References
Ahuja RK, Hamacher HW (2005) A network flow algorithm to minimize beam-on time for unconstrained multileaf collimator problems in cancer radiation therapy. Networks 45(1):36–41
Aleman DM, Kumar A, Ahuja RK, Romeijn HE, Dempsey JF (2008a) Neighborhood search approaches to beam orientation optimization in intensity modulated radiation therapy treatment planning. J Glob Optim 42(4):587–607
Aleman DM, Romeijn HE, Dempsey JF (2008b) Beam orientation optimization methods in intensity modulated radiation therapy treatment planning. In: Lim GJ, Lee EK (eds) Optimization in medicine and biology. Taylor and Francis/Auerbach Publications, London, pp 223–251
Bednarz G, Michalski D, Anne PR, Valicenti RK (2004) A network flow algorithm to minimize beam-on time for unconstrained multileaf collimator problems in cancer radiation therapy. Phys Med Biol 49:2503–2514
Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 57:289–300
Benjamini Y, Yekutieli D (2001) The control of the false discovery rate in multiple testing under dependency. Ann Stat 29:1165–1188
Censor Y, Ben-Israel A, Xiao Y, Galvin JM (2008) On linear infeasibility arising in intensity-modulated radiation therapy inverse planning. Linear Algebra Appl 428:1406–1420
Chaovalitwongse WA, Pardalos PM, Prokoyev OA (2006) Electroencephalogram (EEG) time series classification: applications in epilepsy. Ann Oper Res 148:227–250
Chaovalitwongse WA, Fan YJ, Sachdeo RC (2007) On the time series k-nearest neighbor for abnormal brain activity classification. IEEE Trans Syst Man Cybern, Part A, Syst Hum 37(6):1005–1016
Chaovalitwongse WA, Fan YJ, Sachdeo RC (2008) Novel optimization models for abnormal brain activity classification. Oper Res 56(6):1450–1460
Chen DZ, Wang C (2008) Optimal field splitting, with applications in intensity-modulated radiation therapy. In: FAW ’08: proceedings of the 2nd annual international workshop on frontiers in algorithmics. Springer, Berlin, pp 4–15
D’Alessandro M, Esteller R, Vachtsevanos G, Hinson A, Echauz J, Litt B (2003) Epileptic seizure prediction using hybrid feature selection over multiple intracranial EEG electrode contacts: a report of four patients. IEEE Trans Biom Eng 50:603–615
D’Souza WD, Meyer RR, Thomadsen BR, Ferris MC (2001) An iterative sequential mixed-integer approach to automated prostate brachytherapy treatment plan optimization. Phys Med Biol 46:297–322
D’Souza WD, Meyer RR, Shi L (2004) Selection of beam orientations in intensity-modulated radiation therapy using single-beam indices and integer programming. Phys Med Biol 49:3465–3481
Dudoit S, Shaffer JP, Boldrick JC (2003) Multiple hypothesis testing in microarray experiments. Stat Sci 18:71–103
Efron B, Tibshirani R, Storey JD, Tusher VG (2001) Bayes analysis of a microarray experiment. J Am Stat Assoc 96:1151–1160
Good LB (2007) Automated seizure prediction and control in a rat model of chronic epilepsy. PhD thesis, Arizona State University
Guez A, Vincent R, Avoli M, Pineau J (2008) Adaptive treatment of epilepsy via batch-mode reinforcement learning. In: Proceedings of the 20th conference on innovative applications of artificial intelligence
Guo X, Qi H, Verfaillie C, Pan W (2003) Statistical significance analysis of longitudinal gene expression data. Bioinformatics 19:1628–1635
Iasemidis LD (2003) Epileptic seizure prediction and control. IEEE Trans Biomed Eng 50:549–558
Iasemidis LD, Sackellares JC (1991) The evolution with time of the spatial distribution of the largest Lyapunov exponent on the human epileptic cortex. In: Duke D, Pritchard W (eds) Measuring chaos in the human brain. World Scientific, Singapore, pp 49–82
Ichinose F, Miyazaki M, Goto T, Takahashi H, Terui K, Niimi Y, Uezono S, Morita S, Yanagida H (1999) Electroencephalographic responses to the formalin test in rats. Pain 80:251–256
Jain AK, Duin RPW, Mao J, (2000) Statistical pattern recognition: a review. IEEE Trans Pattern Anal Mach Intell 20:4–37
Kim SB (2008) Features extraction and selection in high-dimensional spectral data. In: Wang J (ed) Encyclopedia of data warehousing and mining, 2nd edn. IGI Global, Hershey, pp 863–869
Koh TS, Jezioranski JJ, Haycocks T, Tong S, Heaton R, Yeung I (2001) A practical approach to inverse planning for high-precision dose escalated conformal prostate radiotherapy. Phys Med Biol 46:1473–1485
Landau AN, Esterman M, Robertson LC, Bentin S, Prinzmetal W (2007) Different effects of voluntary and involuntary attention on EEG activity in the gamma band. J Neurosci 27:11986–11990
