CASCIRE surveillance network and work on avian influenza viruses

References

  1. Bi, Y., Mei, K., Shi, W., Liu, D., Yu, X., Gao, Z., Zhao, L., Gao, G.F., Chen, J., and Chen, Q. (2015a). Two novel reassortants of avian influenza A (H5N6) virus in China. J Gene Virol 96, 975–981.

    CAS  Article  Google Scholar 

  2. Bi, Y., Wong, G., Liu, Y., Liu, L., Gao, G.F., and Shi, Y. (2016e). Ribavirin is effective against drug-resistant H7N9 influenza virus infections. Protein Cell 7, 611–614.

    Article  PubMed  PubMed Central  Google Scholar 

  3. Bi, Y., Xiao, H., Chen, Q., Wu, Y., Fu, L., Quan, C., Wong, G., Liu, J., Haywood, J., Liu, Y., Zhou, B., Yan, J., Liu, W., and Gao, G.F. (2015b). Changes in the length of the neuraminidase stalk region impact H7N9 virulence in mice. J Virol 90, 2142–2149.

    Article  PubMed  Google Scholar 

  4. Bi, Y., Xie, Q., Zhang, S., Li, Y., Xiao, H., Jin, T., Zheng, W., Li, J., Jia, X., Sun, L., Liu, J., Qin, C., Gao, G.F., and Liu, W. (2015c). Assessment of the internal genes of influenza A (H7N9) virus contributing to high pathogenicity in mice. J Virol 89, 2–13.

    Article  PubMed  Google Scholar 

  5. Bi, Y., Zhang, Z., Liu, W., Yin, Y., Hong, J., Li, X., Wang, H., Wong, G., Chen, J., Li, Y., Ru, W., Gao, R., Liu, D., Liu, Y., Zhou, B., Gao, G.F., Shi, W., and Lei, F. (2015d). Highly pathogenic avian influenza A (H5N1) virus struck migratory birds in China in 2015. Sci Rep 5, 12–986.

    Google Scholar 

  6. Bi, Y., Chen, J., Zhang, Z., Li, M., Cai, T., Sharshov, K., Susloparov, I., Shestopalov, A., Wong, G., He, Y., Xing, Z., Sun, J., Liu, D., Liu, Y., Liu, L., Liu, W., Lei, F., Shi, W., and Gao, G.F. (2016a). Highly pathogenic avian influenza H5N1 Clade 2.3.2.1c virus in migratory birds, 2014–2015. Virol Sin 31, 300–305.

    Article  PubMed  Google Scholar 

  7. Bi, Y., Chen, Q., Wang, Q., Chen, J., Jin, T., Wong, G., Quan, C., Liu, J., Wu, J., Yin, R., Zhao, L., Li, M., Ding, Z., Zou, R., Xu, W., Li, H., Wang, H., Tian, K., Fu, G., Huang, Y., Shestopalov, A., Li, S., Xu, B., Yu, H., Luo, T., Lu, L., Xu, X., Luo, Y., Liu, Y., Shi, W., Liu, D., and Gao, G.F. (2016b). Genesis, evolution and prevalence of H5N6 avian influenza viruses in China. Cell Host Microbe 20, 810–821.

    CAS  Article  PubMed  Google Scholar 

  8. Bi, Y., Liu, H., Xiong, C., Di Liu, C., Shi, W., Li, M., Liu, S., Chen, J., Chen, G., Li, Y., Yang, G., Lei, Y., Xiong, Y., Lei, F., Wang, H., Chen, Q., Chen, J., and Gao, G.F. (2016c). Novel avian influenza A (H5N6) viruses isolated in migratory waterfowl before the first human case reported in China, 2014. Sci Rep 6, 29888.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  9. Bi, Y., Liu, J., Xiong, H., Zhang, Y., Liu, D., Liu, Y., Gao, G.F., and Wang, B. (2016d). A new reassortment of influenza A (H7N9) virus causing human infection in Beijing, 2014. Sci Rep 6, 26624.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  10. Cao, S., Liu, X., Yu, M., Li, J., Jia, X., Bi, Y., Sun, L., Gao, G.F., and Liu, W. (2012). A nuclear export signal in the matrix protein of influenza A virus is required for efficient virus replication. J Virol 86, 4883–4891.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  11. Cao, S., Jiang, J., Li, J., Li, Y., Yang, L., Wang, S., Yan, J., Gao, G.F., and Liu, W. (2014). Characterization of the nucleocytoplasmic shuttle of the matrix protein of influenza B virus. J Virol 88, 7464–7473.

