Abstract
More than 40 unique taxa in genus Epichloë that form associations with grasses in the subfamily Pooideae have been described based on morphology, host specificity, and phylogenetic analyses. In this study, a new Epichloë species, Epichloë sinensis sp. nov., was isolated from seeds of endophyte-infected Festuca sinensis that were collected from northwest China. This endophyte has typical morphological characteristics of the Epichloë genus. Endophyte hyphae are long, thin, septate, a little curved, and sparsely branched in seed aleurone layer and are orientated longitudinally and parallel to each other without branching in the intercellular spaces of leaf sheaths. On potato dextrose agar (PDA), colonies are smooth, cottony, and white. Phylogenetic relationships showed that E. sinensis was an asexual interspecific hybrid of Epichloë poae and Epichloë sibirica based on intron sequences of housekeeping genes for β-tubulin (TUBB) and translation elongation factor 1-α (TEF1-α). The alkaloid chemotype analysis showed that this E. sinensis may have the ability to produce lolitrem B and peramine. These morphological and phylogenetic characteristics supported the designation of isolates from F. sinensis as a new interspecific hybrid species.




References
Bush LP, Wilkinson HH, Schardl CL (1997) Bioprotective alkaloids of grass-fungal endophyte symbioses. Plant Physiol 114:1–7
Cabral D, Cafaro MJ, Saidman B, Lugo M, Reddy PV, White JF Jr (1999) Evidence supporting the occurrence of a new species of endophyte in some South American grasses. Mycologia 91:315–325
Campbell MA, Tapper BA, Simpson WR, Johnson RD, Mace W, Ram A, Lukito Y, Dupont PY, Johnson LJ, Scott DB, Ganley ARD, Cox MP (2017) Epichloë hybrida, sp. nov., an emerging model system for investigating fungal allopolyploidy. Mycologia 109(5):715–729
Cargo PD, Iannone LJ, Vignale MV, Schardl CL, Rossi MS (2014) Species diversity of Epichloë symbiotic with two grasses from southern Argentinean Patagonia. Mycologia 106:339–352
Charlton ND, Craven KD, Mittal S, Hopkins AA, Young CA (2012) Epichloë canadensis, a new interspecific epichloid hybrid symbiotic with Canada wildrye (Elymus canadensis). Mycologia 104:1187–1199
Charlton ND, Craven KD, Afkhami ME, Hall BA, Ghimire SR, Young CA (2014) Interspecific hybridization and bioactive alkaloid variation increases diversity in endophytic Epichloë species of Bromus laevipes. FEMS Microbiol Ecol 90:276–289
Chen YG, Ji YL, Yu HS, Wang ZW (2009) A new Neotyphodium species from Festuca parvigluma Steud. Grown in China Mycologia 101:681–685
Chen L, Li XZ, Li CJ, Swoboda GA, Young CA, Sugawara K, Leuchtmann A, Schardl CL (2015) Two distinct Epichloë species symbiotic with Achnatherum inebrians, drunken horse grass. Mycologia 107:863–873
Christensen MJ, Bennett RJ, Ansari HA, Koga H, Johnson RD, Bryan GT, Simpson WR, Koolaard JP, Nickless EM, Voisey CR (2008) Epichloë endophytes grow by intercalary hyphal extension in elongating grass leaves. Fungal Genetic Biology 45:84–93
Chung KR, Schardl CL (1997) Sexual cycle and horizontal transmission of the grass symbiont, Epichloë typhina. Mycol Res 101:295–301
Craven KD, Hsiau PTW, Leuchtmann A, Hollin W, Schardl CL (2001) Multigene phylogeny of Epichloë species, fungal symbionts of grasses. Ann Mo Bot Gard 88:14–34
Fleetwood DJ, Scott B, Lane GA, Tanaka A, Johnson RD (2007) A complex ergovaline gene cluster in Epichloë endophytes of grasses. Applied and Enviromental Microbiology 73:2571–2579
Gams W, Petrini O, Schmidt D (1990) Acremonium uncinatum, a new endophyte in Festuca pratensis. Mycotaxon 37:67–71
Ghimire S, Rudgers J, Charlton N, Young C, Craven K (2011) Prevalence of an intraspecific Neotyphodium hybrid in natural populations of stout wood reed (Cinna arundinacea L.) from eastern North America. Mycologia 103:75–84
