Abstract
1A6/DRIM has been identified as UTP20, a small subunit processome component, functioning in 18S rRNA processing. In the present study, the maturation of 28S rRNA and 5.8S rRNA was inhibited when 1A6/DRIM was silenced in HeLa cells; and coincidently, an accumulation of 32S rRNA precursor was observed. Immunoprecipitation was performed with the anti-1A6/DRIM antibody, followed by Northern blot with the ITS2 probe. The results showed that 1A6/DRIM was associated with both 32S and 12S rRNA precursors in vivo. The expression profile of 1A6/DRIM during rRNA processing was investigated by sucrose density gradient fractionation in combination with Western blot analysis. The results demonstrated that 1A6/DRIM was involved in the pre-60S particles in addition to the pre-40S particles and co-sediment with the 32S and 12S rRNA precursors in the nucleolus. Furthermore, the interaction of U8 snoRNA with 1A6/DRIM was revealed by immunoprecipitation. These results demonstrated that 1A6/DRIM interacted with both 32S rRNA and U8 snoRNA, being involved in 28S rRNA and 5.8S rRNA processing.
Similar content being viewed by others
References
Eichler D C, Craig N. Processing of eukaryotic ribosomal RNA. Prog Nucleic Acid Res Mol Biol, 1994, 49:197–239
Tollervey D, Kiss T. Function and synthesis of small nucleolar RNAs. Curr Opin Cell Biol, 1997, 9:337–342
Reichow S L, Hamma T, Ferré-D’Amaré A R, et al. The structure and function of small nucleolar Ribonucleoproteins. Nucleic Acids Res, 2007, 35:1452–1464
Geiduschek E P, Tocchini-Valentini G P. Transcription by RNA polymerase III. Annu Rev Biochem, 1988, 57:873–914
Bernstein K A, Baserga S J. The small subunit processome is required for cell cycle progression at G1. Mol Biol Cell, 2004, 15:5038–5046
Balakin A G, Smith L, Fournier M J. The RNA world of the nucleolus: Two major families of small RNAs defined by different Box elements with related functions. Cell, 1996, 86:823–834
Savino R, Gerbi S A. In vivo disruption of Xenopus U3 snRNA affects ribosomal RNA processing. EMBO J, 1990, 9:2299–2308
Hughes J M, Ares Jr M. Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA. EMBO J, 1991, 10:4231–4239
Beltrame M, Tollervey D. Base-pairing between U3 and the preribosomal RNA is required for 18S rRNA synthesis. EMBO J, 1995, 14:4350–4356
Sharma K, Tollervey D. Base pairing between U3 small nucleolar RNA and the 5′ end of 18S rRNA is required for pre-rRNA processing. Mol Cell Biol, 1999, 19:6012–6019
Cavaillé J, Hadjiolov A A, Bachellerie J P. Processing of mammalian rRNA precursors at the 3′-end of 18S rRNA Identification of cis-acting signals suggests the involvement of U13 small nucleolar RNA. Eur J Biochem, 1996, 242:206–213
Liang W Q, Fournier M J. U14 base-pairs with 18S rRNA: A novel snoRNA interaction required for rRNA processing. Genes Dev, 1995, 9:2433–2443
Li H V, Zagorski J, Foumier M J. Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cereviske. Mol Cell Biol, 1990, 10:1145–l152
Atzorn V, Fragapane P, Kiss T. U17/snR30 is a ubiquitous snoRNA with two conserved sequence motifs essential for 18S rRNA production. Mol Cell Biol, 2004, 24:1769–1778
Tycowski I, Shu M D, Steitz J A. Requirement for intron-encoded U22 small nucleolar RNA in 18S ribosomal RNA maturation. Science, 1994, 266:1558–l561
Peculis B A, Steitz J A. Disruption of U8 nucleolar snRNA inhibits 5.8S and 28S rRNA processing in the Xenopus oocyte. Cell, 1993, 73:1233–1245
Peculis B A, Steitz J A. Sequence and structural elements critical for U8 snRNP function in Xenopus oocytes are evolutionarily conserved. Genes Dev, 1994, 8:2241–2255
Peculis B A. The sequence of the 5′ end of the U8 small nucleolar RNA is critical for 5.8S and 28S rRNA maturation. Mol Cell Biol, 1997, 17:3702–3713
Tomasevic N, Peculis B. Identification of a U8 snoRNA-specific binding protein. J Biol Chem, 1999, 274:35914–35920
Michot B, Joseph N, Mazan S, et al. Evolutionarily conserved structural features in the ITS2 of mammalian pre-rRNA and potential interactions with the snoRNA U8 detected by comparative analysis of new mouse sequences. Nucleic Acids Res, 1999, 27:2271–2282