    Article  PubMed  PubMed Central  Google Scholar 

  12. Cui, L., Liu, D., Shi, W., Pan, J., Qi, X., Li, X., Guo, X., Zhou, M., Li, W., Li, J., Haywood, J., Xiao, H., Yu, X., Pu, X., Wu, Y., Yu, H., Zhao, K., Zhu, Y., Wu, B., Jin, T., Shi, Z., Tang, F., Zhu, F., Sun, Q., Wu, L., Yang, R., Yan, J., Lei, F., Zhu, B., Liu, W., Ma, J., Wang, H., and Gao, G.F. (2014). Dynamic reassortments and genetic heterogeneity of the human-infecting influenza A (H7N9) virus. Nat Commun 5, 3142.

    Article  PubMed  Google Scholar 

  13. Dai, L., Song, J., Lu, X., Deng, Y.Q., Musyoki, A.M., Cheng, H., Zhang, Y., Yuan, Y., Song, H., Haywood, J., Xiao, H., Yan, J., Shi, Y., Qin, C.F., Qi, J., and Gao, G.F. (2016). Structures of the Zika virus envelope protein and its complex with a flavivirus broadly protective antibody. Cell Host Microbe 19, 696–704.

    CAS  Article  PubMed  Google Scholar 

  14. Fu, L., Bi, Y., Wu, Y., Zhang, S., Qi, J., Li, Y., Lu, X., Zhang, Z., Lv, X., Yan, J., Gao, G.F., and Li, X. (2016). Structure-based tetravalent zanamivir with potent inhibitory activity against drug-resistant influenza viruses. J Med Chem 59, 6303–6312.

    CAS  Article  PubMed  Google Scholar 

  15. Gao, G.F. (2014). Influenza and the live poultry trade. Science 344, 235–235.

    CAS  Article  PubMed  Google Scholar 

  16. Gao, S., Wang, S., Cao, S., Sun, L., Li, J., Bi, Y., Gao, G.F., and Liu, W. (2014). Characteristics of nucleocytoplasmic transport of H1N1 influenza A virus nuclear export protein. J Virol 88, 7455–7463.

    Article  PubMed  PubMed Central  Google Scholar 

  17. Hu, X., Liu, D., Wang, M., Yang, L., Wang, M., Zhu, Q., Li, L., and Gao, G.F. (2011). Clade 2.3.2 avian influenza virus (H5N1), Qinghai Lake Region, China, 2009–2010. Emerg Infect Dis 17, 560–562.

    Article  PubMed  PubMed Central  Google Scholar 

  18. Hu, Y., Jiang, L., Lai, W., Qin, Y., Zhang, T., Wang, S., and Ye, X. (2016). microRNA-33a disturbs influenza A virus replication by targeting ARCN1 and inhibiting viral ribonucleoprotein activity. J Gene Virol 97, 27–38.

    CAS  Article  Google Scholar 

  19. Jiang, J., Li, J., Fan, W., Zheng, W., Yu, M., Chen, C., Sun, L., Bi, Y., Ding, C., Gao, G.F., and Liu, W. (2016). Robust Lys63-linked ubiquitination of RIG-I promotes cytokine eruption in early influenza B virus infection. J Virol 90, 6263–6275.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  20. Li, J., Chen, C., Wong, G., Dong, W., Zheng, W., Li, Y., Sun, L., Zhang, L., Gao, G.F., Bi, Y., and Liu, W. (2016). Cyclophilin A protects mice against infection by influenza A virus. Sci Rep 6, 28978.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  21. Li, J., Zheng, W., Hou, L., Chen, C., Fan, W., Qu, H., Jiang, J., Liu, J., Gao, G.F., Zhou, J., Sun, L., and Liu, W. (2017). Differential nucleocytoplasmic shuttling of the nucleoprotein of influenza a viruses and association with host tropism. Cell Microbiol 19, e12692.