Han K, Ji YL, Wang Y, Wang ZW (2012) A Neotyphodium endophyte from Festuca myuros L. in Nanjing, China. Mycology 3:201–209
Iannone LJ, Cabral D, Schardl CL, Rossi MS (2009) Phylogenetic divergence, morphological and physiological differences distinguish a new Neotyphodium endophyte species in the grass Bromus auleticus from South America. Mycologia 101:340–351
Ji YL, Zhan LH, Kang Y, Sun XH, Yu HS, Wang ZW (2009) A new stromata-producing Neotyphodium species symbiotic with clonal grass Calamagrostis epigeios (L.) Roth. grown in China. Mycologia 101:200–205
Johnson R, Voisey C, Johnson L, Pratt J, Fleetwood D, Khan A, Bryan G (2007) Distribution of nrps gene families within the Neotyphodium/Epichloë complex. Fungal Genet Biol 44:1180–1190
Kang Y, Ji YL, Sun XH, Zhan LH, Li W, Yu HS, Wang ZW (2009) Taxonomy of Neotyphodium endophytes of Chinese native Roegneria plants. Mycologia 101:211–219
Kang Y, Ji YL, Zhang CW, Wang ZW (2011) Neotyphodium sinicum, from several Roegneria species throughout China, provides insights into the evolution of asexual endophytes. Symbiosis 54:37
Katoh K, Standley DM (2013) Mafft multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology & Evolution 30:772–780
Leuchtmann A, Schardl CL (1998) Mating compatibility and phylogenetic relationships among two new species of Epichloë and other congeneric European species. Mycol Res 102(10):1169–1182
Leuchtmann A, Schardl CL, Siegel MR (1994) Sexual compatibility and taxonomy of a new species of Epichloë symbiotic with fine fescue grasses. Mycologia 86:802–812
Leuchtmann A, Schmidt D, Bush LP (2000) Different levels of protective alkaloids in grasses with stroma-forming and seed-transmitted Epichloë/Neotyphodium endophytes. J Chem Ecol 26:1025–1036
Leuchtmann A, Bacon CW, Schardl CL, White JF Jr, Tadych M (2014) Nomenclatural realignment of Neotyphodium species with genus Epichloë. Mycologia 106:202–215
Leuchtmann A, Young CA, Stewart AV, Simpson WR, Hume DE, Scott B (2019) Epichloe novae-zelandiae, a new endophyte from the endemic New Zealand grass Poa matthewsii. N Z J Bot 57:271–288
Leyronas C, Raynal G (2008) Role of fungal ascospores in the infection of orchardgrass (Dactylis glomerata) by Epichloë typhina agent of choke disease. J Plant Pathol 90:15–21
Li CJ, Nan ZB, Paul VH, Dapprich PD, Liu Y (2004) A new Neotyphodium species symbiotic with drunken horse grass (Achnatherum inebrians) in China. Mycotaxon 90:141–147
Lin WH, Kuang Y, Wang JJ, Duan DD, Xu WB, Tian P, Clement N, Wang MN, Li MM, Ma BH (2019) Effects of seasonal variation on the alkaloids of different ecotypes of Epichloë endophyte–Festuca sinensis associations. Frontier in microbiology 10:1695
Liu J, Nagabhyru P, Schardl CL (2017) Epichloë festucae endophytic growth in florets, seeds, and seedlings of perennial ryegrass (Lolium perenne). Mycologia 109:691–700
Mc Cargo PD, Iannone LJ, Vignale MV, Schardl CL, Rossi MS (2014) Species diversity of Epichloë symbiotic with two grasses from southern Argentinean Patagonia. Mycologia 106:339–352
Moon CD, Scott B, Schardl CL, Christensen MJ (2000) The evolutionary origins of Epichloë endophytes from annual ryegrasses. Mycologia 92:1103–1118
Moon CD, Miles CO, Järlfors U, Schardl CL (2002) The evolutionary origins of three new Neotyphodium endophyte species from grasses indigenous to the southern hemisphere. Mycologia 94:694–711
Moon CD, Craven KD, Leuchtmann A, Clement SL, Schardl CL (2004) Prevalence of interspecific hybrids amongst asexual fungal endophytes of grasses. Mol Ecol 13:1455–1467
Moon CD, Guillaumin JJ, Ravel C, Li CJ, Craven KD, Schardl CL (2007) New Neotyphodium endophyte species from the grass tribes Stipeae and Meliceae. Mycologia 99:895–905
Morgan-Jones G, Gams W (1982) Notes on Hyphomycetes XLI. An endophyte of Festuca arundinacea and the anamorph of Epichloë typhina, new taxa in one of two new sections of Acremonium. Mycotaxon 15:311–318