Lee EK, Gallagher RJ, Silvern D, Wuu C-S, Zaider M (1999) Treatment planning for brachytherapy: an integer programming model, two computational approaches and experiments with permanent prostate implant planning. Phys Med Biol 44:145–165
Lee EK, Fox T, Crocker I (2003) Integer programming applied to intensity-modulated radiation therapy treatment planning. Ann Oper Res 119:165–181
Lee EK, Fox T, Crocker I (2006) Simultaneous beam geometry and intensity map optimization in intensity-modulated radiation therapy. Int J Radiat Oncol Biol Phys 64(1):301–320
Liu C-C (2008) Brain dynamics, system control and optimization techniques with applications in epilepsy. PhD thesis, University of Florida
Meyer RR, D’Souza WD, Ferris MC, Thomadsen BR (2003) MIP models and BB strategies in brachytherapy treatment optimization. J Glob Optim 25(1):23–42
Mormann F, Andrzejak RG, Kreuz T, Rieke C, David P, Elger C, Lehnertz K (2003) Automated detection of a pre-seizure state based on a decrease in synchronization in intracranial EEG recordings from epilepsy patients. Phys Rev E 67(2):021912
Mormann F, Kreuz T, Rieke C, Andrzejak RGAK, David P (2005) On the predictability of epileptic seizures. Clin Neurophysiol 116:569–587
Murphy SA (2003) Optimal dynamic treatment regimes. J R Stat Soc, Ser B 65(2):331–366
Nair SP (2006) Brain dynamics and control with applications in epilepsy. PhD thesis, University of Florida
Park T, Yi S-G, Lee S, Lee SY, Yoo D-H, Ahn J-I, Lee Y-S (2003) Statistical tests for identifying differentially expressed genes in time-course microarray experiments. Bioinformatics 19:694–703
Reiner A, Yekutieli D, Benjamini Y (2003) Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics 19:368–375
Romeijn HE, Ahuja RK, Dempsey JF, Kumar A (2006) A new linear programming approach to radiation therapy treatment planning problems. Oper Res 54(2):201–216
Sabesan S (2008) Spatiotemporal brain dynamics in epilepsy: application to seizure prediction and focus localization. PhD thesis, Arizona State University
Schachter CS, Schmidt D (2003) Vagus nerve stimulation, 2nd edn. Informa HealthCare, London
Singh V, Mukherjee L, Xu J, Hoffmann KR, Dinu PM, Podgorsak M (2007) Brachytherapy seed localization using geometric and linear programming techniques. IEEE Trans Med Imag 26(9):1291–1304
Snyder DE, Echauz J, Grimes DB, Litt B (2008) The statistics of a practical seizure warning system. J Neur Eng 5:392–401
Sonderman D, Abrahamson PG (1985) Radiotherapy treatment design using mathematical programming models. Oper Res 33(4):705–725
Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of microarray applied to the ionizing radiation response. Proc Nat Acad Sci 98:5116–5121
Wake GMGH, Boland N, Jennings LS (2009) Radiotherapy treatment design using mathematical programming models. Comput Oper Res 36:795–810
Wang C, Dai J, Hu Y (2003) Optimization of beam orientations and beam weights for conformal radiotherapy using mixed integer programming. Phys Med Biol 48:4065–4076
Yang R, Dai J, Yang Y, Hu Y (2006) Beam orientation optimization for intensity-modulated radiation therapy using mixed integer programming. Phys Med Biol 51:3653–3666
Yoo S, Kowalok ME, Thomadsen BR, Henderson DL (2003) Treatment planning for prostate brachytherapy using region of interest adjoint functions and a greedy heuristic. Phys Med Biol 48:4077–4090
Yoo S, Kowalok ME, Thomadsen BR, Henderson DL (2007) A greedy heuristic using adjoint functions for the optimization of seed and needle configurations in prostate seed implant. Phys Med Biol 52:815–828
Yuan M (2006) Flexible temporal expression profile modeling using the Gaussian process. Comput Stat Data Anal 51:1754–1764
Zaider M, Zelefsky MJ, Lee EK, Zakian KL, Amols HI, Dyke J, Cohen G, Hu Y, Endi AK, Chui C, Koutcher JA (2000) Treatment planning for prostate implants using magnetic-resonance spectroscopy imaging. Int J Radiat Oncol Biol Phys 47(4):1085–1096
Zinchenko Y, Craig T, Keller H, Terlaky T, Sharpe M (2008) Controlling the dose distribution with gEUD-type constraints within the convex radiotherapy optimization framework. Phys Med Biol 53:3231–3250
Author information
Authors and Affiliations
Corresponding author
Additional information
This comment refers to the invited paper available at: doi:10.1007/s11750-009-0124-1.
Rights and permissions
About this article
Cite this article
Chen, V.C.P., Kim, S.B. & Rosenberger, J.M. Comments on: Optimization and data mining in medicine. TOP 17, 240–246 (2009). https://doi.org/10.1007/s11750-009-0128-x
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11750-009-0128-x