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Two new species and a new record of Nigrograna (Nigrogranaceae, Pleosporales) from China and Thailand

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Abstract

Based on the morphological and phylogenetic analyses, four specimens, which were collected from China and Thailand respectively, are identified as two novel species Nigrograna hydei and N. obtusispora and a new record N. magnoliae in the present study. These share morphologic characters typical of Nigrograna, and cluster together with existing Nigrograna species in the phylogenetic analyses of a combined ITS-TEF1-α sequence dataset. Illustrations and comprehensive descriptions for these taxa are provided.

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References

  • Ahmed SA, van de Sande WWJ, Stevens DA, Fahal A, van Diepeningen AD, Menken SBJ, de Hoog GS (2014) Revision of agents of black-grain eumycetoma in the order of Pleosporales. Persoonia 33:141–154. https://doi.org/10.3767/003158514x684744

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chomnunti P, Hongsanan S, Aguirre-Hudson B, Tian Q, Peršoh D, Dhami MK, Alias AS, Xu JC, Liu XZ, Hyde Stadler M, KD, (2014) The sooty moulds. Fungal Diversity 66:1–36. https://doi.org/10.1007/s13225-014-0278-5

    Article  Google Scholar 

  • Dai DQ, Phookamsak R, Wijayawardene NN, Li WJ, Bhat DJ, Xu JC, Taylor JE, Hyde KD, Chukeatirote E (2017) Bambusicolous fungi. Fungal Diversity 82:1–105. https://doi.org/10.1007/s13225-016-0367-8

    Article  Google Scholar 

  • Dayarathne MC, Jones EBG, Maharachchikumbura SSN, Devadatha B, Sarma VV, Khongphinitbunjong K, Chomnunti P, Hyde KD (2020) Morpho-molecular characterization of microfungi associated with marine based habitats. Mycosphere 11:1–188. https://doi.org/10.5943/mycosphere/11/1/1

    Article  Google Scholar 

  • De Gruyter J, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW (2012) Rediposition of phoma-like anamorphs in Pleosporales. Studies in Mycology 75:1–36. https://doi.org/10.3114/sim0004

    Article  PubMed Central  Google Scholar 

  • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In Nucleic Acids Symposium Series 41:95–98

    CAS  Google Scholar 

  • Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42:182–192. https://doi.org/10.1093/sysbio/42.2.182

    Article  Google Scholar 

  • Index Fungorum (2020) http://www.indexfungorum.org/Names/Names.asp

  • Hyde KD, Norphanphoun C, Abreu VP, Bazzicalupo A, Chethana KWT, Clericuzio M, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, He MQ, Hongsanan S, Huang SK, Jayasiri SC, Jayawardena RS, Karunarathna A, Konta S, Kušan I, Lee H, Li JF, Lin CG, Liu NG, Lu YZ, Luo ZL, Manawasinghe IS, Mapook A, Perera RH, Phookamsak R, Phukhamsakda C, Siedlecki L, Soares AM, Tennakoon DS, Tian Q, Tibpromma S, Wanasinghe DN, Xiao YP, Yang J, Zeng XY, Abdel-Aziz FA, Li WJ, Senanayake IC, Shang QJ, Daranagama DA, de Silva NI, Thambugala KM, Abdel-Wahab MA, Bahkali AH, Berbee ML, Boonmee S, Bhat DJ, Bulgakov TS, Buyck B, Camporesi E, CastaÑEda-Ruiz RF, Chomnunti P, Doilom M, Dovana F, Gibertoni TB, Jadan M, Jeewon R, Jones EBJ, Kang JC, Karunarathna SC, Lim YW, Liu JK, Liu ZY, PlautzJr HL, Lumyong S, Maharachchikumbura SSN, Matočec N, McKenzie EHC, Mešić A, Miller DI, Pawłowska J, Pereira OL, Promputtha I, Romero AI, Ryvarden L, Su HY, Suetrong S, Tkalčec Z, Vizzini A, Wen TC, Wisitrassameewong K, Wrzosek M, Xu JC, Zhao Q, Zhao RL, Mortimer PE (2017) Fungal diversity notes 603-708: taxonomic and phylogenetic notes on genera and species. Fungal Diversity 87:1–235. https://doi.org/10.1007/s13225-017-0391-3

    Article  Google Scholar 

  • Jaklitsch WM, Voglmayr H (2016) Hidden diversity in Thyridaria and a new cicumscription of the Thyridariaceae. Studies in Mycology 85:35–64. https://doi.org/10.1016/j.simyco.2016.09.002