Nan ZB (1996a) Incidence and distribution of endophytic fungi in seeds of some native and introduced grasses in China. Acta Pratacul Sin 5:1–8 (in Chinese with English abstract)
Nan ZB (1996b) Incidence and distribution of endophytic fungi in seeds and plants of some native and introduced grasses in China. Acta Pratacul Sin 5:13–17 (in Chinese with English abstract)
Nan ZB, Li CJ (2000) Neotyphodium in native grasses in China and observations on endophyte/host interaction. Proceedings of the 4th International Neotyphodium / grass Interactions Symposium. Soest 41–50
Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ (2015) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol 32:268–274
Peng QQ, Li CJ, Song ML, Nan ZB (2013) Effects of seed hydropriming on growth of Festuca sinensis, infected with Neotyphodium, endophyte. Fungal Ecol 6:83–91
Ronquist F, Huelsenbeck JP (2003) MrBayes:Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574
Saikkonen K, Wäli P, Helander M, Faeth SH (2004) Evolution of endophyte–plant symbioses. Trends Plant Sci 9:275–280
Schardl CL, Leuchtmann A (1999) Three new species of Epichloë symbiotic with North American grasses. Mycologia 91:95–107
Schardl CL, Leuchtmann A (2005) The Epichloë endophytes of grasses and the symbiotic continuum. In:Dighton J, White Jr JF, Oudemans PV, eds. The Fungal Community. Boca Raton, FL, USA: CRC Press. pp: 475–503
Schardl CL, Young CA, Faulkner JR, Florea S, Pan J (2012) Chemotypic diversity of epichloae, fungal symbionts of grasses. Fungal Ecol 5(3):331–344
Schardl CL, Florea S, Pan J, Nagabhyru P, Bec S, Calie PJ (2013a) The Epichloae: alkaloid diversity and roles in symbiosis with grasses. Curr Opin Plant Biol 16:480–488
Schardl CL, Young CA, Hesse U, Amyotte SG, Andreeva K, Calie PJ, Fleetwood DJ, Haws DC, Moore N, Oeser B, Panaccione DG, Schweri KK, Voisey CR, Farman ML, Jaromczyk JW, Roe BA, O’Sullivan DM, Scott B, Tudzynski P, An Z, Arnaoudova EG, Bullock CT, Charlton ND, Chen L, Cox M, Dinkins RD, Florea S, Glenn AE, Gordon A, Güldener U, Harris DR, Hollin W, Jaromczyk J, Johnson RD, Khan AK, Leistner E, Leuchtmann A, Li C, Liu J, Liu J, Liu M, Mace W, Machado C, Nagabhyru P, Pan J, Schmid J, Sugawara K, Steiner U, Takach JE, Tanaka E, Webb JS, Wilson EV, Wiseman JL, Yoshida R, Zeng Z (2013b) Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci. PLoS Genet 9:e1003323
Schardl CL, Young CA, Moore N, Krom N, Dupont PY, Pan J, Florea S, Webb JS, Jaromczyk J, Jaromczyk JW, Cox MP, Farman ML (2014) Genomes of plant-associated Clavicipitaceae. Adv Bot Res 70:291–327
Shymanovich T, Charlton ND, Musso AM, Scheerer J, Cech NB, Faeth SH, Young CA (2017) Interspecific and intraspecific hybrid Epichloë species symbiotic with the North American native grass Poa alsodes. Mycologia 109:459–474
Siegel MR, Latch GC, Johnson MC (1987) Fungal endophytes of grasses. Annu Rev Phytopathol 25:293–315
Song H, Nan ZB (2015) Origin, divergence, and phylogeny of asexual Epichloë endophyte in Elymus species from Western China. PLoS One 1:e0127096
Spiering MJ, Davies E, Tapper BA, Schmid J, Lane GA (2002) Simplified extraction of ergovaline and peramine for analysis of tissue distribution in endophyte-infected grass tillers. J Agric Food Chem 50:5856–5862
Spiering MJ, Moon CD, Wilkinson HH, Schardl CL (2005) Gene clusters for insecticidal loline alkaloids in the grass-endophytic fungus Neotyphodium uncinatum. Genetics 169:1403–1414
Tadych M, Ambrose KV, Bergen MS, Belanger FC, White JF Jr (2012) Taxonomic placement of Epichloë poae sp.nov. and horizontal dissemination to seedlings via conidia. Fungal Divers 54:117–131
Takach JE, Mittal S, Swoboda GA, Bright SK, Trammell MA, Hopkins AA, Young CA (2012) Genotypic and chemotypic diversity of Neotyphodium endophytes in tall fescue from Greece. Appl Environ Microbiol 78:5501–5510
