Cell isolation and primary cell culture.
Primary cell cultures were established from mammary parenchymal tissue. Small pieces of the mammary tissue of Polish Holstein-Friesian cows were aseptically removed from the udder immediately following slaughter from individuals in various stages of their life (heifers, mid-lactation, involution). Tissue pieces were collected in 50-ml conical centrifuge tubes (BD Bioscience, San Jose, CA) with 1× DPBS (Gibco, Langley, OK), transported, and preserved at 4°C until cell isolation and modified primary cell culture (method as described by Huynh et al. 1991) was started. The mammary tissue pieces were washed twice with 1× DPBS (Gibco) before digestion. The tissue samples were minced using surgical scissors. Minced samples were incubated in aseptic Hank’s balanced salt solution (Gibco) for 1.5 h at 37°C. The prepared tissue was digested with trypsin–EDTA solution (Sigma-Aldrich, St. Louis, MO) for 1 h at 37°C. The digest was filtered through a nylon mesh (BD Bioscience, 100 μm) and the filtrate centrifuged for 10 min/1,250 rpm (Eppendorf 5804 R, Eppendorf, Hamburg, Germany). The cell inoculum was plated in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 20% FBS, insulin (1 μg/ml), amphoterycin B (2.5 μg/ml), and penicillin–streptomycin (50 IU/ml) on non-coated polystyrene Petri dishes with the surface modified for enhanced cell culture (BD Primaria™, 35 mm, BD Bioscience). Then, the cells were incubated in the incubator (Memmert GmbH+Co. KG, Schwabach, Germany) at 37°C, 5% CO2, 95% humidity for 2 h (pre-plating). After 2 h, DMEM was changed and in the fresh DMEM cells were maintained at 37°C in a humidified atmosphere of 5% CO2. The medium was changed every 2 d. The primary cell cultures were trypsinized at ~80% confluency (trypsin–EDTA 0.25% solution, Sigma-Aldrich) and passaged. The primary cell cultures were passaged on the tenth day of culture. Cells in the first passage were trypsinized on the seventh day of the culture. On the fourth day of culture, epithelial cells of the second and third passages were harvested. Cell cultures were visualized with a Nikon TS-100 microscope (NIS Elements F Package, camera Nikon DS-Fi1, Nikon, Melville, NY).
Single-cell cloning by serial dilution.
When the primary cell culture was established, the initial material was not homogenous. To solve this problem, the first passage was prepared by means of single-cell cloning by serial dilution, as described by Ryan (2005), in 96-well plates (Cell+, Sarstedt, Nümbrecht, Germany). The first passage was maintained at 37°C, 95% humidity, and 5% CO2. The cells in the first passage were trypsinized at ~80% confluency and transferred into 24-well plates (Cell+, Sarstedt). The cells of the second and third passages were used for further studies as experimental materials of high homogeneity.
Testing for Mycoplasma in cell cultures.
For Mycoplasma testing, cells were fixed and DAPI staining solution was used (Sigma-Aldrich). Microscope slides were prepared using Gel MountTM Aqueous Mounting Medium (Sigma-Aldrich). The slides were analyzed using a confocal laser microscope (Nikon Eclipse TE 2000-S). Molecular Mycoplasma tests through molecular analysis were performed with genomic DNA extraction from the culture media according to the method described by Wirth et al. (1994). For Mycoplasma species identification in the culture media, PCRs were prepared. The following species-specific primers (fragments of sequence of the Mycoplasma 16S rRNA gene) were used in PCR reaction to identify Mycoplasma species (e.g., Mycoplasma hyorhinis, Mycoplasma orale, Mycoplasma fermentas, Mycoplasma pirum) and species specific for Bovidae—Mycoplasma arginini and Acholeplasma laidlawii: F—5′-GGGAGCAAACAGGATTAGATACCCT-3′ (GPO3) and R—5′-TGCACCATCTGTCACTCTGTTAACCTC-3′ (MGSO; Kuppeveld et al. 1994; Kong et al. 2001). PCR amplicons were analyzed using horizontal electrophoresis through 2% agarose gel (Prona Agarose). Genomic DNA of Mycoplasma bovis was used as a positive control.
Morphological cell identification.
Cells from the primary cell cultures, i.e., the first, second, and third passages, were fixed for morphological and subcellular identification. Cells were fixed with 4% paraformaldehyde solution for 10 min and perforated with 70% methanol solution for 1 h (Sigma-Aldrich). For basic morphology analysis, the cell cultures were stained in 20% Giemsa solution for 8 min and propidium iodine solution (0.6 μg/ml) for 5 min (Sigma-Aldrich). For standard morphological study, epithelial cells were prepared on the tenth day of culture. On the 14th day of cell culture, living and fixed cells were taken only for dome structure analysis.
