Abstract
DNA polymerase delta is encoded by the POLD1 gene, the transcription of which is strictly cell cycle-dependent. However, the means by which POLD1 transcription is regulated by the cell cycle mechanism is currently unknown. We discovered a novel element in the POLD1 promoter known as a CDE(cell cycle-dependent element)/CHR(cell cycle gene homology region) element. A series of luciferase reporter constructs containing various POLD1 promoter mutations were used to investigate the role of the CDE/CHR element in POLD1 transcription. When the CDE/CHR element was mutated, the promoter activity was up-regulated, and the cell-cycle related factors E2F1 and p21 stopped regulating the promoter. Furthermore, cell cycle-dependent changes in the promoter activity required the integrative CDE/CHR element. Electrophoretic mobility shift assay (EMSA) revealed the presence of at least three types of DNA/protein complexes binding to the CDE/CHR element. Our findings provide strong evidence that the CDE/CHR-like sequence is an active functional element in the POLD1 promoter, which is important for the cell cycle regulation of the POLD1 gene.
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Kohn K W, Aladjem M I, Weinstein J N, et al. Chromatin challenges during DNA replication: a systems representation. Mol Biol Cell, 2008, 19(1): 1–7, 17959828, 10.1091/mbc.E07-06-0528, 1:CAS:528:DC%2BD1cXlslens7Y%3D
Xu H, Liu Q. DNA replication regulation and serious human diseases —a direction of medium and long term development program of biomedical science. China Biotech, 2003, 23(10): 1–8
Zhang H J, Han S W, Sang J L. Structure and function of eukaryotic DNA polymerase δ. Chinese J Cell Biol, 2004, 26(3): 271–275, 1:CAS:528:DC%2BD2MXhtVGqtbrJ
Lee M Y, Tan C K, So A G, et al. Purification of deoxyribonucleic acid polymerase delta from calf thymus: partial characterization of physical properties. Biochemistry, 1980, 19: 2096–2101, 7378348, 10.1021/bi00551a015, 1:CAS:528:DyaL3cXkt1Wgtr8%3D
Chang L S, Zhao L, Zhu L, et al. Structure of the gene for the catalytic subunit of human DNA polymerase delta (POLD1). Genomics, 1995, 28(3): 411–419, 7490075, 10.1006/geno.1995.1169, 1:CAS:528:DyaK2MXnslahs7w%3D
Zhao L, Chang L S. The human POLD1 gene: identifictaion of an upstream activitor sequence, activation by Sp1 and Sp3, and cell cycle regulation. J Biol Chem, 1997, 272(8): 4869–4882, 9030545, 10.1074/jbc.272.8.5024, 1:CAS:528:DyaK2sXhsValt7k%3D
Zeng X R, Hao H, Jiang Y, et al. Regulation of human DNA polymerase delta during the cell cycle. J Biol Chem, 1994, 269(39): 24027–24033, 7929054, 1:CAS:528:DyaK2cXmtVWlur4%3D
Liu N, Lucibello F C, Korner K, et al. CDF-1, a novel E2F-unrelated factor, interacts with cell cycle-regulated repressor elements in multiple promoters. Nucleic Acids Res, 1997, 25: 4915–4920, 9396796, 10.1093/nar/25.24.4915, 1:CAS:528:DyaK1cXntFymtg%3D%3D
Lluis F, Laurent L C, Jolanta P, et al. A CDE/CHR-like element mediates repression of transcription of the mouse RB2 (p130) gene. FEBS Lett, 2000, 471: 29–33, 10.1016/S0014-5793(00)01363-6
Zhu X Y, Xu H, Li L, et al. Influences on POLD1 promoter activity by the changes of p53 subcelluar location. Prog Nat Sci, 2006, 16(4): 555–562
Xu H, Zhu X Y, Zhang H J, et al. G1 phase related factors regulate POLD1 promoter. Prog Nat Sci, 2007, 17(6): 716–723
Shi L, Xu H, Zhu X Y, et al. p21 inhibits the expression of DNA polymerase delta, and influences the proliferation and tumorous phenotype of MCF7 cells. Prog Nat Sci, 2006, 16(6), 672–678
Song N M, Sang J L, Xu H. Molecular structure and biological function of proliferating cell nuclear antigen. Prog Nat Sci, 2007, 17(10), 1127–1135, 1:CAS:528:DC%2BD1cXhsVelt74%3D
Li B Q, Lee M Y. Transcriptional regulation of the human DNA polymerase δ catalytic subunit gene POLD1 by p53 tumor suppressor and Sp1. J Biol Chem 2001, 276(32): 29729–29739, 11375983, 10.1074/jbc.M101167200, 1:CAS:528:DC%2BD3MXmtFeiurs%3D
Muller G A, Heissig F, Engeland K. Chimpanzee, orangutan, mouse, and human cell cycle promoters exempt CCAAT boxes and CHR elements from interspecies differences. Mol Biol Evol, 2007, 24(3): 814–826, 17205977, 10.1093/molbev/msl210
Zwicker J, Müller R. Cell-cycle regulation of gene expression by transcriptional repression. Trends Genet, 1997, 13(1): 3–6, 9009839, 10.1016/S0168-9525(96)30112-1, 1:CAS:528:DyaK2sXntVCrsg%3D%3D
Sun A, Bagella L, Tutton S, et al. Grom G0 to S phase: a view of the roles played by the retinoblastoma(Rb) family members in the Rb-E2F pathway. J Cell Biochem, 2007, 102(6): 1400–1404, 17979151, 10.1002/jcb.21609, 1:CAS:528:DC%2BD2sXhsVeitL7O
Zwicker J, Lucibello F C, Wolfraim L A, et al. Cell cycle regulation of the cyclin A, cdc25C and cdc2 genes is based on a common mechanism of transcriptional repression. EMBO J, 1995, 14(18): 4514–4522, 7556094, 1:CAS:528:DyaK2MXovVektrc%3D
Yang J, Song K, Krebs T L, et al. Rb/E2F4 and Smad2/3 link surviving to TGF-β-induced apoptosis and tumor progression. Oncogene, 2008, 27: 5326–5338, 18504435, 10.1038/onc.2008.165, 1:CAS:528:DC%2BD1cXhtV2qtr3J
Liu N, Lucibello F C, Zwicker J, et al. Cell cycle-regulated repression of B-myb transcription: cooperation of an E2F site with a contiguous corepressor element. Nucleic Acids Res, 1996, 24(15): 2905–2910, 8760872, 10.1093/nar/24.15.2905, 1:CAS:528:DyaK28XlsFChurw%3D
Liu N S, Lucibello F C, Korner K, et al. CDF-1, a novel E2F-unrelated factor, interacts with cell cycle-regulated repressor elements in multiple promoters. Nucleic Acids Res, 1997, 25(24): 4915–4920, 9396796, 10.1093/nar/25.24.4915, 1:CAS:528:DyaK1cXntFymtg%3D%3D
Alexandre P, Severine C, Ned L, et al. CHF: a novel factor binding to cyclin A CHR corepressor element. Oncogene, 1999(18): 6222–6232
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Supported by National Basic Research Program of China (Grant No. 2007CB914401) and National High Technology Research and Development Program of China (Grant No. 2006AA02Z4A6)
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Song, N., Zhu, X., Shi, L. et al. Identification and functional analysis of a CDE/CHR element in the POLD1 promoter. SCI CHINA SER C 52, 551–559 (2009). https://doi.org/10.1007/s11427-009-0077-5
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DOI: https://doi.org/10.1007/s11427-009-0077-5