    Article  Google Scholar 

  22. Li, Q., Qi, J., Zhang, W., Vavricka, C.J., Shi, Y., Wei, J., Feng, E., Shen, J., Chen, J., Liu, D., He, J., Yan, J., Liu, H., Jiang, H., Teng, M., Li, X., and Gao, G.F. (2010). The 2009 pandemic H1N1 neuraminidase N1 lacks the 150-cavity in its active site. Nat Struct Mol Biol 17, 1266–1268.

    CAS  Article  PubMed  Google Scholar 

  23. Liu, D., Shi, W., Shi, Y., Wang, D., Xiao, H., Li, W., Bi, Y., Wu, Y., Li, X., Yan, J., Liu, W., Zhao, G., Yang, W., Wang, Y., Ma, J., Shu, Y., Lei, F., and Gao, G.F. (2013). Origin and diversity of novel avian influenza A H7N9 viruses causing human infection: phylogenetic, structural, and coalescent analyses. Lancet 381, 1926–1932.

    Article  PubMed  Google Scholar 

  24. Liu, D., Shi, W., and Gao, G.F. (2014). Poultry carrying H9N2 act as incubators for novel human avian influenza viruses. Lancet 383, 869.

    Article  PubMed  Google Scholar 

  25. Liu, J., Xiao, H., Lei, F., Zhu, Q., Qin, K., Zhang, X.W., Zhang, X.L., Zhao, D., Wang, G., Feng, Y., Ma, J., Liu, W., Wang, J., and Gao, G.F. (2005). Highly pathogenic H5N1 influenza virus infection in migratory birds. Science 309, 1206–1206.

    CAS  Article  PubMed  Google Scholar 

  26. Liu, X., Sun, L., Yu, M., Wang, Z., Xu, C., Xue, Q., Zhang, K., Ye, X., Kitamura, Y., and Liu, W. (2009). Cyclophilin A interacts with influenza A virus M1 protein and impairs the early stage of the viral replication. Cell Microbiol 11, 730–741.

    CAS  Article  PubMed  Google Scholar 

  27. Liu, X., Zhao, Z., Xu, C., Sun, L., Chen, J., Zhang, L., and Liu, W. (2012). Cyclophilin A restricts influenza A virus replication through degradation of the M1 protein. PLoS ONE 7, e31063.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  28. Lu, X., Shi, Y., Zhang, W., Zhang, Y., Qi, J., and Gao, G.F. (2013). Structure and receptor-binding properties of an airborne transmissible avian influenza A virus hemagglutinin H5 (VN1203mut). Protein Cell 4, 502–511.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  29. Ma, Y., Ouyang, J., Wei, J., Maarouf, M., and Chen, J.L. (2016). Involvement of host non-coding RNAs in the pathogenesis of the influenza virus. Int J Mol Sci 18, 39.

    Article  PubMed Central  Google Scholar 

  30. Ouyang, J., Zhu, X., Chen, Y., Wei, H., Chen, Q., Chi, X., Qi, B., Zhang, L., Zhao, Y., Gao, G.F., Wang, G., and Chen, J.L. (2014). NRAV, a long noncoding RNA, modulates antiviral responses through suppression of interferon-stimulated gene transcription. Cell Host Microbe 16, 616–626.

    CAS  Article  PubMed  Google Scholar 

  31. Qi, W., Jia, W., Liu, D., Li, J., Bi, Y., Xie, S., Li, B., Hu, T., Du, Y., Xing, L., Zhang, J., Zhang, F., Wei, X., Eden, J.S., Li, H., Tian, H., Li, W., Su, G., Lao, G., Xu, C., Xu, B., Liu, W., Zhang, G., Ren, T., Holmes, E.C., Cui, J., Shi, W., Gao, G.F., and Liao, M. (2017). Emergence and adaptation of a novel highly pathogenic H7N9 influenza virus in birds and humans from a 2013-human-infecting low pathogenic ancestor. J Virol in press doi: 10.1128/JVI.00921-17.

    Google Scholar 

  32. Shi, Y., Zhang, W., Wang, F., Qi, J., Wu, Y., Song, H., Gao, F., Bi, Y., Zhang, Y., Fan, Z., Qin, C., Sun, H., Liu, J., Haywood, J., Liu, W., Gong, W., Wang, D., Shu, Y., Wang, Y., Yan, J., and Gao, G.F. (2013). Structures and receptor binding of hemagglutinins from human-infecting H7N9 influenza viruses. Science 342, 243–247.

