Skip to main content

Advertisement

Log in

Liver segmentation by intensity analysis and anatomical information in multi-slice CT images

  • Original Article
  • Published:
International Journal of Computer Assisted Radiology and Surgery Aims and scope Submit manuscript

Abstract

Purpose

Quantitative assessment and essentially segmentation of liver and its tumours are of clinical importance in various procedures such as diagnosis, treatment planning, and monitoring. Moreover, segmentation of liver is the basis of further processing such as visualization, liver resection planning, and liver shape analysis. In this paper, we propose an algorithm to estimate an initial liver boundary.

Methods

The proposed method consists of four steps as follows: first, we compute statistical parameters of liver’s intensity range, associated with a large cross-section of liver CT image, utilizing expectation maximization (EM) algorithm. Second, by automatic extraction of ribs and segmentation of the heart, we define a ROI to confine the liver region for the next operations. Third, we propose a double thresholding approach to divide the liver intensity range into two overlapping ranges. In this case, based on a decision table, we label an object as a liver candidate or disregard it from the rest of the procedures. Finally, we employ an anatomical based rule to finalize a candidate as a liver tissue. In this case, we propose a color-map transformation scheme to convert the liver gray images into color images. In this way, we attempt to visually differentiate the liver from its surrounding tissues.

Results

We have evaluated the techniques in the presence of 14 randomly selected local datasets as well as all datasets from the MICCAI 2007 Grand Challenge workshop database. For the local datasets, the average overlap error and average volume difference were of values of 15.3 and 2.8%, respectively. In the case of the MICCAI datasets, the above values were estimated as 20.3 and −4.5%, respectively.

Conclusion

The results reveal that the proposed technique is feasible to perform consistent initial liver borders. The boundary might be then employed in an ‘Active Contour’ algorithm to finalize the liver mask.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Meinzer HP, Thorn M, Cardenas CE (2002) Computerized planning of liver surgery: an overview. Comput Graph 26(4): 569–576

    Article  Google Scholar 

  2. Reitinger B, Bornik A, Beichel R, Schmalstieg D (2006) Liver surgery planning using virtual reality. IEEE Comput Graph Appl 26(6): 36–47

    Article  PubMed  Google Scholar 

  3. Rusko L, Bekes G, Nemeth G, Fidrich M (2007) Fully automatic liver segmentation for contrast-enhanced CT images. In: Heimann T, Styner M, van Ginneken B (eds) Proceedings of MICCAI Workshop 3D segmentation in the clinic: a grand challenge

  4. Kainmüller D, Lange T, Lamecker H (2007) Shape constrained automatic segmentation of the liver based on a heuristic intensity model. In: Heimann T, Styner M, van Ginneken B (eds) MICCAI workshop 3D segmentation in the clinic: a grand challenge

  5. Lee J, Kim N, Lee H, Seo JB, Won HJ, Shin YM et al (2007) Efficient liver segmentation exploiting level-set speed images with 2.5D shape propagation. In: Heimann T, Styner M, van Ginneken B (eds) MICCAI workshop 3D segmentation in the clinic: a grand challenge

  6. Evans A, Lambrou T, Linney A, Todd-Pokropek A (2004) Automatic segmentation of liver using a topology adaptive snake. In: Proceedings of BioMED2004, Austria

  7. Lim SJ, Jeong YY, Ho YS (2006) Automatic liver segmentation for volume measurement in CT Images. J Vis Commun Image Represent 17(4): 860–875

    Article  Google Scholar 

  8. Saitoh T, Tamura Y, Kaneko T (2004) Automatic segmentation of liver region based on extracted blood vessels. Syst Comput Jpn 35(5): 1–10

    Article  Google Scholar 

  9. Gao L, Heath DG, Kuszyk BS, Fishman EK (1996) Automatic liver segmentation technique for three-dimensional visualization of CT data. Radiology 201(2): 359–364

    PubMed  CAS  Google Scholar 

  10. Chen EL, Chung PC, Chen CL, Tsai HM, Chang CI (1998) An automatic diagnostic system for CT liver image classification. IEEE Trans Biomed Eng 45(6): 783–794

    Article  PubMed  CAS  Google Scholar 

  11. Masumoto J, Hori M, Sato Y, Murakami T, Johkoh T, Nakamura H et al (2003) Automated liver segmentation using multislice CT images. Syst Comput Jpn 34(9): 71–82

    Article  Google Scholar 

  12. Susomboon R, Raicu DS, Furst J (2007) A hybrid approach for liver segmentation. In: Heimann T, Styner M, van Ginneken B (eds) MICCAI workshop 3D segmentation in the clinic: a grand challenge

  13. Heimann T, Meinzer HP, Wolf I (2007) A statistical deformable model for the segmentation of liver CT volumes. In: Heimann T, Styner M, van Ginneken B (eds) MICCAI workshop 3D segmentation in the clinic: a grand challenge

  14. Slagmolen P, Elen A, Seghers D, Loeckx D, Maes F, Haustermans K (2007) Atlas based liver segmentation using nonrigid registration with a B-spline transformation model. In: Heimann T, Styner M, van Ginneken B (eds) MICCAI workshop 3D segmentation in the clinic: a grand challenge

  15. Wimmer A, Soza G, Hornegger J (2007) Two-stage semi-automatic organ segmentation framework using radial basis functions and level sets. In: Heimann T, Styner M, van Ginneken B (eds) Proceedings of MICCAI workshop 3D segmentation in the clinic: a grand challenge

  16. Bishop CM (2006) Pattern recognition and machine learning. Springer, New York

    Google Scholar 

  17. Goshtasby AA (2005) 2-D and 3-D image registration. Wiley, New York

    Google Scholar 

  18. Foruzan AH, Zoroofi RA, Sato Y (2007) A hybrid technique for automatic liver segmentation of liver in CT images. In: Proceeding of CARS 2007. Berlin, pp s94–s96

  19. Ginneken BV, Heimann T, Styner MA (2007) 3D segmentation in the clinic: a grand challenge. In: Workshop on 3D segmentation in the clinic, MICCAI 2007, pp 7–15

  20. Foruzan AH, Zoroofi RA, Sato Y, Hori M, Murakami T, Nakamura H et al (2006) Automated segmentation of liver from 3D CT images. Int J Comput Assist Radiol Surg 1(1): 71–72

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Reza Aghaeizadeh Zoroofi.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Foruzan, A.H., Aghaeizadeh Zoroofi, R., Hori, M. et al. Liver segmentation by intensity analysis and anatomical information in multi-slice CT images. Int J CARS 4, 287–297 (2009). https://doi.org/10.1007/s11548-009-0293-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11548-009-0293-2

Keywords

Navigation