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jayasiri SC, Hyde KD, Ariyawansa HA, Bhat DJ, Buyck B, Cai L, Dai YC, Abd-Elsalam KA, Ertz D, Hidayat I, Jeewon R, Jones EBG, Bahkali AH, Karunarathna SC, Liu JK, Luangsa-Ard JJ, Lumbsch HT, Maharachchikumbura SSN, McKenzie EHC, Moncalvo JM, Ghobad-Nejhad M, Nilsson H, Pang KL, Pereira OL, Phillips AJL, Raspé O, Rollins AW, Romero AI, Etayo J, Selcuk F, Stephenson SL, Suetrong S, Taylor JE, Tsui CKM, Vizzini A, Abdel-Wahab MA, Wen TC, Boonmee S, Dai DQ, Daranagama DA, Dissanayake AJ, Ekanayaka AH, Fryar SC, Hongsanan S, Jayawardena RS, Li WJ, Perera RH, Phookamsak R, de Silva NI, Thambugala KM, Tian Q, Wijayawardene N, Zhao RL, Zhao Q, Kang JC, Promputtha I (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74:3–18. https://doi.org/10.1007/s13225-015-0351-8

    Article  Google Scholar 

  • Jeewon R, Hyde KD (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7:1669–1677. https://doi.org/10.5943/mycosphere/7/11/4

    Article  Google Scholar 

  • Kolařík M (2018) New taxonomic combinations in endophytic representatives of the genus Nigrograna. Czech Mycology 70:123–126

    Article  Google Scholar 

  • Kolařík M, Spakowicz DJ, Gazis R, Shaw J, Kubátová A, Nováková A, Chudíčková M (2017) Biatriospora (Ascomycota: Pleosporales) is an ecologically diverse genus including facultative marine fungi and endophytes with biotechnological potential. Plant Systematic and Evolution 303:35–50. https://doi.org/10.1007/s00606-016-1350-2

    Article  CAS  Google Scholar 

  • Liu JK, Chomnunti P, Cai L, Phookamsak R, Chukeatirote E, Jones EBG, Moslem M, Hyde KD (2010) Phylogeny and morphology of Neodeightonia palmicola sp. nov. from plams. Sydowia 62:261–276

    Google Scholar 

  • Liu JK, Hyde KD, Jeewon R, Phillips AJL, Maharachchikumbura SSN, Ryberg M, Liu ZY, Zhao Q (2017) Ranking higher taxa using divergence times: a case study in Dothideomycetes. Fungal Diversity 84:75–99. https://doi.org/10.1007/s13225-017-0385-1

    Article  Google Scholar 

  • Mapook A, Hyde KD, McKenzie EHC, Jones EBG, Bhat DJ, Jeewon R, Stadler M, Samarakoon MC, Malaithong M, Tanunchai B, Buscot F, Wubet T, Witoon P (2020) Taxonomic and phylogenetic contributions to fungi associated with the invasive weed Chromolaena odorata (Siam weed). Fungal Diversity 101:1–175. https://doi.org/10.1007/s13225-020-00444-8

    Article  Google Scholar 

  • Nylander J (2008) MrModeltest2 version 2.3 (program for selecting DNA substitution models using PAUP*). Evolutionary Biology Centre, Uppsala

    Google Scholar 

  • Page RDM (1996) TREEVIEW, tree drawing software for Apple Macintosh and Microsoft Windows. Division of Environmental and Evolutionary Biology, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow

    Google Scholar 

  • Rannala B, Yang Z (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43:304–311. https://doi.org/10.1007/BF02338839

    Article  CAS  PubMed  Google Scholar 

  • Rehner S (2001) Primers for elongation factor 1-α (EF1-α), available at http://ocid.NACSE.ORG/research/deephyphae/EFlprimer.pdf. Accessed 10 Sep 2017

  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61:539–542. https://doi.org/10.1093/sysbio/sys029

    Article  PubMed  PubMed Central  Google Scholar 

  • Shaw JJ, Spakowicz DJ, Dalal RS, Davis JH, Lehr NA, Dunican BF, Orellana EA, Narváez-Trujillo A, Strobel SA (2015) Biosynthesis and genomic analysis of medium-chain hydrocarbon production by the endophytic fungal isolate Nigrograna mackinnonii E5202H. Applied Microbiology and Biotechnology 99:3715–3728. https://doi.org/10.1007/s00253-014-6206-5

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Swofford DL (2002) PAUP: phylogenetic analysis using parsimony, version 4.0 b10. Sinauer Associattes, Sunderland.