Tanaka A, Tapper BA, Popay A, Parker EJ, Scott B (2005) A symbiosis expressed non-ribosomal peptide synthetase from a mutualistic fungal endophyte of perennial ryegrass confers protection to the symbiotum from insect herbivory. Mol Microbiol 57:1036–1050
Tian P, Kuang Y, Lin WH, Wang JJ, Nan ZB (2018) Shoot morphology and alkaloid content of Epichloë endophyte-Festuca sinensis associations. Crop and Pasture Science 69:430–438
Wang JJ, Zhou YP, Lin WH, Li MM, Wang MN, Wang ZG, Kuang Y, Tian P (2017) Effect of an Epichloë endophyte on adaptability to water stress in Festuca sinensis. Fungal Ecol 30:39–47
Wei YK, Gao YB, Xu H, Su D, Zhang X, Wang YH, Lin F, Chen L, Nie LY, Ren AZ (2006) Occurrence of endophytes in grasses native to northern China. Grass Forage Sci 61:422–429
Welty RE, Milbrath GM, Faulkenberry D, Azevedo MD, Meek L, Hall K (1986) Endophyte detection in tall fescue seed by staining and Elisa. Seed Sci Technol 14:105–116
Yang Y, Chen N, Li CJ (2011) The morphological diversity of endophytic fungus in Festuca sinensis in Gansu province. Pratacultural Science 28:273–278 (in Chinese with English abstract)
Yi M, Hendricks WQ, Kaste J, Charlton ND, Nagabhyru P, Panaccione DG, Young CA (2018) Molecular identification and characterization of endophytes from uncultivated barley. Mycologia 110:453–472
Young C, Bryant M, Christensen M, Tapper B, Bryan G, Scott B (2005) Molecular cloning and genetic analysis of a symbiosis-expressed gene cluster for lolitrem biosynthesis from a 320 mutualistic endophyte of perennial ryegrass. Mol Gen Genomics 274:13–29
Young CA, Felitti S, Shields K, Spangenberg G, Johnson RD, Bryan GT, Saikia S, Scott B (2006) A complex gene cluster for indole-diterpene biosynthesis in the grass endophyte Neotyphodium lolii. Fungal Genet Biol 43:679–693
Young CA, Tapper BA, May K, Moon CD, Schardl CL, Scott B (2009) Indole-diterpene biosynthetic capability of Epichloë endophytes as predicted by ltm gene analysis. Appl Environ Microbiol 75(7):2200–2211
Zhang X, Ren AZ, Wei YK, Lin F, Li C, Liu ZJ, Gao YB (2009) Taxonomy, diversity and origins of symbiotic endophytes of Achnatherum sibiricum, in the Inner Mongolia steppe of China. FEMS Microbiol Lett 301:12–20
Zhang W, Card SD, Mace WJ, Christensen MJ, McGill CR, Matthew C (2017) Defining the pathways of symbiotic Epichloë colonization in grass embryos with confocal microscopy. Mycologia 109:153–161
Zhou LY, Li CJ, Zhang XX, Johnson R, Bao GS, Yao X, Chai Q (2015a) Effects of cold shocked Epichloë infected Festuca sinensis on ergot alkaloid accumulation. Fungal Ecol 14:99–104
Zhou LY, Zhang XX, Li CJ, Christensen MJ, Nan ZB (2015b) Antifungal activity and phytochemical investigation of the asexual endophyte of Epichloë sp. from Festuca sinensis. Sci China Life Sci 58:821–826
Zhu MJ, Ren AZ, Wen W, Gao YB (2013) Diversity and taxonomy of endophytes from Leymus chinensis in the Inner Mongolia steppe of China. FEMS Microbiol Lett 340(2):135–145
Funding
This research was supported by the National Nature Science Foundation of China (31971768), the National Basic Research Program of China (2014CB138702), the 111 project (B12002), the China Agriculture Research System (CARS-22 Green Manue), and the United States National Institute of Food and Agriculture Hatch project KY012044.
Author information
Authors and Affiliations
Corresponding author
Additional information
Section Editor: Hans-Josef Schroers
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
About this article
Cite this article
Tian, P., Xu, W., Li, C. et al. Phylogenetic relationship and taxonomy of a hybrid Epichloë species symbiotic with Festuca sinensis. Mycol Progress 19, 1069–1081 (2020). https://doi.org/10.1007/s11557-020-01618-z
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11557-020-01618-z