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Multiple splicing types of OsRIX4, an RAD21 homolog in rice (Oryza sativa L.)

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  • Biochemistry
  • Published:
Chinese Science Bulletin

Abstract

The present paper describes multiple splicing types of OsRIX4, an RAD21 homolog in rice. A type of alternative splicing (AS), distinctive from all five previously known splicing types, was identified in which interior sequences of a constitutive exon could be spliced. Translation of the transcript produced with this AS type was demonstrated at the protein level. Expression of multiple transcripts was organ specific. The expression abundance of transcripts, OsRIX4-4 and OsRIX4-5, was positively correlated with fertility in rice. The splicing type identified in the present study provided the means to further understand and define different mRNA splicing types in plants and suggested that post-transcription processing of mRNA and its regulation mechanism are complex.

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References

  1. Graveley B R. Alternative splicing: Increasing diversity in the proteomic world. Trends Genet, 2001, 17: 99–108

    Article  Google Scholar 

  2. Smith C W, Valcarcel J. Alternative pre-mRNA splicing: The logic of combinatorial control. Trends Biochem Sci, 2000, 25: 381–388

    Article  Google Scholar 

  3. Kazan K. Alternative splicing and proteome diversity in plants: The tip of the iceberg has just emerged. Trends Plant Sci, 2003, 8: 468–471

    Article  Google Scholar 

  4. Ast G. How did alternative splicing evolve? Nat Rev Genet, 2004, 5: 773–782

    Article  Google Scholar 

  5. Werneke J M, Chatfield J M, Ogren W L. Alternative mRNA splicing generates the two ribulosebisphosphate carboxylase/oxygenase activase polypeptides in spinach and Arabidopsis. Plant Cell, 1989, 1: 815–825

    Article  Google Scholar 

  6. Dinesh-Kumar S P, Baker B J. Alternatively spliced N resistance gene transcripts: Their possible role in tobacco mosaic virus resistance. Proc Natl Acad Sci USA, 2000, 97: 1908–1913

    Article  Google Scholar 

  7. Luehrsen K R, Taha S, Walbot V. Nuclear pre-mRNA processing in higher plant. Prog Nucl Acid Res Mol Biol, 1994, 47: 149–193

    Article  Google Scholar 

  8. Kalyna M, Barta1 A. A plethora of plant serine/arginine-rich proteins: redundancy or evolution of novel gene functions? Biochem Soc Trans, 2004, 32: 561–564

    Article  Google Scholar 

  9. Cheng Z Q, Dong H T, Wu Y L, et al. Cloning of resistance-related gene fragments induced by Xanthomonas oryzae pv. Oryzae. J Agric Biotech (in Chinese), 2000, 8(1): 45–48

    Google Scholar 

  10. He Z H, Sheng Z T. Near isogenic pair of indica rice with blast resistance genes. Int Rice Res Newslett, 1996, 15(1): 7

    Google Scholar 

  11. Sambrook J, Russell D W. Molecular Cloning. 3rd ed. New York: Cold Spring Harbor Laboratory Press, 2002

    Google Scholar 

  12. Wang B B, Brendel V. Genomewide comparative analysis of alternative splicing in plants. Proc Natl Acad Sci USA, 2006, 103(18): 7175–7180

    Article  Google Scholar 

  13. Esther K, Kende H. Identification of a gibberellin-induced gene in deepwater rice using differential display of mRNA. Plant Mol Biol, 1995, 28: 589–592

    Article  Google Scholar 

  14. Macknight R I, Bancroft T, Page C, et al. FCA, a gene controlling flowering time in Arabidopsis, encodes a protein containing RNA-binding domains. Cell, 1997, 89: 737–745

    Article  Google Scholar 

  15. Cai X L, Wang Z Y, Xing Y Y, et al. Aberrant splicing of intron 1 leads to the heterogeneous 5′ UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content. Plant J, 1998, 14: 459–465

    Article  Google Scholar 

  16. Bai X F, Branda N, Dong F G, et al. Isolation and characterization of SYN1 gene, a RAD21-like gene essential for meiosis in arabidopsis. Plant Cell, 1999, 11: 417–430

    Article  Google Scholar 

  17. Celotto A M, Graveley B R. Alternative splicing of the Drosophila Dscam pre-mRNA is both temporally and spatially regulated. Genetics, 2001, 159: 599–608

    Google Scholar 

Download references

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Correspondence to Dong HaiTao or Li DeBao.

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Supported by the National Natural Science Foundation of China (Grant No. 30170592) and Zhejiang Provincial Science and Technology Project (Grant No. 2005C22002)

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Dong, H., Guo, X., Pei, Y. et al. Multiple splicing types of OsRIX4, an RAD21 homolog in rice (Oryza sativa L.). CHINESE SCI BULL 52, 1468–1474 (2007). https://doi.org/10.1007/s11434-007-0218-9

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  • DOI: https://doi.org/10.1007/s11434-007-0218-9

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