  • Tibpromma S, Hyde KD, Jeewon R, Maharachchikumbura SSN, Liu JK, Bhat DJ, Jones EBJ, McKenzie EHC, Camporesi E, Bulgakov TS, Doilom M, de Azevedo SALCM, Das K, Manimohan P, Gibertoni TB, Lim YW, Ekanayaka AH, THONGBAI B, Lee HB, Yang JB, Kirk PW, Sysouphanthong P, Singh SK, Boonmee S, Dong W, Raj KNA, Latha KPD, Phookamsak R, Phukhamsakda C, Konta S, Jayasiri SC, Norphanphoun C, Tennakoon DS, Li JF, Dayarathne MC, Perera RH, Xiao YP, Wanasinghe DN, Senanayake IC, Goonasekara ID, de Silva NI, Mapook A, Jayawardena RS, Dissanayake AJ, Manawasinghe IS, Chethana KWT, Luo ZL, Hapuarachchi KK, BAGHELA A, Soares AM, Vizzini A, Meiras-Ottoni A, Mešić A, Dutta AK, de Souza CAF, Richter C, Lin CG, Chakrabarty D, Daranagama DA, Lima DX, Chakraborty D, Ercole E, Wu F, Simonini G, Vasquez G, da Silva GA, PlautzJr HL, Ariyawansa HA, Lee H, Kušan I, Song J, Sun JZ, Karmakar J, Hu KF, Semwal KC, Thambugala KM, Voigt K, Acharya K, Rajeshkumar KC, Ryvarden L, Jadan M, Hosen MI, Mikšk M, Samarakoon MC, Wijayawardene NN, Kim NK, Matočec N, Singh PN, Tian Q, Bhatt RP, de Oliveira RJV, Tulloss RE, Aamir S, Kaewchai S, Marathe SD, Khan S, Hongsanan S, Adhikari S, Mehmood T, Bandyopadhyay TK, Svetasheva TY, Nguyen TTT, Antonn V, Li WJ, Wang Y, Indoliya Y, Tkalčec Z, Elgorban AM, Bahkali AH, Tang AMC, Su HY, Zhang H, Promputtha I, Luangsa-Ard J, Xu JC, Yan JY, Kang JC, Stadler M, Mortimer PE, Chomnunti P, Zhao Q, Phillips AJL, Nontachaiyapoom S, Wen TC, Karunarathna SC (2017) Fungal diversity notes 491–602: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 83:1–261. https://doi.org/10.1007/s13225-017-0378-0

    Article  Google Scholar 

  • Wanasinghe DN, Wijayawardene NN, Xu JC, Cheewangkoon R, Mortimer PE (2020) Taxonomic novelties in Magnolia-associated pleosporalean fungi in the Kunming Botanical Gardens (Yunnan, China). PLoS One 15(7):e0235855. https://doi.org/10.1371/journal.pone.0235855

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • White T, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M, Gelfand D, Shinsky J, White T (eds) PCR protocols: a guide to methods and applications. Academic Press, New York, pp 315–322

    Google Scholar 

  • Zhao YZ, Zhang ZF, Cai L, Peng JW, Liu F (2018) Four new filamentous fungal species from newly-collected and hive stored bee pollen. Mycosphere 9:1089–1116. https://doi.org/10.5943/mycosphere/9/6/3

    Article  Google Scholar 

  • Zhaxybayeva O, Gogarten JP (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 3:4 available at http://www.biomedcentral.com/1471-2164/3/4. Accessed 25 Nov 2017

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Acknowledgments

Jian-Kui Liu would like to thank the National Natural Science Foundation of China (NSFC 31600032) and Science and Technology Foundation of Guizhou Province (LH [2015]7061). Ze-Hong Meng would like to thank the Science and Technology Foundation of Guizhou Province (NY [2015]3011-2). Shaun Pennycook is thanked for checking and revising the names of new taxa.

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Correspondence to Zuo-Yi Liu.

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Zhang, JF., Liu, JK.(., Thambugala, K.M. et al. Two new species and a new record of Nigrograna (Nigrogranaceae, Pleosporales) from China and Thailand. Mycol Progress 19, 1365–1375 (2020). https://doi.org/10.1007/s11557-020-01633-0

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