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Comments on: Optimization and data mining in medicine

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References

  • Ahuja RK, Hamacher HW (2005) A network flow algorithm to minimize beam-on time for unconstrained multileaf collimator problems in cancer radiation therapy. Networks 45(1):36–41

    Article  Google Scholar 

  • Aleman DM, Kumar A, Ahuja RK, Romeijn HE, Dempsey JF (2008a) Neighborhood search approaches to beam orientation optimization in intensity modulated radiation therapy treatment planning. J Glob Optim 42(4):587–607

    Article  Google Scholar 

  • Aleman DM, Romeijn HE, Dempsey JF (2008b) Beam orientation optimization methods in intensity modulated radiation therapy treatment planning. In: Lim GJ, Lee EK (eds) Optimization in medicine and biology. Taylor and Francis/Auerbach Publications, London, pp 223–251

    Google Scholar 

  • Bednarz G, Michalski D, Anne PR, Valicenti RK (2004) A network flow algorithm to minimize beam-on time for unconstrained multileaf collimator problems in cancer radiation therapy. Phys Med Biol 49:2503–2514

    Article  Google Scholar 

  • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 57:289–300

    Google Scholar 

  • Benjamini Y, Yekutieli D (2001) The control of the false discovery rate in multiple testing under dependency. Ann Stat 29:1165–1188

    Article  Google Scholar 

  • Censor Y, Ben-Israel A, Xiao Y, Galvin JM (2008) On linear infeasibility arising in intensity-modulated radiation therapy inverse planning. Linear Algebra Appl 428:1406–1420

    Article  Google Scholar 

  • Chaovalitwongse WA, Pardalos PM, Prokoyev OA (2006) Electroencephalogram (EEG) time series classification: applications in epilepsy. Ann Oper Res 148:227–250

    Article  Google Scholar 

  • Chaovalitwongse WA, Fan YJ, Sachdeo RC (2007) On the time series k-nearest neighbor for abnormal brain activity classification. IEEE Trans Syst Man Cybern, Part A, Syst Hum 37(6):1005–1016

    Article  Google Scholar 

  • Chaovalitwongse WA, Fan YJ, Sachdeo RC (2008) Novel optimization models for abnormal brain activity classification. Oper Res 56(6):1450–1460

    Article  Google Scholar 

  • Chen DZ, Wang C (2008) Optimal field splitting, with applications in intensity-modulated radiation therapy. In: FAW ’08: proceedings of the 2nd annual international workshop on frontiers in algorithmics. Springer, Berlin, pp 4–15

    Google Scholar 

  • D’Alessandro M, Esteller R, Vachtsevanos G, Hinson A, Echauz J, Litt B (2003) Epileptic seizure prediction using hybrid feature selection over multiple intracranial EEG electrode contacts: a report of four patients. IEEE Trans Biom Eng 50:603–615

    Article  Google Scholar 

  • D’Souza WD, Meyer RR, Thomadsen BR, Ferris MC (2001) An iterative sequential mixed-integer approach to automated prostate brachytherapy treatment plan optimization. Phys Med Biol 46:297–322

    Article  Google Scholar 

  • D’Souza WD, Meyer RR, Shi L (2004) Selection of beam orientations in intensity-modulated radiation therapy using single-beam indices and integer programming. Phys Med Biol 49:3465–3481

    Article  Google Scholar 

  • Dudoit S, Shaffer JP, Boldrick JC (2003) Multiple hypothesis testing in microarray experiments. Stat Sci 18:71–103

    Article  Google Scholar 

  • Efron B, Tibshirani R, Storey JD, Tusher VG (2001) Bayes analysis of a microarray experiment. J Am Stat Assoc 96:1151–1160

    Article  Google Scholar 

  • Good LB (2007) Automated seizure prediction and control in a rat model of chronic epilepsy. PhD thesis, Arizona State University