Dragon F, Gallagher J E G, Compagnone-Post P A, et al. A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature, 2002, 417:967–970
Lubben B, Marshallsay C, Rottman N, et al. Isolation of U3 snoRNP from CHO cells: A novel 55 kD protein binds to the central part of U3 snoRNA. Nucleic Acids Res, 1993, 21:5377–5385
Bernstein K A, Gallagher J E, Mitchell B M, et al. The small-subunit processome is a ribosome assembly intermediate. Eukaryot Cell, 2004, 3:1619–1626
Wang Y, Liu J, Zhao H, et al. Human 1A6/DRIM, the homolog of yeast Utp20, functions in the processing of 18S rRNA. Biochim Biophys Acta, 2007, 1773:863–868
Strezoska Z, Pestov D G, Lau L F. Functional Inactivation of the mouse nucleolar protein Bop1 inhibits multiple steps in pre-rRNA processing and blocks cell cycle progression. J Biol Chem, 2002, 277:29617–29625
Lapik Y R, Fernandes C J, Lau L F, et al. Pestov, physical and functional interaction between Pes1 and Bop1 in mammalian ribosome biogenesis. Mol Cell, 2004, 15:17–29
Pluk H, Soffner J, Lührmann R, et al. cDNA Cloning and characterization of the human U3 small nucleolar ribonucleoprotein complex- associated 55-kilodalton protein. Mol Cell Biol, 1998, 18:488–498
Rohrmoser M, Hölzel M, Grimm T, et al. Interdependence of Pes1, Bop1, and WDR12 controls nucleolar localization and assembly of the PeBoW complex required for maturation of the 60S ribosomal subunit. Mol Cell Biol, 2007, 27:3682–3694
Hadjiolova K V, Nicoloso M, Mazan S, et al. Alternative pre-rRNA processing pathways in human cells and their alteration by cycloheximide inhibition of protein synthesis. Eur J Biochem, 1993, 212:211–215
Strezoska Z, Pestov D G, Lau L F. Bop1 Is a mouse WD40 repeat nucleolar protein involved in28S and 5.8S rRNA processing and 60S ribosome biogenesis. Mol Cell Biol, 2000, 20:5516–5528
Pestov D G, Stockelman M G, Strezoska Z, et al. ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAs. Nucleic Acids Res, 2001, 29:3621–3630
Kinoshita Y, Jarell A D, Flaman J M, et al. Pescadillo, a novel cell cycle regulatory protein abnormally expressed in malignant cells. J Biol Chem, 2001, 276:6656–6665
Lerch-Gaggl A, Haque J, Li J, et al. Pescadillo is essential for nucleolar assembly, ribosome biogenesis, and mammalian cell proliferation. J Biol Chem, 2002, 277:45347–45355
Hölzel M, Grimm T, Rohrmoser M, et al. The BRCT domain of mammalian Pes1 is crucial for nucleolar localization and rRNA processing. Nucleic Acids Res, 2007, 35:789–800
Gessert S, Maurus D, Rössner A, et al. Pescadillo is required for Xenopus laevis eye development and neural crest migration. Dev Biol, 2007, 310:99–112
Hölzel M, Rohrmoser M, Schlee M, et al. Mammalian WDR12 is a novel member of the Pes1-Bop1 complex and is required for ribosomebiogenesis and cell proliferation. J Cell Biol, 2005, 170:367–378
Grimm T, Hölzel M, Rohrmoser M, et al. Dominant-negative Pes1 mutants inhibit ribosomal RNA processing and cell proliferation via incorporation into the PeBoW-complex. Nucleic Acids Res, 2006, 34:3030–3043
Borovjagin A V, Gerbi S. U3 small nucleolar RNA is essential for cleavage at sites 1, 2 and 3 in pre-rRNA and determines which rRNA processing pathway is taken in Xenopus oocytes. J Mol Biol, 1999, 286:1347–1363
Parker K A, Bruzik J P, Steitz J A. An in vitro interaction between the human U3 snRNP and 28S rRNA sequences near the α-sarcin site. Nucleic Acids Res, 1988, 16:10493–10590
Dez C, Dlakić M, Tollervey D. Roles of the HEAT repeat proteins Utp10 and Utp20 in 40S ribosome maturation. RNA, 2007, 13:1516–1527
Grandi P, Rybin V, Bassler J, et al. 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol Cell, 2002, 10:105–115
Milkereit P, Kuèhnl H, Gas N, et al. The pre-ribosomal network. Nucleic Acids Res, 2003, 31:799–804
Pérez-Fernández J, Román Á, Rivas J D L, et al. The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism. Mol Cell Biol, 2007, 27:5414–5429
Author information
Authors and Affiliations
Corresponding authors
About this article
Cite this article
Kong, R., Han, W., Ulrich, H.W. et al. 1A6/DRIM, the human UTP20 functions in 28S and 5.8S rRNA processing. Chin. Sci. Bull. 55, 1770–1776 (2010). https://doi.org/10.1007/s11434-010-3166-8
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11434-010-3166-8