Immunocytochemistry.
The presence of cytokeratin (Moll et al. 1982) in cultured cells was investigated using monoclonal antibodies. First, the cells were incubated with the primary monoclonal antibody (1:300 in DPBS) for 1 h (Monoclonal Anty-Pan Cytokeratin, Sigma-Aldrich). In the second step, two visualization systems were used. The first method used DakoCytomation EnVison+ System-HRP (30-min incubation with 2% solution; Dako, Glostrup, Denmark), and subsequently the slides were visualized with Nikon NIS Elements Basic Research package (Nikon Eclipse E-200). The second method used fluorescein isothiocyanate (FITC)-labeled anti-mouse IgG antibody (1:30 in DPBS) for 30 min (Anti-mouse IGG, Fab specific, Sigma-Aldrich) with DAPI solution (10 μm/ml for 10 min for cell nuclei localization; Sigma-Aldrich) and the slides imaged with a confocal laser microscope (Nikon Eclipse TE 2000-S).
RNA isolation and reverse transcription reaction.
For gene expression analysis, total RNA was isolated from mammary gland tissues and cell cultures. The small tissue fragments were placed in RNAlater® (Sigma-Aldrich) and preserved at 4°C until total RNA isolation. Cell cultures for total RNA isolation were washed with 1× DPBS (Gibco) and removed from the culture surface using tissue cell scrapers (TPP®). The total RNA from primary cell cultures were obtained on the tenth day of cell culture (before cells reach confluence). Also, from subsequent passages, total RNA samples were isolated before the cell culture reaches a plateau phase (on the seventh day of culture for the first passage and on the fouth day of culture for cells in the second and third passages). The RNA samples were isolated using Total RNA (A&A Biotechnology, Gdynia, Poland) according to the method of Chomczynski and Sacchi (1987). RNA quality was analyzed using horizontal electrophoresis through 1.5% agarose gel (Prona Agarose, EU). For RNA quantity determination, the samples were measured using Quant-iTTM RNA BR Assay Kit and Qubit fluorometer (Invitrogen GmbH, Darmstadt, Germany). Contaminating genomic DNA was removed from the RNA samples by DNase I digestion (Fermentas UAB, Vilnius, Lithuania). Total RNA (1 μg) was reverse-transcribed using the RevertAid™ Premium First Strand cDNA Synthesis Kit (Fermentas UAB). Each sample was reverse-transcribed in triplicate. Single-stranded cDNA samples were preserved at 20°C until real-time PCR reactions were performed. Before real-time PCRs, cDNA samples were quantified using Quant-iTTM ssDNA Assay Kit and Qubit fluorormeter (Invitrogen).
Real-time PCR.
Single-strand cDNA (40 ng) was used for real-time PCRs; all samples were run in triplicate in the total volume of 15 μl containing 12.5 μl of SybrGreen PCR Master Mix (KAPA™ SYBR® qPCR Kit, KapaBiosystems, Woburn, MA), 200 nM of each primer, and H2O up to 15 μl. Real-time PCRs were performed on Rotor-Gene (Qiagen GmbH, Hilden, Germany). Reference genes and genes of interest were analyzed using the primers listed in Table 1. The group of reference genes comprised β-actin gene (ACTB), glyceraldehyde-3-phosphate dehydrogenase gene (GAPDH), small subunit (18S) ribosomal RNA gene (18S rRNA), the large subunit (28S) ribosomal RNA gene (28S rRNA), and UXT (Table 1). Subsequently, most stable reference genes were selected using geNorm application. Stability (M-gene stability measure) was analyzed. The normalization factors NF
n
and NF
n + 1 were calculated (Vandesompele et al. 2002). In the group of genes of interest, casein genes, whey protein genes, and butyrophilin gene were chosen. All primer sequences were designed using Primer3 Input software (version 0.4.0, http://frodo.wi.mit.edu/primer3/; Table 1) and were synthesized by the DNA Sequencing and Oligonucleotyde Synthesis Lab in the Institute of Biochemistry and Biophysics PAN (www.ibb.waw.pl). Relative transcript quantification standard curves were plotted using a sixfold serial dilution of cDNA. The reaction efficiency for all reference and experimental genes of interest ranged between 0.95 and 1.03. The relative level of expression for genes of interest was analyzed using the delta-C
t method and was normalized by dividing by a proper normalization factor (Vandesompele et al. 2002).
Table 1 Primer sequences and amplicon size for real-time PCR analysis
Statistical analyses.
Analyses were performed using the STATISTICA 8.0 (StatSoft Inc., Tulsa, OK) statistical software. The Kruskal–Wallis analysis of variance by ranks was used for data obtained from tissue fragment examinations. For data evaluated from epithelial cell cultures, the Friedman ANOVA non-parametric test was applied.