    CAS  Article  PubMed  Google Scholar 

  33. Song, H., Qi, J., Khedri, Z., Diaz, S., Yu, H., Chen, X., Varki, A., Shi, Y., and Gao, G.F. (2016). An open receptor-binding cavity of hemagglutinin- esterase-fusion glycoprotein from newly-identified influenza D virus: basis for its broad cell tropism. PLoS Pathog 12, e1005411.

    Article  PubMed  PubMed Central  Google Scholar 

  34. Song, H., Qi, J., Xiao, H., Bi, Y., Zhang, W., Xu, Y., Wang, F., Shi, Y., and Gao, G.F. (2017). Avian-to-human receptor-binding adaptation by influenza A virus hemagglutinin H4. Cell Rep 20, 1201–1214.

    CAS  Article  PubMed  Google Scholar 

  35. Su, S., Bi, Y., Wong, G., Gray, G.C., Gao, G.F., and Li, S. (2015). Epidemiology, evolution, and recent outbreaks of avian influenza virus in China. J Virol 89, 8671–8676.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  36. Vavricka, C.J., Li, Q., Wu, Y., Qi, J., Wang, M., Liu, Y., Gao, F., Liu, J., Feng, E., He, J., Wang, J., Liu, H., Jiang, H., and Gao, G.F. (2011). Structural and functional analysis of laninamivir and its octanoate prodrug reveals group specific mechanisms for influenza NA inhibition. PLoS Pathog 7, e1002249.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  37. Wang, F., Qi, J., Bi, Y., Zhang, W., Wang, M., Zhang, B., Wang, M., Liu, J., Yan, J., Shi, Y., and Gao, G.F. (2015a). Adaptation of avian influenza A (H6N1) virus from avian to human receptor-binding preference. EMBO J 34, 1661–1673.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  38. Wang, G., Zhan, D., Li, L., Lei, F., Liu, B., Liu, D., Xiao, H., Feng, Y., Li, J., Yang, B., Yin, Z., Song, X., Zhu, X., Cong, Y., Pu, J., Wang, J., Liu, J., Gao, G.F., and Zhu, Q. (2008). H5N1 avian influenza re-emergence of Lake Qinghai: phylogenetic and antigenic analyses of the newly isolated viruses and roles of migratory birds in virus circulation. J Gene Virol 89, 697–702.

    CAS  Article  Google Scholar 

  39. Wang, M., Zhang, W., Qi, J., Wang, F., Zhou, J., Bi, Y., Wu, Y., Sun, H., Liu, J., Huang, C., Li, X., Yan, J., Shu, Y., Shi, Y., and Gao, G.F. (2015b). Structural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus. Nat Commun 6, 5600.

    CAS  Article  PubMed  Google Scholar 

  40. Wang, Q., Yang, H., Liu, X., Dai, L., Ma, T., Qi, J., Wong, G., Peng, R., Liu, S., Li, J., Li, S., Song, J., Liu, J., He, J., Yuan, H., Xiong, Y., Liao, Y., Li, J., Yang, J., Tong, Z., Griffin, B.D., Bi, Y., Liang, M., Xu, X., Qin, C., Cheng, G., Zhang, X., Wang, P., Qiu, X., Kobinger, G., Shi, Y., Yan, J., and Gao, G.F. (2016). Molecular determinants of human neutralizing antibodies isolated from a patient infected with Zika virus. Sci Transl Med 8, 369ra179.

    Article  PubMed  Google Scholar 

  41. Wang, S., Zhao, Z., Bi, Y., Sun, L., Liu, X., and Liu, W. (2013). Tyrosine 132 phosphorylation of influenza A virus M1 protein is crucial for virus replication by controlling the nuclear import of M1. J Virol 87, 6182–6191.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  42. Wang, Y., Tong, X., and Ye, X. (2012). Ndfip1 negatively regulates RIG-Idependent immune signaling by enhancing E3 ligase Smurf1-mediated MAVS degradation. J Immunol 189, 5304–5313.

