Skip to main content
Log in

An urgent call on revisions to current genome annotation strategies

  • Research Highlight
  • Published:
Science China Life Sciences Aims and scope Submit manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  • Chen, Y., Li, D., Fan, W., Zheng, X., Zhou, Y., Ye, H., Liang, X., Du, W., Zhou, Y., and Wang, K. (2020). PsORF: a database of small ORFs in plants. Plant Biotechnol J 18, 2158–2160.

    Article  PubMed  PubMed Central  Google Scholar 

  • Long, M., Betrán, E., Thornton, K., and Wang, W. (2003). The origin of new genes: glimpses from the young and old. Nat Rev Genet 4, 865–875.

    Article  CAS  PubMed  Google Scholar 

  • Shi, L., Lin, Y.H., Sierant, M.C., Zhu, F., Cui, S., Guan, Y., Sartor, M.A., Tanabe, O., Lim, K.C., and Engel, J.D. (2014). Developmental transcriptome analysis of human erythropoiesis. Hum Mol Genet 23, 4528–4542.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wang, B., Tseng, E., Regulski, M., Clark, T.A., Hon, T., Jiao, Y., Lu, Z., Olson, A., Stein, J.C., and Ware, D. (2016a). Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing. Nat Commun 7, 11708.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wang, D., Fan, W., Guo, X., Wu, K., Zhou, S., Chen, Z., Li, D., Wang, K., Zhu, Y., and Zhou, Y. (2020). MaGenDB: a functional genomics hub for Malvaceae plants. Nucleic Acids Res 48, D1076–D1084.

    CAS  PubMed  Google Scholar 

  • Wang, K., Huang, G., and Zhu, Y. (2016b). Transposable elements play an important role during cotton genome evolution and fiber cell development. Sci China Life Sci 59, 112–121.

    Article  CAS  PubMed  Google Scholar 

  • Wang, K., Wang, D., Zheng, X., Qin, A., Zhou, J., Guo, B., Chen, Y., Wen, X., Ye, W., Zhou, Y., et al. (2019). Multi-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton. Nat Commun 10, 4714.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wen, X., Chen, Z., Yang, Z., Wang, M., Jin, S., Wang, G., Zhang, L., Wang, L., Li, J., Saeed, S., et al. (2023). A comprehensive overview of cotton genomics, biotechnology and molecular biological studies. Sci China Life Sci doi: https://doi.org/10.1007/s11427-022-2278-0.

  • Wu, P., Zhang, H., Lin, W., Hao, Y., Ren, L., Zhang, C., Li, N., Wei, H., Jiang, Y., and He, F. (2014). Discovery of novel genes and gene isoforms by integrating transcriptomic and proteomic profiling from mouse liver. J Proteome Res 13, 2409–2419.

    Article  CAS  PubMed  Google Scholar 

  • Yang, Y., Wen, X., Wu, Z., Wang, K., and Zhu, Y. (2023). Large-scale long terminal repeat insertions produced a significant set of novel transcripts in cotton. Sci China Life Sci doi: https://doi.org/10.1007/s11427-022-2341-8.

  • Zheng, X., Chen, Y., Zhou, Y., Shi, K., Hu, X., Li, D., Ye, H., Zhou, Y., and Wang, K. (2021). Full-length annotation with multistrategy RNA-seq uncovers transcriptional regulation of lncRNAs in cotton. Plant Physiol 185, 179–195.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Yu Zhou or Bao-Liang Song.

Ethics declarations

Compliance and ethics The author(s) declare that they have no conflict of interest.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zhou, Y., Song, BL. An urgent call on revisions to current genome annotation strategies. Sci. China Life Sci. 66, 1942–1943 (2023). https://doi.org/10.1007/s11427-023-2350-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11427-023-2350-5

Navigation