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Mycological Progress

, Volume 17, Issue 1–2, pp 191–203 | Cite as

Coniella lustricola, a new species from submerged detritus

  • Daniel B. Raudabaugh
  • Teresa Iturriaga
  • Akiko Carver
  • Stephen Mondo
  • Jasmyn Pangilinan
  • Anna Lipzen
  • Guifen He
  • Mojgan Amirebrahimi
  • Igor V. Grigoriev
  • Andrew N. Miller
Original Article
  • 338 Downloads

Abstract

The draft genome, morphological description, and phylogenetic placement of Coniella lustricola sp. nov. (Schizoparmeaceae) are provided. The species was isolated from submerged detritus in a fen at Black Moshannon State Park, Pennsylvania, USA and differs from all other Coniella species by having ellipsoid to fusoid, inequilateral conidia that are rounded on one end and truncate or obtuse on the other end, with a length to width ratio of 2.8. The draft genome is 36.56 Mbp and consists of 870 contigs on 634 scaffolds (L50 = 0.14 Mb, N50 = 76 scaffolds), with 0.5% of the scaffold length in gaps. It contains 11,317 predicted gene models, including predicted genes for cellulose, hemicellulose, and xylan degradation, as well as predicted regions encoding for amylase, laccase, and tannase enzymes. Many members of the Schizoparmeaceae are plant pathogens of agricultural crops. This draft genome represents the first sequenced Coniella genome and will be a valuable tool for comparisons among pathogenic Coniella species.

Keywords

Diaporthales Schizoparmeaceae Sordariomycetes 1000 Fungal Genome Project 

Notes

Acknowledgements

The authors would like to thank the Commonwealth of Pennsylvania, Pennsylvania Department of Conservation and Natural Resources, Pennsylvania Bureau of State Parks, and Black Moshannon State Park for supporting this research. The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. The authors thank Joseph Spatafora and the 1000 Fungal Genome Project for support in sequencing the genome of this fungus. The authors would also like to thank the Mycological Society of America and University of Illinois Urbana-Champaign School of Integrative Biology for the financial support and Michael Woodley for the field support. The authors also wish to thank the two anonymous reviewers who offered helpful insights to a previous version of this manuscript. Lastly, all datasets generated and/or analyzed during this study will be made available from the corresponding author upon request.

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Copyright information

© German Mycological Society and Springer-Verlag GmbH Germany 2017

Authors and Affiliations

  • Daniel B. Raudabaugh
    • 1
    • 2
  • Teresa Iturriaga
    • 2
    • 3
  • Akiko Carver
    • 4
    • 5
  • Stephen Mondo
    • 5
  • Jasmyn Pangilinan
    • 5
  • Anna Lipzen
    • 5
  • Guifen He
    • 5
  • Mojgan Amirebrahimi
    • 5
  • Igor V. Grigoriev
    • 4
    • 5
  • Andrew N. Miller
    • 2
  1. 1.Department of Plant BiologyUniversity of IllinoisUrbanaUSA
  2. 2.Illinois Natural History SurveyUniversity of IllinoisChampaignUSA
  3. 3.Dpto. Biología de OrganismosUniversidad Simón BolívarCaracasVenezuela
  4. 4.Department of Plant and Microbial BiologyUniversity of CaliforniaBerkeleyUSA
  5. 5.U.S. Department of Energy Joint Genome InstituteWalnut CreekUSA

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