    CAS  Article  PubMed  Google Scholar 

  43. Wu, Y., Bi, Y., Vavricka, C.J., Sun, X., Zhang, Y., Gao, F., Zhao, M., Xiao, H., Qin, C., He, J., Liu, W., Yan, J., Qi, J., and Gao, G.F. (2013). Characterization of two distinct neuraminidases from avian-origin human- infecting H7N9 influenza viruses. Cell Res 23, 1347–1355.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  44. Wu, Y., Cho, M.S., Shore, D., Song, M., Choi, J.A., Jiang, T., Deng, Y.Q., Bourgeois, M., Almli, L., Yang, H., Chen, L.M., Shi, Y., Qi, J., Li, A., Yi, K.S., Chang, M.S., Bae, J.S., Lee, H.J., Shin, J.Y., Stevens, J., Hong, S.S., Qin, C.F., Gao, G.F., Chang, S.J., and Donis, R.O. (2015). A potent broad-spectrum protective human monoclonal antibody crosslinking two haemagglutinin monomers of influenza A virus. Nat Commun 6, 7708.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  45. Yu, M., Liu, X., Cao, S., Zhao, Z., Zhang, K., Xie, Q., Chen, C., Gao, S., Bi, Y., Sun, L., Ye, X., Gao, G.F., and Liu, W. (2012). Identification and characterization of three novel nuclear export signals in the influenza A virus nucleoprotein. J Virol 86, 4970–4980.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  46. Zhang, F., Bi, Y., Wang, J., Wong, G., Shi, W., Hu, F., Yang, Y., Yang, L., Deng, X., Jiang, S., He, X., Liu, Y., Yin, C., Zhong, N., and Gao, G.F. (2017). Human infections with recently-emerging highly pathogenic H7N9 avian influenza virus in China. J Infect 75, 71–75.

    Article  PubMed  Google Scholar 

  47. Zhang, J., Li, G., and Ye, X. (2010). Cyclin T1/CDK9 interacts with influenza A virus polymerase and facilitates its association with cellular rna polymerase II. J Virol 84, 12619–12627.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  48. Zhang, T., Bi, Y., Tian, H., Li, X., Liu, D., Wu, Y., Jin, T., Wang, Y., Chen, Q., Chen, Z., Chang, J., Gao, G.F., and Xu, B. (2014). Human infection with influenza virus A(H10N8) from live poultry markets, China, 2014. Emerg Infect Dis in press doi: 10.3201/eid2012.140911.

    Google Scholar 

  49. Zhang, W., Shi, Y., Lu, X., Shu, Y., Qi, J., and Gao, G.F. (2013a). An airborne transmissible avian influenza H5 hemagglutinin seen at the atomic level. Science 340, 1463–1467.

    CAS  Article  PubMed  Google Scholar 

  50. Zhang, W., Shi, Y., Qi, J., Gao, F., Li, Q., Fan, Z., Yan, J., and Gao, G.F. (2013b). Molecular basis of the receptor binding specificity switch of the hemagglutinins from both the 1918 and 2009 pandemic influenza A viruses by a D225G substitution. J Virol 87, 5949–5958.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  51. Zheng, W., Cao, S., Chen, C., Li, J., Zhang, S., Jiang, J., Niu, Y., Fan, W., Li, Y., Bi, Y., Gao, G.F., Sun, L., and Liu, W. (2017). Threonine 80 phosphorylation of non-structural protein 1 regulates the replication of influenza A virus by reducing the binding affinity with RIG-I. Cell Microbiol 19, e12643.

    Article  Google Scholar 

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Acknowledgements

This work was supported by the National Key R & D Program of China (2016YFE0205800), National Science and Technology Major Project (2016ZX10004222), Emergency Technology Research Issue on Prevention and Control for Human Infection with A(H7N9) Avian Influenza Virus (10600100000015001206), intramural special grants for influenza virus research from the Chinese Academy of Sciences (KJZD-EWL15), Tianjin Research Program of the Application Foundation and Advanced Technology (14JCYBJC24400) and the research project RFBR 17-04-01919. George F. Gao is a leading principal investigator of the NSFC Innovative Research Group (81621091). Yuhai Bi is supported by the Youth Innovation Promotion Association of Chinese Academy of Sciences (CAS) (2017122).

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Bi, Y., Shi, W., Chen, J. et al. CASCIRE surveillance network and work on avian influenza viruses. Sci. China Life Sci. 60, 1386–1391 (2017). https://doi.org/10.1007/s11427-017-9251-2

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