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Fine mapping of the red plant gene R 1 in upland cotton(Gossypium hirsutum)

  • Articles/Crop Genetics
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Chinese Science Bulletin

Abstract

Sub 16 is a substitution line with G. hirsutum cv. TM-1 genetic background except that the 16th chromosome (Chr. 16) is replaced by the corresponding homozygous chromosome of G. barbadense cv. 3-79, and T586 is a G. hirsutum multiple gene marker line with 8 dominant mutation genes. The R 1 gene for anthocyanin pigmentation was tagged in Chr. 16 in T586. The objective of this research was to screen SSR markers tightly linked with R 1 by using the F2 segregating population containing 1259 plants derived from the cross of Sub 16 and T586 and the backbone genetic linkage map from G. hirsutum×G. barbadense BC1 newly updated by our laboratory. Genetic analysis suggested that the segregation ratio of red plants in the F2 population fit Mendelian 1:2:1 inheritance, confirming that the red plant trait was controlled by an incomplete dominance gene. Preliminary mapping of R 1 was conducted using 237 randomLy selected F2 individuals and JoinMap v3.0 software. Then, a fine map of R1 was constructed using the F2 segregating population containing 1259 plants, and R 1 was located between NAU4956 and NAU6752, with only 0.49 cM to the nearest maker loci (NAU6752). These results provided a foundation for map-based cloning of R 1 and further development of cotton cultivars with red fibers by transgenic technology.

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References

  1. Wei J F, He J F, Wu X T. Color cotton (in Chinese). Hebei Textile, 2008, 132(1): 8–16

    Google Scholar 

  2. Du X M, Zhang T Z, Yuan Y L. The research status of the color cotton and expectation (in Chinese). Chin Agric Sci Bull, 1997, 13(3): 30–32

    Google Scholar 

  3. Qiu X M, Zhou W L, Li M S, et al. Study on the genetics and production of fiber pigments and color deviation after wetting process of naturally colored cotton (in Chinese). Sci Agric Sin, 2002, 35(6): 610–615

    Google Scholar 

  4. Qiu X M. Research progress and prospects on naturally-colored cotton (in Chinese). Cotton Sci Sin, 2004, 16(4): 249–254

    Google Scholar 

  5. Kohel R J, Leuis C F, eds. Cotton. Madison, Wisconsin: American Society of Agronomy Publishers, 1984

    Google Scholar 

  6. Guo W Z, Cai C P, Wang C B, et al. A preliminary analysis of genome structure and composition in Gossypium hirsutum. BMC Genomics, 2008, 9: 314

    Article  Google Scholar 

  7. Ren L H, Zhang T Z. Genetic evaluation of seven Substitution Lines in Upland Cotton (in Chinese). Acta Agron Sin, 2001, 27(6): 993–999

    Google Scholar 

  8. Ren L H, Guo W Z, Zhang T Z. Identification of quantitative trait loci (QTLs) affecting yield and fiber properties in Chromosome 16 in cotton using substitution line (in Chinese). Acta Bot Sin, 2002, 44(7): 815–820

    Google Scholar 

  9. Paterson A H, Brubaker C, Wendel J F. A rapid method for extraction of cotton (Gossypium spp.) genomic DNA suitable for RFLP or PCR analysis. Plant Mol Biol Rep, 1993, 11: 122–127

    Article  Google Scholar 

  10. Zhang J, Wu Y T, Guo W Z, et al. Fast screening of microsatellite markers in cotton with PAGE/silver staining. Cotton Sci, 2000, 12: 267–269

    Google Scholar 

  11. Zhang J, Guo W Z, Zhang T Z. Molecular linkage map of allotetraploid cotton (Gossypium hirsutum L. × Gossypium barbadense L.) with a haploid population. Theor Appl Genet, 2002, 105: 1166–1174

    Article  Google Scholar 

  12. Van Ooijen J W, Voorrips R E. JoinMapR Version 3.0: software for the calculation of genetic linkage maps. CPRO-DLO, Wageningen. 2001

    Google Scholar 

  13. Voorrips R E. MapChart: Software for the graphical presentation of linkage maps and QTLs. J Heredity, 2002, 93(1): 77–78

    Article  Google Scholar 

  14. Yamanaka N, Watanabe S, Toda K, et al. Fine mapping of the FT1 locus for soybean flowering time using a residual heterozygous line derived from a recombinant inbred line. Theor Appl Genet, 2005, 110: 634–639

    Article  Google Scholar 

  15. Fan F J, Fan Y Y, Du J H, et al. Fine mapping of C (Chromogen for Anthocyanin) Gene in rice (in Chinese). Chin J Rice Sci, 2007, 21(5): 454–458

    Google Scholar 

  16. Zhang X J, Tian X H, Li Y M, et al. Study on extraction method and spectral properties of pigment in naturally colored cotton fibers (in Chinese). Cotton Sci Sin, 2008, 20(2): 133–136

    Google Scholar 

  17. Hua S J, Wang X D, Zhao X Q, et al. Dynamics of carbohydrate and pigment content during fiber development in brown-colored cotton (in Chinese). Cotton Sci Sin, 2008, 20(3): 239–243

    Google Scholar 

  18. Zhang L. The karyotype comparative analysis of three species of naturally colored cotton (in Chinese). Acta Agric Boreali-occidentalis Sin, 2008, 17(1): 251–256

    Google Scholar 

  19. Zhao Q L, Pan M X, Sun X L. Compared experiment of color cotton new varieties cultivation (in Chinese). Shihezi Sci Technol, 2007, 5: 1–2

    Google Scholar 

  20. Singh V V, Mohom P, Kothomdaraman R. Naturally colored linted genetic resources in National Cotton Gene Bank, their characteristics and utilization. J Indian Soc Cotton Improv, 1996, 21(2): 151–158

    Google Scholar 

  21. John M E. Characterization of a cotton (Gossypium hirsutum L.) fiber-mRNA (Fb-E6). Plant Physiol, 1995, 107: 1478–1486

    Google Scholar 

  22. John M E. Structural characterization of genes corresponding to cotton fibre mRNA, E6: reduced E6 protein in transgenic plants by antisense gene. Plant Mol Biol, 1996, 30: 297–306

    Article  Google Scholar 

  23. Rinehart J A, Petersen M W, John M E. Tissue-specific and developmental regulation of cotton Gene FbL2A. Plant Physiol, 1996, 112: 1331–1334

    Article  Google Scholar 

  24. Hu Y. The development and preliminary applications of genomic BAC libraries from G. arboreum and G. hirsutum (in Chinese). Doctor Dissertation. Nanjing: Nanjing Agricultural University, 2008

    Google Scholar 

Download references

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Correspondence to WangZhen Guo.

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Supported by National Natural Science Foundation of China (Grant No. 30730067) and Programme of Introducing Talents of Discipline to Universities (Grant No. B08025)

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Zhao, L., Cai, C., Zhang, T. et al. Fine mapping of the red plant gene R 1 in upland cotton(Gossypium hirsutum). Chin. Sci. Bull. 54, 1529–1533 (2009). https://doi.org/10.1007/s11434-009-0225-0

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  • DOI: https://doi.org/10.1007/s11434-009-0225-0

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