  • Guez A, Vincent R, Avoli M, Pineau J (2008) Adaptive treatment of epilepsy via batch-mode reinforcement learning. In: Proceedings of the 20th conference on innovative applications of artificial intelligence

  • Guo X, Qi H, Verfaillie C, Pan W (2003) Statistical significance analysis of longitudinal gene expression data. Bioinformatics 19:1628–1635

    Article  Google Scholar 

  • Iasemidis LD (2003) Epileptic seizure prediction and control. IEEE Trans Biomed Eng 50:549–558

    Article  Google Scholar 

  • Iasemidis LD, Sackellares JC (1991) The evolution with time of the spatial distribution of the largest Lyapunov exponent on the human epileptic cortex. In: Duke D, Pritchard W (eds) Measuring chaos in the human brain. World Scientific, Singapore, pp 49–82

    Google Scholar 

  • Ichinose F, Miyazaki M, Goto T, Takahashi H, Terui K, Niimi Y, Uezono S, Morita S, Yanagida H (1999) Electroencephalographic responses to the formalin test in rats. Pain 80:251–256

    Article  Google Scholar 

  • Jain AK, Duin RPW, Mao J, (2000) Statistical pattern recognition: a review. IEEE Trans Pattern Anal Mach Intell 20:4–37

    Article  Google Scholar 

  • Kim SB (2008) Features extraction and selection in high-dimensional spectral data. In: Wang J (ed) Encyclopedia of data warehousing and mining, 2nd edn. IGI Global, Hershey, pp 863–869

    Google Scholar 

  • Koh TS, Jezioranski JJ, Haycocks T, Tong S, Heaton R, Yeung I (2001) A practical approach to inverse planning for high-precision dose escalated conformal prostate radiotherapy. Phys Med Biol 46:1473–1485

    Article  Google Scholar 

  • Landau AN, Esterman M, Robertson LC, Bentin S, Prinzmetal W (2007) Different effects of voluntary and involuntary attention on EEG activity in the gamma band. J Neurosci 27:11986–11990

    Article  Google Scholar 

  • Lee EK, Gallagher RJ, Silvern D, Wuu C-S, Zaider M (1999) Treatment planning for brachytherapy: an integer programming model, two computational approaches and experiments with permanent prostate implant planning. Phys Med Biol 44:145–165

    Article  Google Scholar 

  • Lee EK, Fox T, Crocker I (2003) Integer programming applied to intensity-modulated radiation therapy treatment planning. Ann Oper Res 119:165–181

    Article  Google Scholar 

  • Lee EK, Fox T, Crocker I (2006) Simultaneous beam geometry and intensity map optimization in intensity-modulated radiation therapy. Int J Radiat Oncol Biol Phys 64(1):301–320

    Google Scholar 

  • Liu C-C (2008) Brain dynamics, system control and optimization techniques with applications in epilepsy. PhD thesis, University of Florida

  • Meyer RR, D’Souza WD, Ferris MC, Thomadsen BR (2003) MIP models and BB strategies in brachytherapy treatment optimization. J Glob Optim 25(1):23–42

    Article  Google Scholar 

  • Mormann F, Andrzejak RG, Kreuz T, Rieke C, David P, Elger C, Lehnertz K (2003) Automated detection of a pre-seizure state based on a decrease in synchronization in intracranial EEG recordings from epilepsy patients. Phys Rev E 67(2):021912

    Article  Google Scholar 

  • Mormann F, Kreuz T, Rieke C, Andrzejak RGAK, David P (2005) On the predictability of epileptic seizures. Clin Neurophysiol 116:569–587

    Article  Google Scholar 

  • Murphy SA (2003) Optimal dynamic treatment regimes. J R Stat Soc, Ser B 65(2):331–366

    Article  Google Scholar 

  • Nair SP (2006) Brain dynamics and control with applications in epilepsy. PhD thesis, University of Florida

