
References
Abolafia J (2015) A low-cost technique to manufacture a container to process meiofauna for scanning electron microscopy. Microsc Res Tech 78:771–776. https://doi.org/10.1002/jemt.22538
Abolafia J, Peña-Santiago R (2017) On the identity of Chiloplacus magnus Rashid and Heyns, 1990 and C. insularis Orselli and Vinciguerra, 2002 (Rhabditida: Cephalobidae), two confusable species. Nematology 19:1017–1034. https://doi.org/10.1163/15685411-00003104
Baermann G (1917) Eine einfache Methode zur Auffindung von Ankylostomum (Nematoden) Larven in Erdproben. Geneeskunding Tijdschrift voor Nederlandsch-Indië 57:131–137
Cantalapiedra-Navarrete C, Navas-Cortés JA, Liébanas G, Vovlas N, Subbotin SA, Palomares-Rius JE, Castillo P (2013) Comparative molecular and morphological characterisations in the nematode genus Rotylenchus: Rotylenchus paravitis n. sp., an example of cryptic speciation. Zool Anz 252:246–268. https://doi.org/10.1016/j.jcz.2012.08.002
Castillo P, Vovlas N (2005) Bionomics and identification of the genus Rotylenchus (Nematoda: Hoplolaimidae). Brill Academic, Leiden
Colbran RC (1962) Studies of plant and soil nematodes. 5. Four new species of Tylenchoidea from Queensland Pineapple Fields. Queens J Agric Sci 19:231–239
Darriba D, Taboada GL, Doallo R, Posada D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9:772. https://doi.org/10.1038/nmeth.2109
De Bruin S (1992) Taxonomic studies on nematodes from Botswana and the Mononchida of the southern Africa. Ph.D. thesis, University of Johannesburg, South Africa, 299 pp
De Grisse A (1969) Redescription ou modifications de quelques techniques utililisés dans l’étude des nématodes phytoparasitaires. Mededelingen van de Rijksfaculteit Landbouwetenschappen Gent 34:351–369
De Ley P, Felix MA, Frisse LM, Nadler SA, Sternberg PW, Thomas WK (1999) Molecular and morphological characterisation of two reproductively isolated species with mirror-image anatomy (Nematoda: Cephalobidae). Nematology 2:591–612. https://doi.org/10.1163/156854199508559
De Man JG (1876) Onderzoekingen over vrij in de aarde levende Nematoden. Tijdschrift der Nederlandsche Dierkundige Vereeniging 2:78–196
De Man JG (1881) Die einheimischen, frei in der reinen Erde und im süssen Wasser lebenden Nematoden. Vorläufiger Bericht und descriptiv-systematischer Theil. Tijdschrift nederlandsche Dierkundige Vereeniging 5 (1880):1–104. https://biostor.org/reference/109493
Guindon S, Gascuel O (2003) A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Syst Biol 52:696–704. https://doi.org/10.1080/10635150390235520
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/ 98NT. Nucl Acids Symp Series 41:95–98
Nguyen T, Trinh P, Coureur M, Singh R, Decraemer W, Bert W (2019) Description of Rotylenchus rhomboides n. sp. and a Belgian population of Rotylenchus buxophilus (Tylenchomorpha: Hoplolaimidae). J Nematol 51:1–20. https://doi.org/10.21307/jofnem-2019-023
Procter DLC (2012) Soil-living nematodes of a savanna community in Botswana: A preliminary report. J Arid Environ 76:142–146. https://doi.org/10.1016/j.jaridenv.2011.08.001
Ronquist F, Huelsenbeck J (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574. https://doi.org/10.1093/bioinformatics/btg180
Shokoohi E (2021) Morphological and molecular characterisation of Boleodorus volutus Lima & Siddiqi, 1963 from South Africa with the first SEM observations of the species. Russ J Nematol 29:101–109. https://doi.org/10.24412/0869-6918-2021-2-101-109
Straube D, Juen A (2013) Storage and shipping of tissue samples for DNA analyses: A case study on earthworms. Eur J Soil Biol 57:13–18. https://doi.org/10.1016/j.ejsobi.2013.04.001
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22:4673–4680
Vovlas N, Subbotin SA, Troccoli A, Liébanas G, Castillo P (2008) Molecular phylogeny of the genus Rotylenchus (Nematoda, Tylenchida) and description of a new species. Zool Scripta 37:521–537. https://doi.org/10.1111/j.1463-6409.2008.00337.x
Acknowledgements
The authors thank the research support plans “PAIUJA 2019/2020: EI_RNM02_2019” and “POAIUJA 2021/2022: EI_RNM02_2021” of the University of Jaén, Spain. The SEM pictures were obtained with the assistance of technical staff (Amparo Martínez-Morales) and equipment of “Centro de Instrumentación Científico-Técnica (CICT)” from the University of Jaén. In addition, the authors acknowledge Aquaculture Research Unit for the microscopical facilities.
Funding
This study was financially supported by the University of Jaén (Spain) for the SEM photographs. The rest of the project was supported by ES.
Author information
Authors and Affiliations
Contributions
ES conducted the study, identified the species and analysed the data, wrote and revised the manuscript. JA revised the manuscript and took the LM and SEM of the species. ES and JA contributed to the final draft of the manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflicts of interest.
Additional information
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Shokoohi, E., Abolafia, J. Observation on the Rotylenchus brevicaudatus Colbran, 1962 from Botswana, with the first SEM of the species. Biologia 77, 3501–3509 (2022). https://doi.org/10.1007/s11756-022-01240-2
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11756-022-01240-2