Abstract
In this work an approach to the modeling of the biological membranes where a membrane is treated as a continuous medium is presented. The Nernst-Planck-Poisson model including Poisson equation for electric potential is used to describe transport of ions in the mitochondrial membrane—the interface which joins mitochondrial matrix with cellular cytosis. The transport of calcium ions is considered. Concentration of calcium inside the mitochondrion is not known accurately because different analytical methods give dramatically different results. We explain mathematically these differences assuming the complexing reaction inside mitochondrion and the existence of the calcium set-point (concentration of calcium in cytosis below which calcium stops entering the mitochondrion).
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J. Bobacka, A. Ivaska, and A. Lewenstam, Potentiometric Ion Sensors, Chem. Rev., 2008, 108(2), p 329–351
K. Krabbenhøft and J. Krabbenhøft, Application of the Poisson–Nernst–Planck Equations to the Migration Test, Cem. Concr. Res., 2008, 38, p 77–88
B. Roux, The Membrane Potential and Its Representation by a Constant Electric Field in Computer Simulations, Biophys. J., 2008, 95, p 4205–4216
C. Kutzner, H. Grubmuller, B.L. de Groot, and U. Zachariae, Computational Electrophysiology: The Molecular Dynamics of Ion Channel Permeation and Selectivity in Atomistic Detail, Biophys. J., 2011, 101, p 809–817
M. Jensen, W. Borhani, K. Lindorff-Larsen, P. Maragakis, V. Jogini, M.P. Eastwood, R.O. Dror, and D.E. Shaw, Principles of Conduction and Hydrophobic Gating in K+ Channels, Proc. Natl. Acad. Sci. USA, 2010, 107, p 5833–5838
A. Bidon-Chanal, E.-M. Krammer, D. Blot, E. Pebay-Peyroula, C. Chipot, S. Ravaud, and F. Dehez, How do Membrane Transporters Sense pH? The Case of the Mitochondrial ADP-ATP Carrier, J. Phys. Chem. Lett., 2013, 4, p 3787–3791
B. Roux, T. Allen, S. Berneche, and W. Im, Theoretical and Computational Models of Biological Ion Channels, Q. Rev. Biophys., 2004, 37(1), p 15–103
E.-M. Krammer, F. Homblé, and M. Prévost, Molecular origin of VDAC Selectivity Towards Inorganic Ions: A Combined Molecular and Brownian Dynamics Study, Biochem. Biophys. Acta, 2013, 1828, p 1284–1292
B. Corry, S. Kuyucak, and S.-H. Ghung, Dielectric Self-Energy in Poisson-Boltzmann and Poisson-Nernst-Planck Models of Ion Channels, Biophys. J., 2003, 84, p 3594–3606
R.S. Eisenberg, From Structure to Function in Open Ionic Channels, J. Membr. Biol., 1999, 171(1), p 1–24
I. Valent, P. Petrovič, P. Neogrády, I. Schreiber, and M. Marek, Electrodiffusion Kinetics of Ionic Transport in a Simple Membrane Channel, J. Phys. Chem. B, 2013, 117, p 14283–14293
B. Bożek, A. Lewenstam, K. Tkacz-Śmiech, and M. Danielewski, Electrochemistry of Symmetrical Ion Channel: Three-Dimensional Nernst-Planck-Poisson Model, ECS Trans., 2014, 61(15), p 11–20
R. Hansford, Relation Between Mitochondrial Calcium Transport and Control of Energy Metabolism, Rev. Physiol. Biochem. Pharmacol., 1985, 102, p 2–72
E. Carafoli, Intracellular Calcium Homeostasis, Ann. Rev. Biochem., 1987, 56, p 395–435
M. Crompton, Role of Mitochondria in Intracellular Calcium Regulation, Intracellular Calcium Regulation, F. Bronner, Ed, Alan R. Liss, New York, 1990, p 181–209.
J.G. McCormack, A.P. Halestrap, and R.M. Denton, Role of Calcium Ions in Regulation of Mammalian Intramitochondrial Metabolism, Physiol. Rev., 1990, 70(2), p 391–420
M.R. Duchen, MRCa(2+)-dependent changes in the mitochondrial energetics in single dissociated mouse sensory neurons, Biochem J., 1992, 283 (Part 1), p 41-50.
S.S. Kannurpatti, B.G. Sanganahalli, P. Herman, and F. Hyder, Role of Mitochondrial Calcium Uptake Homeostasis in Resting State fMRI, Brain Networks, NMR Biomed., 2015, 28(11), p 1579–1588
K. Dołowy, Warsaw University of Life Sciences - private communication 2010-2013.
H. Chang and G. Jaffé, Polarization in Electrolyte Solutions. Part I: Theory, J. Chem. Phys., 1952, 20, p 1071–1077
W.E. Morf, The Principles of Ion-Selective Electrodes and of Membrane Transport, 1st ed., Akadémiai Kiadó, Budapest, 1981, p 123
W.E. Schiesser, The Numerical Method of Lines: Integration of Partial Differential Equations, Math. Comput., 1993, 60(201), p 433–437
A.C. Hindmarsh, LSODE and LSODI, Two Initial Value Ordinary Differential Equation Solvers, ACM Signum Newslett., 1980, 15, p 10–11
W.E. Morf, E. Pretsch, and N.F. De Rooij, Theoretical Treatment and Numerical Simulation of Potential and Concentration Profiles in Extremely Thin Non-Electroneutral Membranes Used for Ion-Selective Electrodes, J. Electroanal. Chem., 2010, 641(1), p 45–56
Acknowledgments
This work has been financed by the AGH Grant No. 11.11.160.768. The authors would like to thank Professor Krzysztof Dołowy for inspiring this work and his valuable comments pertaining the simulations.
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This article is an invited submission to JMEP selected from presentations at the Symposium “Interface Design and Modelling,” belonging to the Topic “Joining and Interfaces” at the European Congress and Exhibition on Advanced Materials and Processes (EUROMAT 2015), held on September 20-24, 2015, in Warsaw, Poland, and has been expanded from the original presentation.
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Jasielec, J.J., Filipek, R., Szyszkiewicz, K. et al. Continuous Modeling of Calcium Transport Through Biological Membranes. J. of Materi Eng and Perform 25, 3285–3290 (2016). https://doi.org/10.1007/s11665-016-2160-y
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DOI: https://doi.org/10.1007/s11665-016-2160-y