  • Park T, Yi S-G, Lee S, Lee SY, Yoo D-H, Ahn J-I, Lee Y-S (2003) Statistical tests for identifying differentially expressed genes in time-course microarray experiments. Bioinformatics 19:694–703

    Article  Google Scholar 

  • Reiner A, Yekutieli D, Benjamini Y (2003) Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics 19:368–375

    Article  Google Scholar 

  • Romeijn HE, Ahuja RK, Dempsey JF, Kumar A (2006) A new linear programming approach to radiation therapy treatment planning problems. Oper Res 54(2):201–216

    Article  Google Scholar 

  • Sabesan S (2008) Spatiotemporal brain dynamics in epilepsy: application to seizure prediction and focus localization. PhD thesis, Arizona State University

  • Schachter CS, Schmidt D (2003) Vagus nerve stimulation, 2nd edn. Informa HealthCare, London

    Google Scholar 

  • Singh V, Mukherjee L, Xu J, Hoffmann KR, Dinu PM, Podgorsak M (2007) Brachytherapy seed localization using geometric and linear programming techniques. IEEE Trans Med Imag 26(9):1291–1304

    Article  Google Scholar 

  • Snyder DE, Echauz J, Grimes DB, Litt B (2008) The statistics of a practical seizure warning system. J Neur Eng 5:392–401

    Google Scholar 

  • Sonderman D, Abrahamson PG (1985) Radiotherapy treatment design using mathematical programming models. Oper Res 33(4):705–725

    Article  Google Scholar 

  • Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of microarray applied to the ionizing radiation response. Proc Nat Acad Sci 98:5116–5121

    Article  Google Scholar 

  • Wake GMGH, Boland N, Jennings LS (2009) Radiotherapy treatment design using mathematical programming models. Comput Oper Res 36:795–810

    Article  Google Scholar 

  • Wang C, Dai J, Hu Y (2003) Optimization of beam orientations and beam weights for conformal radiotherapy using mixed integer programming. Phys Med Biol 48:4065–4076

    Article  Google Scholar 

  • Yang R, Dai J, Yang Y, Hu Y (2006) Beam orientation optimization for intensity-modulated radiation therapy using mixed integer programming. Phys Med Biol 51:3653–3666

    Article  Google Scholar 

  • Yoo S, Kowalok ME, Thomadsen BR, Henderson DL (2003) Treatment planning for prostate brachytherapy using region of interest adjoint functions and a greedy heuristic. Phys Med Biol 48:4077–4090

    Article  Google Scholar 

  • Yoo S, Kowalok ME, Thomadsen BR, Henderson DL (2007) A greedy heuristic using adjoint functions for the optimization of seed and needle configurations in prostate seed implant. Phys Med Biol 52:815–828

    Article  Google Scholar 

  • Yuan M (2006) Flexible temporal expression profile modeling using the Gaussian process. Comput Stat Data Anal 51:1754–1764

    Article  Google Scholar 

  • Zaider M, Zelefsky MJ, Lee EK, Zakian KL, Amols HI, Dyke J, Cohen G, Hu Y, Endi AK, Chui C, Koutcher JA (2000) Treatment planning for prostate implants using magnetic-resonance spectroscopy imaging. Int J Radiat Oncol Biol Phys 47(4):1085–1096

    Google Scholar 

  • Zinchenko Y, Craig T, Keller H, Terlaky T, Sharpe M (2008) Controlling the dose distribution with gEUD-type constraints within the convex radiotherapy optimization framework. Phys Med Biol 53:3231–3250

    Article  Google Scholar 

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Correspondence to Victoria C. P. Chen.

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This comment refers to the invited paper available at: doi:10.1007/s11750-009-0124-1.

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Chen, V.C.P., Kim, S.B. & Rosenberger, J.M. Comments on: Optimization and data mining in medicine. TOP 17, 240–246 (2009). https://doi.org/10.1007/s11750-009-0128-x

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